SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    775801 8bqe:A (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775802 8bqe:A (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775803 8bqe:A (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775804 8bqe:A (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775805 8bqe:B (3.5) BS01 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775806 8bqe:B (3.5) BS02 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775807 8bqe:B (3.5) BS03 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775808 8bqe:B (3.5) BS04 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775809 8bqe:B (3.5) BS05 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775810 8bqe:B (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775811 8bqe:B (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775812 8bqe:B (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775813 8bqe:B (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775814 8bqe:C (3.5) BS01 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775815 8bqe:C (3.5) BS02 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775816 8bqe:C (3.5) BS03 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775817 8bqe:C (3.5) BS04 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775818 8bqe:C (3.5) BS05 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775819 8bqe:C (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775820 8bqe:C (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775821 8bqe:C (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775822 8bqe:C (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775823 8bqe:D (3.5) BS01 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775824 8bqe:D (3.5) BS02 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775825 8bqe:D (3.5) BS03 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775826 8bqe:D (3.5) BS04 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775827 8bqe:D (3.5) BS05 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775828 8bqe:D (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775829 8bqe:D (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775830 8bqe:D (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775831 8bqe:D (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775832 8bqe:E (3.5) BS01 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775833 8bqe:E (3.5) BS02 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775834 8bqe:E (3.5) BS03 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775835 8bqe:E (3.5) BS04 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775836 8bqe:E (3.5) BS05 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775837 8bqe:E (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775838 8bqe:E (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775839 8bqe:E (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775840 8bqe:E (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775841 8bqe:F (3.5) BS01 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775842 8bqe:F (3.5) BS02 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775843 8bqe:F (3.5) BS03 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775844 8bqe:F (3.5) BS04 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775845 8bqe:F (3.5) BS05 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775846 8bqe:F (3.5) BS06 MRH ? GO:0005509 ... A0A0H3C8J1 36468689
    775847 8bqe:F (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775848 8bqe:F (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775849 8bqe:F (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    775850 8bqf:A (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775851 8bqf:B (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775852 8bqf:C (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775853 8bqf:D (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775854 8bqf:E (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775855 8bqf:F (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    775856 8bqg:A (1.946) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775857 8bqg:A (1.946) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775858 8bqg:A (1.946) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775859 8bqg:B (1.946) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775860 8bqg:B (1.946) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775861 8bqg:B (1.946) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775862 8bqh:A (1.61) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775863 8bqh:A (1.61) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775864 8bqh:A (1.61) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775865 8bqh:B (1.61) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775866 8bqh:B (1.61) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775867 8bqh:B (1.61) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775868 8bqi:A (2.356) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775869 8bqi:A (2.356) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775870 8bqi:A (2.356) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775871 8bqi:B (2.356) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775872 8bqi:B (2.356) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775873 8bqi:B (2.356) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775874 8bqj:A (2.107) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775875 8bqj:A (2.107) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775876 8bqj:A (2.107) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775877 8bqj:B (2.107) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775878 8bqj:B (2.107) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775879 8bqj:B (2.107) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775880 8bqk:A (1.587) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775881 8bqk:A (1.587) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775882 8bqk:A (1.587) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775883 8bqk:B (1.587) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775884 8bqk:B (1.587) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775885 8bqk:B (1.587) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775886 8bql:A (1.906) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775887 8bql:A (1.906) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775888 8bql:A (1.906) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 36613918
    775889 8bql:B (1.906) BS01 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775890 8bql:B (1.906) BS02 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775891 8bql:B (1.906) BS03 SF4 ? GO:0030313 ... Q72EJ0 36613918
    775892 8bqm:AAA (1.17) BS01 ACT 3.2.1.17 GO:0003796 ... P00698 36597851
    775893 8bqp:A (1.24) BS01 U7U 3.2.1.17 GO:0003796 ... P00698 37102318
    775894 8bqq:A (1.57) BS01 RJU 3.2.1.17 GO:0003796 ... P00698 37102318
    775895 8bqr:A (2.32) BS01 R9H 3.2.1.17 GO:0003796 ... P00698 37102318
    775896 8bqs:A0 (2.9) BS01 UDP 2.4.1.182 GO:0005543 ... Q22E24 36949187
    775897 8bqs:A1 (2.9) BS01 NDP ? GO:0005739 ... I7MLH2 36949187
    775898 8bqs:A5 (2.9) BS01 ADP ? N/A I7MIJ7 36949187
    775899 8bqs:A8 (2.9) BS01 ADP N/A N/A N/A 36949187
    775900 8bqs:AB (2.9) BS01 FES ? GO:0008137 ... Q23KA9 36949187
    775901 8bqs:AB (2.9) BS02 SF4 ? GO:0008137 ... Q23KA9 36949187
    775902 8bqs:AB (2.9) BS03 SF4 ? GO:0008137 ... Q23KA9 36949187
    775903 8bqs:AD (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... Q23KE4 36949187
    775904 8bqs:AD (2.9) BS02 FMN 7.1.1.2 GO:0005739 ... Q23KE4 36949187
    775905 8bqs:AE (2.9) BS01 ADP 1.6.5.3 GO:0005739 ... Q951B1 36949187
    775906 8bqs:AI (2.9) BS01 FES ? GO:0003954 ... I7MEP0 36949187
    775907 8bqs:AL (2.9) BS01 SF4 ? GO:0003954 ... I7MDW5 36949187
    775908 8bqs:AL (2.9) BS02 SF4 ? GO:0003954 ... I7MDW5 36949187
    775909 8bqs:AQ (2.9) BS01 ADP ? N/A Q233X7 36949187
    775910 8bqs:AS (2.9) BS01 8Q1 ? GO:0005739 ... I7M2Y3 36949187
    775911 8bqs:AT (2.9) BS01 SF4 1.6.5.3 GO:0005739 ... Q951B4 36949187
    775912 8bqs:BC (2.9) BS01 ADP ? N/A I7M855 36949187
    775913 8bqs:BI (2.9) BS01 FES ? GO:0005739 ... Q22W11 36949187
    775914 8bqs:BR (2.9) BS01 ZN ? GO:0005739 ... I7MK02 36949187
    775915 8bqs:C (2.9) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775916 8bqs:C (2.9) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775917 8bqs:C (2.9) BS03 UQ8 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775918 8bqs:C (2.9) BS04 UQ8 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775919 8bqs:CA (2.9) BS01 CA 1.3.5.1 GO:0005743 ... Q23DI3 36949187
    775920 8bqs:CA (2.9) BS02 FAD 1.3.5.1 GO:0005743 ... Q23DI3 36949187
    775921 8bqs:CB (2.9) BS01 FES 1.3.5.1 GO:0005743 ... I7M403 36949187
    775922 8bqs:CB (2.9) BS02 SF4 1.3.5.1 GO:0005743 ... I7M403 36949187
    775923 8bqs:CB (2.9) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 36949187
    775924 8bqs:CB (2.9) BS04 CA 1.3.5.1 GO:0005743 ... I7M403 36949187
    775925 8bqs:CC (2.9) BS01 UQ8 ? N/A Q23RH8 36949187
    775926 8bqs:CE (2.9) BS01 HEC ? N/A Q24I09 36949187
    775927 8bqs:CN (2.9) BS01 UQ8 ? GO:0016020 ... W7XF00 36949187
    775928 8bqs:D (2.9) BS01 HEC ? GO:0005739 ... Q24IM5 36949187
