SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    776001 8bqx:AL (3.8) BS01 rna ? GO:0002181 ... P04650 37079644
    776002 8bqx:AL (3.8) BS02 rna ? GO:0002181 ... P04650 37079644
    776003 8bqx:AM (3.8) BS01 rna ? GO:0000027 ... P36105 37079644
    776004 8bqx:AN (3.8) BS01 rna ? GO:0002181 ... P0C2H6 37079644
    776005 8bqx:AO (3.8) BS01 rna ? GO:0003735 ... P0CH08 37079644
    776006 8bqx:AO (3.8) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    776007 8bqx:AP (3.8) BS01 rna ? GO:0002181 ... P0CX27 37079644
    776008 8bqx:AP (3.8) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    776009 8bqx:AQ (3.8) BS01 rna ? GO:0002181 ... P05748 37079644
    776010 8bqx:AQ (3.8) BS02 rna ? GO:0002181 ... P05748 37079644
    776011 8bqx:AR (3.8) BS01 rna ? GO:0002181 ... P02406 37079644
    776012 8bqx:AT (3.8) BS01 rna ? GO:0002181 ... P0CX25 37079644
    776013 8bqx:AT (3.8) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    776014 8bqx:AU (3.8) BS01 rna ? GO:0000470 ... P26784 37079644
    776015 8bqx:AV (3.8) BS01 rna ? GO:0002181 ... P05747 37079644
    776016 8bqx:AW (3.8) BS01 rna ? GO:0002181 ... P0CX45 37079644
    776017 8bqx:AX (3.8) BS01 rna ? GO:0000448 ... P05740 37079644
    776018 8bqx:AX (3.8) BS02 rna ? GO:0000448 ... P05740 37079644
    776019 8bqx:AY (3.8) BS01 rna ? GO:0002181 ... P14120 37079644
    776020 8bqx:B (3.8) BS01 rna ? GO:0000028 ... P26783 37079644
    776021 8bqx:BA (3.8) BS01 rna ? GO:0000027 ... P14126 37079644
    776022 8bqx:BB (3.8) BS01 rna ? GO:0002181 ... P0CX49 37079644
    776023 8bqx:BC (3.8) BS01 rna ? GO:0002181 ... P0C2H8 37079644
    776024 8bqx:BD (3.8) BS01 rna ? GO:0000027 ... P41805 37079644
    776025 8bqx:BD (3.8) BS02 rna ? GO:0000027 ... P41805 37079644
    776026 8bqx:BE (3.8) BS01 rna ? GO:0002181 ... P10664 37079644
    776027 8bqx:BE (3.8) BS02 rna ? GO:0002181 ... P10664 37079644
    776028 8bqx:BF (3.8) BS01 rna ? GO:0002181 ... P0CX82 37079644
    776029 8bqx:BF (3.8) BS02 rna ? GO:0002181 ... P0CX82 37079644
    776030 8bqx:BG (3.8) BS01 rna ? GO:0002181 ... P38061 37079644
    776031 8bqx:BH (3.8) BS01 rna ? GO:0002181 ... P0CX23 37079644
    776032 8bqx:BH (3.8) BS02 rna ? GO:0002181 ... P0CX23 37079644
    776033 8bqx:BI (3.8) BS01 rna ? GO:0000027 ... P26321 37079644
    776034 8bqx:BI (3.8) BS02 rna ? GO:0000027 ... P26321 37079644
    776035 8bqx:BJ (3.8) BS01 rna ? GO:0002181 ... Q02753 37079644
    776036 8bqx:BJ (3.8) BS02 rna ? GO:0002181 ... Q02753 37079644
    776037 8bqx:BK (3.8) BS01 rna ? GO:0000027 ... P05744 37079644
    776038 8bqx:BL (3.8) BS01 rna ? GO:0003735 ... P05749 37079644
    776039 8bqx:BM (3.8) BS01 rna ? GO:0000027 ... P05739 37079644
    776040 8bqx:BN (3.8) BS01 rna ? GO:0002181 ... P87262 37079644
    776041 8bqx:BN (3.8) BS02 ZN ? GO:0002181 ... P87262 37079644
    776042 8bqx:BO (3.8) BS01 rna ? GO:0000463 ... P05737 37079644
    776043 8bqx:BO (3.8) BS02 rna ? GO:0000463 ... P05737 37079644
    776044 8bqx:BP (3.8) BS01 rna ? GO:0000463 ... P0CX84 37079644
    776045 8bqx:BP (3.8) BS02 rna ? GO:0000463 ... P0CX84 37079644
    776046 8bqx:BT (3.8) BS01 rna ? GO:0000055 ... P0CX43 37079644
    776047 8bqx:C (3.8) BS01 rna ? N/A Q08745 37079644
    776048 8bqx:D (3.8) BS01 rna ? GO:0003735 ... P48589 37079644
    776049 8bqx:E (3.8) BS01 rna ? GO:0000028 ... Q01855 37079644
    776050 8bqx:F (3.8) BS01 rna ? GO:0000462 ... P0CX51 37079644
    776051 8bqx:G (3.8) BS01 rna ? GO:0000028 ... P02407 37079644
    776052 8bqx:H (3.8) BS01 rna ? GO:0000054 ... P0CX55 37079644
