SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    776601 8bsj:SI (6.49) BS02 rna ? GO:0000462 ... A8B252 36912103
    776602 8bsj:SJ (6.49) BS01 rna ? GO:0003735 ... E2RU77 36912103
    776603 8bsj:SK (6.49) BS01 rna ? GO:0003723 ... A8BKS8 36912103
    776604 8bsj:SL (6.49) BS01 rna ? GO:0003723 ... A8BRX3 36912103
    776605 8bsj:SM (6.49) BS01 rna ? GO:0003735 ... A8BVU0 36912103
    776606 8bsj:SO (6.49) BS01 rna ? GO:0003735 ... V6T9I6 36912103
    776607 8bsj:SO (6.49) BS02 rna ? GO:0003735 ... V6T9I6 36912103
    776608 8bsj:SP (6.49) BS01 rna ? GO:0003735 ... A8BE02 36912103
    776609 8bsj:SQ (6.49) BS01 rna ? GO:0000028 ... E2RU83 36912103
    776610 8bsj:SR (6.49) BS01 rna ? GO:0000028 ... A8BBP3 36912103
    776611 8bsj:ST (6.49) BS01 rna ? GO:0000462 ... A8BKC6 36912103
    776612 8bsj:SU (6.49) BS01 rna ? GO:0003735 ... A8BRG5 36912103
    776613 8bsj:SV (6.49) BS01 rna ? GO:0003676 ... A8BZ58 36912103
    776614 8bsj:SV (6.49) BS02 rna ? GO:0003676 ... A8BZ58 36912103
    776615 8bsj:SW (6.49) BS01 rna ? GO:0000028 ... A0A644F964 36912103
    776616 8bsj:SX (6.49) BS01 rna ? GO:0003735 ... A8B4G0 36912103
    776617 8bsj:Sb (6.49) BS01 rna ? GO:0003735 ... A8B593 36912103
    776618 8bsj:Sc (6.49) BS01 rna ? GO:0003735 ... A8B8H7 36912103
    776619 8bsj:Sd (6.49) BS01 rna ? GO:0003729 ... A8BQZ7 36912103
    776620 8bsj:Se (6.49) BS01 rna ? GO:0000028 ... A0A644F5K9 36912103
    776621 8bsj:Sg (6.49) BS01 rna ? GO:0000028 ... A8B4F3 36912103
    776622 8bsj:Sh (6.49) BS01 rna ? GO:0002181 ... A0A644FA19 36912103
    776623 8bsj:Sj (6.49) BS01 rna ? GO:0003735 ... A0A644F843 36912103
    776624 8bsj:Sj (6.49) BS02 rna ? GO:0003735 ... A0A644F843 36912103
    776625 8bsk:A (2.1) BS01 04A 3.5.1.2 GO:0004359 ... O94925 31199640
    776626 8bsl:A (2.38) BS01 R90 3.5.1.2 GO:0004359 ... O94925 31199640
    776627 8bsl:B (2.38) BS01 R90 3.5.1.2 GO:0004359 ... O94925 31199640
    776628 8bsl:C (2.38) BS01 R90 3.5.1.2 GO:0004359 ... O94925 31199640
    776629 8bsl:D (2.38) BS01 R90 3.5.1.2 GO:0004359 ... O94925 31199640
    776630 8bsm:A (2.782) BS01 5XX 3.5.1.2 GO:0004359 ... O94925 31199640
    776631 8bsn:A (2.494) BS01 R0C 3.5.1.2 GO:0004359 ... O94925 31199640
    776632 8bso:C (1.92) BS01 GAL N/A N/A N/A N/A
    776633 8bso:C (1.92) BS02 SIA N/A N/A N/A N/A
    776634 8bso:D (1.92) BS01 SL9 N/A N/A N/A N/A
    776635 8bso:H (1.92) BS01 SIA N/A N/A N/A N/A
    776636 8bso:L (1.92) BS01 SL9 N/A N/A N/A N/A
    776637 8bsp:A (1.55) BS01 RD9 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776638 8bsq:A (1.45) BS01 RDO 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776639 8bsr:A (1.45) BS01 RCU 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776640 8bss:A (-1.00) BS01 peptide ? GO:0001530 ... P0ADV1 37224246
    776641 8bst:A (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    776642 8bst:A (2.7) BS02 KAI ? GO:0015276 ... P42264 38145505
    776643 8bst:B (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    776644 8bst:B (2.7) BS02 ZN ? GO:0015276 ... P42264 38145505
    776645 8bst:B (2.7) BS03 KAI ? GO:0015276 ... P42264 38145505
    776646 8bst:C (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    776647 8bst:C (2.7) BS02 KAI ? GO:0015276 ... P42264 38145505
    776648 8bst:D (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    776649 8bst:D (2.7) BS02 CL ? GO:0015276 ... P42264 38145505
    776650 8bst:D (2.7) BS03 KAI ? GO:0015276 ... P42264 38145505
    776651 8bsu:A (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776652 8bsu:A (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    776653 8bsu:A (2.9) BS03 KAI ? GO:0015276 ... P42264 38145505
    776654 8bsu:A (2.9) BS04 2J9 ? GO:0015276 ... P42264 38145505
    776655 8bsu:B (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776656 8bsu:B (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    776657 8bsu:B (2.9) BS03 KAI ? GO:0015276 ... P42264 38145505
