SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    775601 8b7y:Z (3.0) BS01 rna ? GO:0002181 ... P0AG48 36603206
    775602 8b7y:a (3.0) BS01 rna ? GO:0002181 ... P61175 36603206
    775603 8b7y:a (3.0) BS02 peptide ? GO:0002181 ... P61175 36603206
    775604 8b7y:b (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 36603206
    775605 8b7y:c (3.0) BS01 rna ? GO:0000027 ... P60624 36603206
    775606 8b7y:d (3.0) BS01 rna ? GO:0000027 ... P68919 36603206
    775607 8b7y:d (3.0) BS02 rna ? GO:0000027 ... P68919 36603206
    775608 8b7y:e (3.0) BS01 rna ? GO:0000027 ... P0A7L8 36603206
    775609 8b7y:e (3.0) BS02 rna ? GO:0000027 ... P0A7L8 36603206
    775610 8b7y:f (3.0) BS01 rna ? GO:0000027 ... P0A7M2 36603206
    775611 8b7y:g (3.0) BS01 rna ? GO:0000027 ... P0A7M6 36603206
    775612 8b7y:h (3.0) BS01 rna ? GO:0000027 ... P0AG51 36603206
    775613 8b7y:i (3.0) BS01 rna ? GO:0000027 ... P0A7N4 36603206
    775614 8b7y:j (3.0) BS01 rna ? GO:0000027 ... P0A7N9 36603206
    775615 8b7y:k (3.0) BS01 rna ? GO:0002181 ... P0A7P5 36603206
    775616 8b7y:l (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 36603206
    775617 8b7y:m (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 36603206
    775618 8b7y:m (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 36603206
    775619 8b7y:o (3.0) BS01 rna ? GO:0000049 ... P0A7R5 36603206
    775620 8b7y:p (3.0) BS01 rna ? GO:0002181 ... P0A7R9 36603206
    775621 8b7y:q (3.0) BS01 rna ? GO:0000049 ... P0A7S3 36603206
    775622 8b7y:r (3.0) BS01 rna ? GO:0000049 ... P0A7S9 36603206
    775623 8b7y:s (3.0) BS01 rna ? GO:0000028 ... P0AG59 36603206
    775624 8b7y:t (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 36603206
    775625 8b7y:t (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 36603206
    775626 8b7y:u (3.0) BS01 rna ? GO:0000028 ... P0A7T3 36603206
    775627 8b7y:v (3.0) BS01 rna ? GO:0000028 ... P0AG63 36603206
    775628 8b7y:w (3.0) BS01 rna ? GO:0002181 ... P0A7T7 36603206
    775629 8b7y:x (3.0) BS01 rna ? GO:0002181 ... P0A7U3 36603206
    775630 8b7y:y (3.0) BS01 rna ? GO:0000028 ... P0A7U7 36603206
    775631 8b7z:A (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775632 8b7z:A (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775633 8b7z:B (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775634 8b7z:B (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775635 8b7z:B (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775636 8b7z:C (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775637 8b7z:C (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775638 8b7z:D (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775639 8b7z:D (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775640 8b7z:E (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775641 8b7z:E (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775642 8b7z:F (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775643 8b7z:F (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775644 8b7z:G (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775645 8b7z:G (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775646 8b7z:H (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775647 8b7z:H (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775648 8b7z:I (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775649 8b7z:I (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775650 8b7z:I (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775651 8b7z:J (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775652 8b7z:K (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775653 8b7z:K (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775654 8b7z:L (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775655 8b7z:L (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775656 8b7z:M (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775657 8b7z:M (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775658 8b7z:M (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775659 8b7z:M (3.0) BS04 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775660 8b7z:M (3.0) BS05 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775661 8b7z:N (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775662 8b7z:N (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775663 8b7z:N (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775664 8b7z:N (3.0) BS04 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775665 8b7z:N (3.0) BS05 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775666 8b7z:O (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775667 