SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    775401 8bpo:D2 (2.8) BS01 rna ? GO:0000027 ... P19949 37295431
    775402 8bpo:D2 (2.8) BS02 rna ? GO:0000027 ... P19949 37295431
    775403 8bpo:E2 (2.8) BS01 rna ? GO:0000027 ... G1SKF7 37295431
    775404 8bpo:F2 (2.8) BS01 rna N/A GO:0000463 ... N/A 37295431
    775405 8bpo:F2 (2.8) BS02 rna N/A GO:0000463 ... N/A 37295431
    775406 8bpo:G2 (2.8) BS01 rna ? GO:0003723 ... G1STW0 37295431
    775407 8bpo:G2 (2.8) BS02 rna ? GO:0003723 ... G1STW0 37295431
    775408 8bpo:H2 (2.8) BS01 rna ? GO:0002181 ... G1SWI6 37295431
    775409 8bpo:I2 (2.8) BS01 rna ? GO:0003735 ... B7NZQ2 37295431
    775410 8bpo:I2 (2.8) BS02 rna ? GO:0003735 ... B7NZQ2 37295431
    775411 8bpo:J2 (2.8) BS01 rna ? GO:0003735 ... G1TUB8 37295431
    775412 8bpo:J2 (2.8) BS02 rna ? GO:0003735 ... G1TUB8 37295431
    775413 8bpo:K2 (2.8) BS01 rna ? GO:0003723 ... G1TKB3 37295431
    775414 8bpo:K2 (2.8) BS02 rna ? GO:0003723 ... G1TKB3 37295431
    775415 8bpo:L2 (2.8) BS01 rna ? GO:0003723 ... G1SZ12 37295431
    775416 8bpo:M2 (2.8) BS01 rna ? GO:0002181 ... G1T0C1 37295431
    775417 8bpo:M2 (2.8) BS02 rna ? GO:0002181 ... G1T0C1 37295431
    775418 8bpo:N2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775419 8bpo:O2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775420 8bpo:O2 (2.8) BS02 rna N/A GO:0003735 ... N/A 37295431
    775421 8bpo:P2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775422 8bpo:Q2 (2.8) BS01 rna N/A GO:0003723 ... N/A 37295431
    775423 8bpo:R2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775424 8bpo:R2 (2.8) BS02 rna N/A GO:0003735 ... N/A 37295431
    775425 8bpo:S2 (2.8) BS01 rna ? GO:0003735 ... G1SHQ2 37295431
    775426 8bpo:S2 (2.8) BS02 rna ? GO:0003735 ... G1SHQ2 37295431
    775427 8bpo:T2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775428 8bpo:T2 (2.8) BS02 peptide N/A GO:0003735 ... N/A 37295431
    775429 8bpo:U2 (2.8) BS01 rna ? GO:0003735 ... G1T6D1 37295431
    775430 8bpo:V2 (2.8) BS01 rna ? GO:0000027 ... G1SE28 37295431
    775431 8bpo:W2 (2.8) BS01 rna ? GO:0003735 ... G1SE76 37295431
    775432 8bpo:W2 (2.8) BS02 rna ? GO:0003735 ... G1SE76 37295431
    775433 8bpo:X2 (2.8) BS01 rna ? GO:0003723 ... G1SQH0 37295431
    775434 8bpo:X2 (2.8) BS02 rna ? GO:0003723 ... G1SQH0 37295431
    775435 8bpo:Y2 (2.8) BS01 rna ? GO:0003735 ... G1TXF6 37295431
    775436 8bpo:Z2 (2.8) BS01 rna ? GO:0003735 ... G1SNY0 37295431
    775437 8bpo:a2 (2.8) BS01 rna ? GO:0002181 ... G1SGR6 37295431
    775438 8bpo:b2 (2.8) BS01 rna ? GO:0002181 ... G1TDL2 37295431
    775439 8bpo:c2 (2.8) BS01 rna ? GO:0002181 ... G1SHG0 37295431
    775440 8bpo:d2 (2.8) BS01 rna ? GO:0003735 ... G1TUN8 37295431
    775441 8bpo:e2 (2.8) BS01 rna ? GO:0000049 ... G1SF08 37295431
    775442 8bpo:f2 (2.8) BS01 rna ? GO:0003735 ... G1TXG5 37295431
    775443 8bpo:f2 (2.8) BS02 ZN ? GO:0003735 ... G1TXG5 37295431
    775444 8bpo:g2 (2.8) BS01 rna ? GO:0000463 ... G1SIT5 37295431
    775445 8bpo:g2 (2.8) BS02 rna ? GO:0000463 ... G1SIT5 37295431
    775446 8bpo:h2 (2.8) BS01 rna ? GO:0003735 ... G1TTQ5 37295431
    775447 8bpo:i2 (2.8) BS01 rna ? GO:0003723 ... U3KPD5 37295431
    775448 8bpo:i2 (2.8) BS02 rna ? GO:0003723 ... U3KPD5 37295431
    775449 8bpo:i2 (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 37295431
    775450 8bpo:j2 (2.8) BS01 rna ? GO:0003735 ... G1U001 37295431
    775451 8bpo:k2 (2.8) BS01 rna ? GO:0003735 ... G1TTN1 37295431
    775452 8bpo:k2 (2.8) BS02 rna ? GO:0003735 ... G1TTN1 37295431
    775453 8bpo:l2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    775454 8bpo:l2 (2.8) BS02 ZN N/A GO:0003735 ... N/A 37295431
    775455 8bpo:n2 (2.8) BS01 rna ? GO:0003735 ... G1T040 37295431
    775456 8bpo:n2 (2.8) BS02 ZN ? GO:0003735 ... G1T040 37295431
    775457 8bpo:o2 (2.8) BS01 rna ? GO:0003735 ... G1SY53 37295431
    775458 8bpo:o2 (2.8) BS02 ZN ? GO:0003735 ... G1SY53 37295431
    775459 8bpo:p2 (2.8) BS01 rna ? GO:0003735 ... G1U7L1 37295431
    775460 8bpo:q2 (2.8) BS01 rna ? GO:0000027 ... G1SPK4 37295431
    775461 8bpo:r2 (2.8) BS01 rna ? GO:0003723 ... G1SMR7 37295431
    775462 8bpo:t2 (2.8) BS01 rna ? GO:0003677 ... Q8N0Z6 37295431
    775463 8bpo:t2 (2.8) BS02 peptide ? GO:0003677 ... Q8N0Z6 37295431
    775464 8bpp:A (3.1) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775465 8bpp:B (3.1) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775466 8bpp:C (3.1) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775467 8bpq:A (2.3) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775468 8bpq:A (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    775469 8bpq:B (2.3) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775470 8bpq:B (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    775471 8bpq:C (2.3) BS01 FMN 1.3.1.- GO:0005829 ... P77258 N/A