    776658 8bsu:B (2.9) BS04 2J9 ? GO:0015276 ... P42264 38145505
    776659 8bsu:C (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776660 8bsu:C (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    776661 8bsu:C (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776662 8bsu:C (2.9) BS04 KAI ? GO:0015276 ... P42264 38145505
    776663 8bsu:D (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776664 8bsu:D (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    776665 8bsu:D (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776666 8bsu:D (2.9) BS04 KAI ? GO:0015276 ... P42264 38145505
    776667 8bsu:E (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776668 8bsu:E (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    776669 8bsu:E (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776670 8bsu:E (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    776671 8bsu:E (2.9) BS05 KAI ? GO:0015276 ... P42264 38145505
    776672 8bsu:F (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776673 8bsu:F (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    776674 8bsu:F (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776675 8bsu:F (2.9) BS04 KAI ? GO:0015276 ... P42264 38145505
    776676 8bsu:F (2.9) BS05 2J9 ? GO:0015276 ... P42264 38145505
    776677 8bsu:G (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776678 8bsu:G (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    776679 8bsu:G (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776680 8bsu:G (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    776681 8bsu:G (2.9) BS05 KAI ? GO:0015276 ... P42264 38145505
    776682 8bsu:H (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    776683 8bsu:H (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    776684 8bsu:H (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    776685 8bsu:H (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    776686 8bsu:H (2.9) BS05 KAI ? GO:0015276 ... P42264 38145505
    776687 8bsv:A (1.53) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    776688 8bsv:A (1.53) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    776689 8bsw:A (1.58) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    776690 8bsw:A (1.58) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    776691 8bsx:A (1.38) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    776692 8bsx:A (1.38) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    776693 8bsy:A (1.4) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    776694 8bsy:A (1.4) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    776695 8bsz:A (1.7) BS01 RGU 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776696 8bt0:A (1.6) BS01 RGO 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776697 8bt2:A (1.7) BS01 RG0 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776698 8bt4:A (1.35) BS01 CA 1.17.4.1 GO:0004748 ... Q6F0T5 37797025
    776699 8bt4:B (1.35) BS01 CA 1.17.4.1 GO:0004748 ... Q6F0T5 37797025
    776700 8bt5:A (1.4) BS01 REH 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776701 8bt7:A (1.4) BS01 RL6 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776702 8bt8:A (1.28) BS01 RRI 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776703 8bt9:A (2.1) BS01 NCA ? N/A P35829 38838019
    776704 8bt9:C (2.1) BS01 NCA ? N/A P35829 38838019
    776705 8bta:A (1.34) BS01 RC6 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776706 8btc:A (1.54) BS01 RIQ 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776707 8btd:LA (4.9) BS01 rna ? GO:0002181 ... E2RTN4 36912103
    776708 8btd:LA (4.9) BS02 rna ? GO:0002181 ... E2RTN4 36912103
    776709 8btd:LB (4.9) BS01 rna ? GO:0003723 ... A8BRZ3 36912103
    776710 8btd:LC (4.9) BS01 rna ? GO:0003723 ... A8B7H8 36912103
    776711 8btd:LC (4.9) BS02 rna ? GO:0003723 ... A8B7H8 36912103
    776712 8btd:LF (4.9) BS01 rna ? GO:0000027 ... E2RU47 36912103
    776713 8btd:LF (4.9) BS02 rna ? GO:0000027 ... E2RU47 36912103