    776053 8bqx:I (3.8) BS01 rna ? GO:0000028 ... P07280 37079644
    776054 8bqx:J (3.8) BS01 rna ? GO:0003723 ... P38701 37079644
    776055 8bqx:K (3.8) BS01 rna ? N/A Q3E792 37079644
    776056 8bqx:L (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 37079644
    776057 8bqx:M (3.8) BS01 rna ? GO:0002181 ... P41057 37079644
    776058 8bqx:M (3.8) BS02 ZN ? GO:0002181 ... P41057 37079644
    776059 8bqx:N (3.8) BS01 rna ? GO:0003735 ... P05759 37079644
    776060 8bqx:N (3.8) BS02 ZN ? GO:0003735 ... P05759 37079644
    776061 8bqx:O (3.8) BS01 rna ? GO:0001965 ... P38011 37079644
    776062 8bqx:P (3.8) BS01 rna ? GO:0003735 ... P32905 37079644
    776063 8bqx:Q (3.8) BS01 rna ? GO:0000462 ... P33442 37079644
    776064 8bqx:R (3.8) BS01 rna ? GO:0003723 ... P25443 37079644
    776065 8bqx:S (3.8) BS01 rna ? GO:0002181 ... P0CX35 37079644
    776066 8bqx:T (3.8) BS01 rna ? GO:0000462 ... P0CX37 37079644
    776067 8bqx:U (3.8) BS01 rna ? GO:0002181 ... P26786 37079644
    776068 8bqx:V (3.8) BS01 rna ? GO:0000462 ... P0CX39 37079644
    776069 8bqx:V (3.8) BS02 rna ? GO:0000462 ... P0CX39 37079644
    776070 8bqx:W (3.8) BS01 rna ? GO:0000462 ... O13516 37079644
    776071 8bqx:X (3.8) BS01 rna ? GO:0000028 ... P0CX47 37079644
    776072 8bqx:Y (3.8) BS01 rna ? GO:0000462 ... P05756 37079644
    776073 8bqx:Y (3.8) BS02 rna ? GO:0000462 ... P05756 37079644
    776074 8bqx:Z (3.8) BS01 rna ? GO:0000028 ... P39516 37079644
    776075 8bqx:a (3.8) BS01 rna ? GO:0000447 ... P0C0V8 37079644
    776076 8bqx:b (3.8) BS01 rna ? GO:0002181 ... P0C0W1 37079644
    776077 8bqx:c (3.8) BS01 rna ? GO:0000462 ... P0CX29 37079644
    776078 8bqx:d (3.8) BS01 rna ? GO:0000462 ... P0CX31 37079644
    776079 8bqx:e (3.8) BS01 rna ? GO:0003735 ... P39939 37079644
    776080 8bqx:f (3.8) BS01 rna ? GO:0000028 ... P35997 37079644
    776081 8bqx:g (3.8) BS01 rna ? GO:0002181 ... P0CX33 37079644
    776082 8bqx:x (3.8) BS01 rna 3.4.11.18 GO:0003729 ... Q01662 37079644
    776083 8br0:A (2.218) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    776084 8br0:A (2.218) BS02 ADP 3.6.4.- GO:0000287 ... P68135 37747912
    776085 8br0:B (2.218) BS01 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776086 8br0:B (2.218) BS02 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776087 8br0:B (2.218) BS03 CH1 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776088 8br0:C (2.218) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    776089 8br0:C (2.218) BS02 ADP 3.6.4.- GO:0000287 ... P68135 37747912
    776090 8br0:D (2.218) BS01 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776091 8br0:D (2.218) BS02 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776092 8br0:D (2.218) BS03 CH1 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    776093 8br1:A (2.044) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    776094 8br1:A (2.044) BS02 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    776095 8br1:B (2.044) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776096 8br1:B (2.044) BS02 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776097 8br1:B (2.044) BS03 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776098 8br1:C (2.044) BS01 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    776099 8br1:C (2.044) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    776100 8br1:D (2.044) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776101 8br1:D (2.044) BS02 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776102 8br1:D (2.044) BS03 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    776103 8br2:A (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776104 8br2:A (2.9) BS02 CA ? GO:0000150 ... Q06609 37216117