    775472 8bpq:C (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    775473 8bpr:A (3.65) BS01 dna ? GO:0000731 ... Q5SLM9 37081315
    775474 8bpr:A (3.65) BS02 ANP ? GO:0000731 ... Q5SLM9 37081315
    775475 8bpr:A (3.65) BS03 ANP ? GO:0000731 ... Q5SLM9 37081315
    775476 8bpr:B (3.65) BS01 ANP ? GO:0000731 ... Q5SLM9 37081315
    775477 8bpr:D (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    775478 8bpr:E (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    775479 8bpr:F (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    775480 8bpu:AAA (1.81) BS01 R2I 3.2.1.17 GO:0003796 ... P00698 36597851
    775481 8bpu:AAA (1.81) BS02 R2U 3.2.1.17 GO:0003796 ... P00698 36597851
    775482 8bpv:A (1.7) BS01 6T3 2.7.10.2 GO:0004672 ... O60674 38843875
    775483 8bpw:A (1.8) BS01 2V9 2.7.10.2 GO:0004672 ... O60674 38843875
    775484 8bpw:B (1.8) BS01 2V9 2.7.10.2 GO:0004672 ... O60674 38843875
    775485 8bpx:A (2.09) BS01 Q7G 7.1.1.2 GO:0005739 ... P92533 36585502
    775486 8bpx:AB (2.09) BS01 peptide 3.4.24.64 GO:0000325 ... Q42290 36585502
    775487 8bpx:AB (2.09) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    775488 8bpx:AC (2.09) BS01 HEM ? GO:0005739 ... P42792 36585502
    775489 8bpx:AC (2.09) BS02 HEM ? GO:0005739 ... P42792 36585502
    775490 8bpx:AC (2.09) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    775491 8bpx:AC (2.09) BS04 UQ5 ? GO:0005739 ... P42792 36585502
    775492 8bpx:AD (2.09) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775493 8bpx:AD (2.09) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775494 8bpx:AD (2.09) BS03 UQ7 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775495 8bpx:AE (2.09) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    775496 8bpx:AI (2.09) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    775497 8bpx:B (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 36585502
    775498 8bpx:B (2.09) BS02 UQ9 7.1.1.2 GO:0005739 ... Q42577 36585502
    775499 8bpx:BB (2.09) BS01 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    775500 8bpx:BC (2.09) BS01 HEM ? GO:0005739 ... P42792 36585502
    775501 8bpx:BC (2.09) BS02 HEM ? GO:0005739 ... P42792 36585502
    775502 8bpx:BC (2.09) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    775503 8bpx:BC (2.09) BS04 UQ7 ? GO:0005739 ... P42792 36585502
    775504 8bpx:BC (2.09) BS05 Q7G ? GO:0005739 ... P42792 36585502
    775505 8bpx:BC (2.09) BS06 Q7G ? GO:0005739 ... P42792 36585502
    775506 8bpx:BD (2.09) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775507 8bpx:BD (2.09) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775508 8bpx:BE (2.09) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    775509 8bpx:BI (2.09) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    775510 8bpx:D (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 36585502
    775511 8bpx:E (2.09) BS01 FES 7.1.1.2 GO:0005739 ... O22769 36585502
    775512 8bpx:F (2.09) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    775513 8bpx:F (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    775514 8bpx:G (2.09) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    775515 8bpx:G (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    775516 8bpx:G (2.09) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    775517 8bpx:H (2.09) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 36585502
    775518 8bpx:H (2.09) BS02 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    775519 8bpx:H (2.09) BS03 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    775520 8bpx:I (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    775521 8bpx:I (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    775522 8bpx:J (2.09) BS01 Q7G 7.1.1.2 GO:0005739 ... P60497 36585502
    775523 8bpx:L (2.09) BS01 UQ5 7.1.1.2 GO:0005739 ... P29388 36585502
    775524 8bpx:M (2.09) BS01 Q7G 7.1.1.2 GO:0003954 ... P93313 36585502
    775525 8bpx:N (2.09) BS01 UQ5 7.1.1.2 GO:0005739 ... O05000 36585502
    775526 8bpx:N (2.09) BS02 Q7G 7.1.1.2 GO:0005739 ... O05000 36585502
    775527 8bpx:O (2.09) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    775528 8bpx:P (2.09) BS01 NDP ? GO:0005739 ... Q9SK66 36585502
    775529 8bpx:R (2.09) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    775530 8bpx:U (2.09) BS01 8Q1 ? GO:0000036 ... O80800 36585502
    775531 8bpx:W (2.09) BS01 8Q1 ? GO:0005739 ... Q9LHI0 36585502
    775532 8bpx:X (2.09) BS01 Q7G ? GO:0005739 ... Q8LGE7 36585502
    775533 8bpx:Z (2.09) BS01 Q7G ? GO:0005576 ... Q8RWA7 36585502
    775534 8bpx:f (2.09) BS01 peptide ? GO:0005739 ... Q84W12 36585502