8b7z:O (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775668 8b7z:O (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775669 8b7z:O (3.0) BS04 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775670 8b7z:O (3.0) BS05 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775671 8b7z:P (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775672 8b7z:P (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775673 8b7z:P (3.0) BS03 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775674 8b7z:P (3.0) BS04 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775675 8b7z:P (3.0) BS05 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775676 8b7z:Q (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775677 8b7z:Q (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775678 8b7z:R (3.0) BS01 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775679 8b7z:R (3.0) BS02 DQH 5.5.1.6 GO:0045430 ... V9P0A9 36432010
    775680 8b80:A (1.78) BS01 BGP 3.2.1.85 GO:0004553 ... W8QF82 N/A
    775681 8b81:A (1.585) BS01 BGC 3.2.1.85 GO:0004553 ... W8QF82 N/A
    775682 8b81:A (1.585) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    775683 8b81:B (1.585) BS01 BGC 3.2.1.85 GO:0004553 ... W8QF82 N/A
    775684 8b81:B (1.585) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    775685 8b82:A (2.8) BS01 peptide ? N/A Q14160 N/A
    775686 8b82:A (2.8) BS02 peptide ? N/A Q14160 N/A
    775687 8b82:B (2.8) BS01 peptide ? N/A Q14160 N/A
    775688 8b87:A (2.0) BS01 peptide ? N/A Q14160 N/A
    775689 8b87:A (2.0) BS02 peptide ? N/A Q14160 N/A
    775690 8b87:A (2.0) BS03 SDY ? N/A Q14160 N/A
    775691 8b87:B (2.0) BS01 peptide ? N/A Q14160 N/A
    775692 8b87:B (2.0) BS02 peptide ? N/A Q14160 N/A
    775693 8b87:B (2.0) BS03 SDY ? N/A Q14160 N/A
    775694 8b8f:A (1.0) BS01 GAL ? N/A B0D650 36754262
    775695 8b8f:A (1.0) BS02 GAL ? N/A B0D650 36754262
    775696 8b8f:A (1.0) BS03 GAL ? N/A B0D650 36754262
    775697 8b8f:A (1.0) BS04 GAL ? N/A B0D650 36754262
    775698 8b8f:A (1.0) BS05 GAL ? N/A B0D650 36754262
    775699 8b8f:A (1.0) BS06 GAL ? N/A B0D650 36754262
    775700 8b8h:A (1.78) BS01 OJQ 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775701 8b8h:A (1.78) BS02 L7N 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775702 8b8h:A (1.78) BS03 L7N 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775703 8b8h:B (1.78) BS01 OJQ 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775704 8b8h:B (1.78) BS02 L7N 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775705 8b8h:B (1.78) BS03 L7N 5.1.1.1 GO:0003824 ... P9WQA9 37363078
    775706 8b8i:A (2.75) BS01 peptide N/A N/A N/A N/A
    775707 8b8i:B (2.75) BS01 peptide N/A N/A N/A N/A
    775708 8b8i:C (2.75) BS01 peptide N/A N/A N/A N/A
    775709 8b8i:D (2.75) BS01 peptide N/A N/A N/A N/A
    775710 8b8i:E (2.75) BS01 peptide N/A N/A N/A N/A
    775711 8b8i:F (2.75) BS01 peptide N/A N/A N/A N/A
    775712 8b8i:G (2.75) BS01 peptide N/A N/A N/A N/A
    775713 8b8i:H (2.75) BS01 peptide N/A N/A N/A N/A
    775714 8b8j:A (2.96) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775715 8b8j:A (2.96) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775716 8b8j:A (2.96) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775717 8b8j:B (2.96) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775718 8b8j:B (2.96) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775719 8b8j:B (2.96) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775720 8b8k:A (3.01) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775721 8b8k:A (3.01) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775722 8b8k:A (3.01) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775723 8b8k:B (3.01) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775724 8b8k:B (3.01) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775725 8b8k:B (3.01) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775726 8b8m:A (3.49) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775727 8b8m:A (3.49) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775728 8b8m:A (3.49) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775729 8b8m:B (3.49) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775730 8b8m:B (3.49) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775731 8b8m:B (3.49) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775732 8b8n:A (2.0) BS01 AQG 2.7.10.2 GO:0004672 ... O60674 36678572
    775733 8b8o:A (2.9) BS01 peptide ? N/A Q14160 N/A
    775734 8b8o:B (2.9) BS01 peptide ? N/A Q14160 N/A