    775929 8bqs:DA (2.9) BS01 CA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775930 8bqs:DA (2.9) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775931 8bqs:DA (2.9) BS03 HEA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775932 8bqs:DA (2.9) BS04 CU 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775933 8bqs:DA (2.9) BS05 MG 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775934 8bqs:DA (2.9) BS06 UQ8 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775935 8bqs:DA (2.9) BS07 UQ8 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775936 8bqs:DB (2.9) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y9 36949187
    775937 8bqs:DB (2.9) BS02 CUA 7.1.1.9 GO:0004129 ... Q950Y9 36949187
    775938 8bqs:DB (2.9) BS03 ATP 7.1.1.9 GO:0004129 ... Q950Y9 36949187
    775939 8bqs:DD (2.9) BS01 ZN ? GO:0005740 ... Q23FF5 36949187
    775940 8bqs:DE (2.9) BS01 UQ8 ? GO:0016020 ... W7XCY5 36949187
    775941 8bqs:DF (2.9) BS01 ATP ? N/A Q24I72 36949187
    775942 8bqs:DS (2.9) BS01 UQ8 ? GO:0016020 ... A4VDV3 36949187
    775943 8bqs:DS (2.9) BS02 UQ8 ? GO:0016020 ... A4VDV3 36949187
    775944 8bqs:Da (2.9) BS01 CA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775945 8bqs:Da (2.9) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775946 8bqs:Da (2.9) BS03 HEA 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775947 8bqs:Da (2.9) BS04 CU 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775948 8bqs:Da (2.9) BS05 MG 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775949 8bqs:Da (2.9) BS06 UQ8 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775950 8bqs:Da (2.9) BS07 UQ8 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    775951 8bqs:Db (2.9) BS01 CUA 7.1.1.9 GO:0004129 ... Q950Y9 36949187
    775952 8bqs:Db (2.9) BS02 ATP 7.1.1.9 GO:0004129 ... Q950Y9 36949187
    775953 8bqs:Dd (2.9) BS01 ZN ? GO:0005740 ... Q23FF5 36949187
    775954 8bqs:Ds (2.9) BS01 UQ8 ? GO:0016020 ... A4VDV3 36949187
    775955 8bqs:Ds (2.9) BS02 UQ8 ? GO:0016020 ... A4VDV3 36949187
    775956 8bqs:E (2.9) BS01 FES ? GO:0016020 ... I7MIC7 36949187
    775957 8bqs:ED (2.9) BS01 HEM ? GO:0005739 ... Q951A7 36949187
    775958 8bqs:ED (2.9) BS02 UQ8 ? GO:0005739 ... Q951A7 36949187
    775959 8bqs:EF (2.9) BS01 FES ? GO:0005737 ... I7M8P0 36949187
    775960 8bqs:EF (2.9) BS02 FES ? GO:0005737 ... I7M8P0 36949187
    775961 8bqs:EL (2.9) BS01 UQ8 ? GO:0016020 ... Q23VY4 36949187
    775962 8bqs:EN (2.9) BS01 UQ8 ? N/A I7MFV5 36949187
    775963 8bqs:ER (2.9) BS01 ATP ? N/A I7M9E7 36949187
    775964 8bqs:Ed (2.9) BS01 HEM ? GO:0005739 ... Q951A7 36949187
    775965 8bqs:Ed (2.9) BS02 UQ8 ? GO:0005739 ... Q951A7 36949187
    775966 8bqs:Ef (2.9) BS01 FES ? GO:0005737 ... I7M8P0 36949187
    775967 8bqs:Ef (2.9) BS02 FES ? GO:0005737 ... I7M8P0 36949187
    775968 8bqs:Ek (2.9) BS01 UQ8 ? N/A Q230X6 36949187
    775969 8bqs:El (2.9) BS01 UQ8 ? GO:0016020 ... Q23VY4 36949187
    775970 8bqs:En (2.9) BS01 UQ8 ? N/A I7MFV5 36949187
    775971 8bqs:Er (2.9) BS01 ATP ? N/A I7M9E7 36949187
    775972 8bqs:c (2.9) BS01 UQ8 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775973 8bqs:c (2.9) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775974 8bqs:c (2.9) BS03 HEM 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775975 8bqs:c (2.9) BS04 UQ8 1.10.2.2 GO:0005739 ... Q950Z1 36949187
    775976 8bqs:d (2.9) BS01 HEC ? GO:0005739 ... Q24IM5 36949187
    775977 8bqs:e (2.9) BS01 FES ? GO:0016020 ... I7MIC7 36949187
    775978 8bqt:A (1.47) BS01 U7U 3.2.1.17 GO:0003796 ... P00698 37102318
    775979 8bqt:A (1.47) BS02 U7U 3.2.1.17 GO:0003796 ... P00698 37102318
    775980 8bqx:A (3.8) BS01 rna ? GO:0000054 ... P05750 37079644
    775981 8bqx:AA (3.8) BS01 rna ? GO:0000470 ... P17076 37079644
    775982 8bqx:AA (3.8) BS02 rna ? GO:0000470 ... P17076 37079644
    775983 8bqx:AB (3.8) BS01 rna ? GO:0002181 ... P0CX41 37079644
    775984 8bqx:AB (3.8) BS02 rna ? GO:0002181 ... P0CX41 37079644
    775985 8bqx:AC (3.8) BS01 rna ? GO:0002181 ... P05745 37079644
    775986 8bqx:AD (3.8) BS01 rna ? GO:0002181 ... P05738 37079644
    775987 8bqx:AE (3.8) BS01 rna ? GO:0003735 ... P04449 37079644
    775988 8bqx:AE (3.8) BS02 rna ? GO:0003735 ... P04449 37079644
    775989 8bqx:AF (3.8) BS01 rna ? GO:0000448 ... P49166 37079644
    775990 8bqx:AF (3.8) BS02 rna ? GO:0000448 ... P49166 37079644
    775991 8bqx:AF (3.8) BS03 ZN ? GO:0000448 ... P49166 37079644
    775992 8bqx:AG (3.8) BS01 rna ? GO:0000027 ... P0C0W9 37079644
    775993 8bqx:AG (3.8) BS02 rna ? GO:0000027 ... P0C0W9 37079644
    775994 8bqx:AH (3.8) BS01 rna ? GO:0003735 ... P04456 37079644
    775995 8bqx:AH (3.8) BS02 rna ? GO:0003735 ... P04456 37079644
    775996 8bqx:AI (3.8) BS01 rna ? GO:0002181 ... P49167 37079644
    775997 8bqx:AJ (3.8) BS01 rna ? GO:0002181 ... Q12690 37079644
    775998 8bqx:AJ (3.8) BS02 rna ? GO:0002181 ... Q12690 37079644
    775999 8bqx:AK (3.8) BS01 rna ? GO:0002181 ... P05743 37079644
    776000 8bqx:AK (3.8) BS02 rna ? GO:0002181 ... P05743 37079644

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).