    775535 8bpx:n (2.09) BS01 8Q1 ? GO:0000325 ... Q945M1 36585502
    775536 8bpx:x (2.09) BS01 COO ? GO:0000325 ... Q9SMN1 36585502
    775537 8bpx:y (2.09) BS01 peptide 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    775538 8bpx:y (2.09) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    775539 8bpx:y (2.09) BS03 COO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    775540 8bpx:z (2.09) BS01 peptide 4.2.1.- GO:0004089 ... Q9FWR5 36585502
    775541 8bpy:A (3.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 36475653
    775542 8bpy:A (3.3) BS02 R4I 3.1.4.35 GO:0004114 ... O76083 36475653
    775543 8bpy:B (3.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 36475653
    775544 8bq2:A (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775545 8bq2:A (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775546 8bq2:A (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775547 8bq2:A (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775548 8bq2:A (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775549 8bq2:B (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775550 8bq2:B (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775551 8bq2:B (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775552 8bq2:B (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775553 8bq2:B (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775554 8bq2:C (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775555 8bq2:C (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775556 8bq2:C (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775557 8bq2:C (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775558 8bq2:C (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775559 8bq2:D (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775560 8bq2:D (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775561 8bq2:D (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775562 8bq2:D (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775563 8bq2:D (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775564 8bq2:E (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775565 8bq2:E (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775566 8bq2:E (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775567 8bq2:E (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775568 8bq2:E (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775569 8bq2:F (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775570 8bq2:F (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775571 8bq2:F (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775572 8bq2:F (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775573 8bq2:F (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775574 8bq2:G (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775575 8bq2:G (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775576 8bq2:G (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775577 8bq2:G (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775578 8bq2:G (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775579 8bq2:H (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775580 8bq2:H (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775581 8bq2:H (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775582 8bq2:H (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    775583 8bq2:H (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    775584 8bq2:I (3.8) BS01 dna ? GO:0000150 ... Q06609 37216117
    775585 8bq2:I (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    775586 8bq2:I (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    775587 8bq3:A (2.66) BS01 peptide N/A N/A N/A N/A
    775588 8bq4:A (2.42) BS01 QZR 2.7.1.149 GO:0046488 ... Q8TBX8 36516442
    775589 8bq4:B (2.42) BS01 QZR 2.7.1.149 GO:0046488 ... Q8TBX8 36516442
    775590 8bq5:AB (2.73) BS01 peptide 3.4.24.64 GO:0000325 ... Q42290 36585502
    775591 8bq5:AB (2.73) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    775592 8bq5:AC (2.73) BS01 HEM ? GO:0005739 ... P42792 36585502
    775593 8bq5:AC (2.73) BS02 HEM ? GO:0005739 ... P42792 36585502
    775594 8bq5:AC (2.73) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    775595 8bq5:AC (2.73) BS04 UQ5 ? GO:0005739 ... P42792 36585502
    775596 8bq5:AD (2.73) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775597 8bq5:AD (2.73) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    775598 8bq5:AE (2.73) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    775599 8bq5:AI (2.73) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    775600 8bq5:B (2.73) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 36585502

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).