    775735 8b8q:A (2.94) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775736 8b8q:A (2.94) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775737 8b8q:A (2.94) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775738 8b8q:B (2.94) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    775739 8b8q:B (2.94) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    775740 8b8q:B (2.94) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    775741 8b8u:A (1.5) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 36678572
    775742 8b8u:B (1.5) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 36678572
    775743 8b8w:A (1.86) BS01 peptide ? GO:0003677 ... P37231 36542958
    775744 8b8w:A (1.86) BS02 Q2X ? GO:0003677 ... P37231 36542958
    775745 8b8w:B (1.86) BS01 peptide ? GO:0003677 ... P37231 36542958
    775746 8b8w:B (1.86) BS02 Q2X ? GO:0003677 ... P37231 36542958
    775747 8b8x:A (1.78) BS01 peptide ? GO:0003677 ... P37231 36542958
    775748 8b8x:A (1.78) BS02 A8R ? GO:0003677 ... P37231 36542958
    775749 8b8x:B (1.78) BS01 peptide ? GO:0003677 ... P37231 36542958
    775750 8b8x:B (1.78) BS02 A8R ? GO:0003677 ... P37231 36542958
    775751 8b8y:A (2.0) BS01 peptide ? GO:0003677 ... P37231 36542958
    775752 8b8y:A (2.0) BS02 Q33 ? GO:0003677 ... P37231 36542958
    775753 8b8y:B (2.0) BS01 peptide ? GO:0003677 ... P37231 36542958
    775754 8b8y:B (2.0) BS02 Q33 ? GO:0003677 ... P37231 36542958
    775755 8b8z:A (2.22) BS01 peptide ? GO:0003677 ... P37231 36542958
    775756 8b8z:A (2.22) BS02 Q33 ? GO:0003677 ... P37231 36542958
    775757 8b8z:B (2.22) BS01 peptide ? GO:0003677 ... P37231 36542958
    775758 8b8z:B (2.22) BS02 Q33 ? GO:0003677 ... P37231 36542958
    775759 8b90:A (2.1) BS01 peptide ? GO:0003677 ... P37231 36542958
    775760 8b90:A (2.1) BS02 Q1R ? GO:0003677 ... P37231 36542958
    775761 8b90:B (2.1) BS01 peptide ? GO:0003677 ... P37231 36542958
    775762 8b91:A (2.23) BS01 peptide ? GO:0003677 ... P37231 36542958
    775763 8b91:A (2.23) BS02 Q4O ? GO:0003677 ... P37231 36542958
    775764 8b91:B (2.23) BS01 peptide ? GO:0003677 ... P37231 36542958
    775765 8b92:A (1.66) BS01 peptide ? GO:0003677 ... P37231 36542958
    775766 8b92:A (1.66) BS02 Q5X ? GO:0003677 ... P37231 36542958
    775767 8b92:B (1.66) BS01 peptide ? GO:0003677 ... P37231 36542958
    775768 8b92:B (1.66) BS02 Q5X ? GO:0003677 ... P37231 36542958
    775769 8b93:A (2.21) BS01 peptide ? GO:0003677 ... P37231 36542958
    775770 8b93:A (2.21) BS02 Q8F ? GO:0003677 ... P37231 36542958
    775771 8b93:B (2.21) BS01 peptide ? GO:0003677 ... P37231 36542958
    775772 8b93:B (2.21) BS02 Q8F ? GO:0003677 ... P37231 36542958
    775773 8b94:A (1.55) BS01 peptide ? GO:0003677 ... P37231 36542958
    775774 8b94:A (1.55) BS02 Q5O ? GO:0003677 ... P37231 36542958
    775775 8b94:B (1.55) BS01 peptide ? GO:0003677 ... P37231 36542958
    775776 8b94:B (1.55) BS02 Q5O ? GO:0003677 ... P37231 36542958
    775777 8b95:A (1.72) BS01 peptide ? GO:0003677 ... P37231 36542958
    775778 8b95:A (1.72) BS02 Q4C ? GO:0003677 ... P37231 36542958
    775779 8b95:B (1.72) BS01 peptide ? GO:0003677 ... P37231 36542958
    775780 8b95:B (1.72) BS02 Q4C ? GO:0003677 ... P37231 36542958
    775781 8b96:A (1.338) BS01 Q2F ? N/A O60885 N/A
    775782 8b97:A (0.97) BS01 GAL ? N/A B0D650 36754262
    775783 8b97:A (0.97) BS02 GAL ? N/A B0D650 36754262
    775784 8b97:A (0.97) BS03 GAL ? N/A B0D650 36754262
    775785 8b97:A (0.97) BS04 GAL ? N/A B0D650 36754262
    775786 8b97:A (0.97) BS05 GAL ? N/A B0D650 36754262
    775787 8b98:A (1.495) BS01 Q2F ? N/A O60885 N/A
    775788 8b99:A (1.6) BS01 SKE 2.7.10.2 GO:0004672 ... O60674 36678572
    775789 8b9a:2 (3.5) BS01 ANP 3.6.4.12 GO:0000727 ... P29469 37506699
    775790 8b9a:2 (3.5) BS02 MG 3.6.4.12 GO:0000727 ... P29469 37506699
    775791 8b9a:3 (3.5) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37506699
    775792 8b9a:3 (3.5) BS02 ANP 3.6.4.12 GO:0000727 ... P24279 37506699
    775793 8b9a:3 (3.5) BS03 ANP 3.6.4.12 GO:0000727 ... P24279 37506699
    775794 8b9a:4 (3.5) BS01 dna 3.6.4.12 GO:0000727 ... P30665 37506699
    775795 8b9a:4 (3.5) BS02 dna 3.6.4.12 GO:0000727 ... P30665 37506699
    775796 8b9a:4 (3.5) BS03 ANP 3.6.4.12 GO:0000727 ... P30665 37506699
    775797 8b9a:4 (3.5) BS04 ZN 3.6.4.12 GO:0000727 ... P30665 37506699
    775798 8b9a:5 (3.5) BS01 dna 3.6.4.12 GO:0000727 ... P29496 37506699
    775799 8b9a:5 (3.5) BS02 ANP 3.6.4.12 GO:0000727 ... P29496 37506699
    775800 8b9a:5 (3.5) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37506699

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).