    776105 8br2:A (2.9) BS03 ATP ? GO:0000150 ... Q06609 37216117
    776106 8br2:A (2.9) BS04 CA ? GO:0000150 ... Q06609 37216117
    776107 8br2:A (2.9) BS05 ATP ? GO:0000150 ... Q06609 37216117
    776108 8br2:B (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776109 8br2:B (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    776110 8br2:B (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    776111 8br2:B (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    776112 8br2:B (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    776113 8br2:B (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    776114 8br2:C (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776115 8br2:C (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    776116 8br2:C (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    776117 8br2:C (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    776118 8br2:C (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    776119 8br2:C (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    776120 8br2:D (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776121 8br2:D (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    776122 8br2:D (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    776123 8br2:D (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    776124 8br2:D (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    776125 8br2:D (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    776126 8br2:E (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776127 8br2:E (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    776128 8br2:E (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    776129 8br2:E (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    776130 8br2:E (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    776131 8br2:E (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    776132 8br2:F (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    776133 8br2:F (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    776134 8br2:F (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    776135 8br2:F (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    776136 8br4:A (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776137 8br4:B (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776138 8br4:C (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776139 8br4:D (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776140 8br4:E (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776141 8br4:F (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776142 8br4:G (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776143 8br4:H (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776144 8br4:I (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776145 8br4:J (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776146 8br4:K (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776147 8br4:L (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776148 8br4:M (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776149 8br4:N (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776150 8br4:O (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776151 8br4:P (3.29) BS01 NAD 1.2.1.12 GO:0000166 ... P9WN83 39436721
    776152 8br5:AAA (2.7) BS01 R73 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776153 8br5:BBB (2.7) BS01 R73 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776154 8br5:CCC (2.7) BS01 R73 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776155 8br5:DDD (2.7) BS01 R73 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776156 8br6:AAA (2.167) BS01 R6I 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776157 8br6:BBB (2.167) BS01 R6I 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776158 8br7:AAA (2.119) BS01 R6R 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776159 8br7:BBB (2.119) BS01 R6R 2.7.11.1 GO:0000287 ... Q9NWZ3 38228402
    776160 8br8:LA (3.35) BS01 rna ? GO:0002181 ... E2RTN4 36912103
    776161 8br8:LA (3.35) BS02 rna ? GO:0002181 ... E2RTN4 36912103
    776162 8br8:LB (3.35) BS01 rna ? GO:0003723 ... A8BRZ3 36912103
    776163 8br8:LC (3.35) BS01 rna ? GO:0003723 ... A8B7H8 36912103
    776164 8br8:LC (3.35) BS02 rna ? GO:0003723 ... A8B7H8 36912103
    776165 8br8:LF (3.35) BS01 rna ? GO:0000027 ... E2RU47 36912103
    776166 8br8:LF (3.35) BS02 rna ? GO:0000027 ... E2RU47 36912103
    776167 8br8:LG (3.35) BS01 rna ? GO:0003735 ... A0A644EZB9 36912103
    776168 8br8:LG (3.35) BS02 rna ? GO:0003735 ... A0A644EZB9 36912103
    776169 8br8:LH (3.35) BS01 rna ? GO:0000463 ... A8BRY6 36912103
    776170 8br8:LH (3.35) BS02 rna ? GO:0000463 ... A8BRY6 36912103
    776171 8br8:LI (3.35) BS01 rna ? GO:0000470 ... A8BLL7 36912103
    776172 8br8:LI (3.35) BS02 rna ? GO:0000470 ... A8BLL7 36912103
    776173 8br8:LJ (3.35) BS01 rna ? GO:0002181 ... A8BNT5 36912103
    776174 8br8:LK (3.35) BS01 rna ? GO:0003735 ... A8BM86 36912103
    776175 8br8:LK (3.35) BS02 rna ? GO:0003735 ... A8BM86 36912103
    776176 8br8:LL (3.35) BS01 rna ? GO:0003723 ... A8BI95 36912103
    776177 8br8:LL (3.35) BS02 rna ? GO:0003723 ... A8BI95 36912103
    776178 8br8:LM (3.35) BS01 rna ? GO:0003735 ... N/A 36912103
    776179 8br8:LM (3.35) BS02 rna ? GO:0003735 ... N/A 36912103
    776180 8br8:LN (3.35) BS01 rna ? GO:0003723 ... A8B4F8 36912103
    776181 8br8:LO (3.35) BS01 rna ? GO:0002181 ... A8B8Z6 36912103
    776182 8br8:LO (3.35) BS02 rna ? GO:0002181 ... A8B8Z6 36912103
    776183 8br8:LP (3.35) BS01 rna ? GO:0003729 ... A8BU75 36912103
    776184 8br8:LQ (3.35) BS01 rna ? GO:0002181 ... A8BE76 36912103
    776185 8br8:LQ (3.35) BS02 rna ? GO:0002181 ... A8BE76 36912103
    776186 8br8:LR (3.35) BS01 rna ? GO:0003723 ... A8B4T7 36912103
    776187 8br8:LS (3.35) BS01 rna ? GO:0003723 ... A8BH61 36912103
    776188 8br8:LS (3.35) BS02 rna ? GO:0003723 ... A8BH61 36912103
    776189 8br8:LT (3.35) BS01 rna ? GO:0002181 ... A0A644FBU1 36912103
    776190 8br8:LT (3.35) BS02 rna ? GO:0002181 ... A0A644FBU1 36912103
    776191 8br8:LU (3.35) BS01 rna ? GO:0003735 ... A8B2Q4 36912103
    776192 8br8:LU (3.35) BS02 rna ? GO:0003735 ... A8B2Q4 36912103
    776193 8br8:LV (3.35) BS01 rna ? GO:0002181 ... A0A644FC41 36912103
    776194 8br8:LW (3.35) BS01 rna ? GO:0003735 ... A8BS37 36912103
    776195 8br8:LX (3.35) BS01 rna ? GO:0003735 ... A8B7P2 36912103
    776196 8br8:LY (3.35) BS01 rna ? GO:0003735 ... A8BMP6 36912103
    776197 8br8:LY (3.35) BS02 rna ? GO:0003735 ... A8BMP6 36912103
    776198 8br8:LZ (3.35) BS01 rna ? GO:0002181 ... A8BFT3 36912103
    776199 8br8:LZ (3.35) BS02 rna ? GO:0002181 ... A8BFT3 36912103
    776200 8br8:La (3.35) BS01 rna ? GO:0003735 ... A8B1T3 36912103

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).