    776714 8btd:LG (4.9) BS01 rna ? GO:0003735 ... A0A644EZB9 36912103
    776715 8btd:LG (4.9) BS02 rna ? GO:0003735 ... A0A644EZB9 36912103
    776716 8btd:LH (4.9) BS01 rna ? GO:0000463 ... A8BRY6 36912103
    776717 8btd:LH (4.9) BS02 rna ? GO:0000463 ... A8BRY6 36912103
    776718 8btd:LI (4.9) BS01 rna ? GO:0000470 ... A8BLL7 36912103
    776719 8btd:LI (4.9) BS02 rna ? GO:0000470 ... A8BLL7 36912103
    776720 8btd:LJ (4.9) BS01 rna ? GO:0002181 ... A8BNT5 36912103
    776721 8btd:LK (4.9) BS01 rna ? GO:0003735 ... A8BM86 36912103
    776722 8btd:LK (4.9) BS02 rna ? GO:0003735 ... A8BM86 36912103
    776723 8btd:LK (4.9) BS03 rna ? GO:0003735 ... A8BM86 36912103
    776724 8btd:LL (4.9) BS01 rna ? GO:0003723 ... A8BI95 36912103
    776725 8btd:LL (4.9) BS02 rna ? GO:0003723 ... A8BI95 36912103
    776726 8btd:LM (4.9) BS01 rna ? GO:0003735 ... N/A 36912103
    776727 8btd:LM (4.9) BS02 rna ? GO:0003735 ... N/A 36912103
    776728 8btd:LN (4.9) BS01 rna ? GO:0003723 ... A8B4F8 36912103
    776729 8btd:LO (4.9) BS01 rna ? GO:0002181 ... A8B8Z6 36912103
    776730 8btd:LO (4.9) BS02 rna ? GO:0002181 ... A8B8Z6 36912103
    776731 8btd:LP (4.9) BS01 rna ? GO:0003729 ... A8BU75 36912103
    776732 8btd:LQ (4.9) BS01 rna ? GO:0002181 ... A8BE76 36912103
    776733 8btd:LQ (4.9) BS02 rna ? GO:0002181 ... A8BE76 36912103
    776734 8btd:LR (4.9) BS01 rna ? GO:0003723 ... A8B4T7 36912103
    776735 8btd:LS (4.9) BS01 rna ? GO:0003723 ... A8BH61 36912103
    776736 8btd:LT (4.9) BS01 rna ? GO:0002181 ... A0A644FBU1 36912103
    776737 8btd:LT (4.9) BS02 rna ? GO:0002181 ... A0A644FBU1 36912103
    776738 8btd:LU (4.9) BS01 rna ? GO:0003735 ... A8B2Q4 36912103
    776739 8btd:LU (4.9) BS02 rna ? GO:0003735 ... A8B2Q4 36912103
    776740 8btd:LV (4.9) BS01 rna ? GO:0002181 ... A0A644FC41 36912103
    776741 8btd:LW (4.9) BS01 rna ? GO:0003735 ... A8BS37 36912103
    776742 8btd:LW (4.9) BS02 rna ? GO:0003735 ... A8BS37 36912103
    776743 8btd:LX (4.9) BS01 rna ? GO:0003735 ... A8B7P2 36912103
    776744 8btd:LX (4.9) BS02 rna ? GO:0003735 ... A8B7P2 36912103
    776745 8btd:LY (4.9) BS01 rna ? GO:0003735 ... A8BMP6 36912103
    776746 8btd:LY (4.9) BS02 rna ? GO:0003735 ... A8BMP6 36912103
    776747 8btd:LZ (4.9) BS01 rna ? GO:0002181 ... A8BFT3 36912103
    776748 8btd:LZ (4.9) BS02 rna ? GO:0002181 ... A8BFT3 36912103
    776749 8btd:La (4.9) BS01 rna ? GO:0003735 ... A8B1T3 36912103
    776750 8btd:Lb (4.9) BS01 rna ? GO:0003735 ... A8BZ78 36912103
    776751 8btd:Lc (4.9) BS01 rna ? GO:0002181 ... A8BYY2 36912103
    776752 8btd:Ld (4.9) BS01 rna ? GO:0003723 ... A8B5N7 36912103
    776753 8btd:Le (4.9) BS01 rna ? GO:0002181 ... A8BMP3 36912103
    776754 8btd:Lf (4.9) BS01 rna ? GO:0003735 ... A8BMD9 36912103
    776755 8btd:Lg (4.9) BS01 rna ? GO:0002181 ... A8BKK5 36912103
    776756 8btd:Lh (4.9) BS01 rna ? GO:0003735 ... A8BMF7 36912103
    776757 8btd:Li (4.9) BS01 rna ? GO:0000463 ... A0A644FBK5 36912103
    776758 8btd:Li (4.9) BS02 rna ? GO:0000463 ... A0A644FBK5 36912103
    776759 8btd:Lj (4.9) BS01 rna ? GO:0002181 ... A8BYA6 36912103
    776760 8btd:Lk (4.9) BS01 rna ? GO:0003723 ... A8BLV7 36912103
    776761 8btd:Lk (4.9) BS02 rna ? GO:0003723 ... A8BLV7 36912103
    776762 8btd:Ll (4.9) BS01 rna ? GO:0003735 ... A8B481 36912103
    776763 8btd:Ln (4.9) BS01 rna ? GO:0003723 ... A0A644FB74 36912103
    776764 8btd:Lp (4.9) BS01 rna ? GO:0003735 ... A8BQU8 36912103
    776765 8btd:Lp (4.9) BS02 rna ? GO:0003735 ... A8BQU8 36912103
    776766 8btd:Lq (4.9) BS01 rna ? GO:0003735 ... A8BN26 36912103
    776767 8btd:Ls (4.9) BS01 rna ? GO:0003735 ... A8BXE1 36912103
    776768 8btd:SA (4.9) BS01 rna ? GO:0000028 ... A8BE86 36912103
    776769 8btd:SB (4.9) BS01 rna ? GO:0003723 ... A8BMZ1 36912103
    776770 8btd:SC (4.9) BS01 rna ? GO:0003723 ... A8B8Z2 36912103
    776771 8btd:SD (4.9) BS01 rna ? GO:0003735 ... A8BS79 36912103
    776772 8btd:SE (4.9) BS01 rna ? GO:0003723 ... A8BFE3 36912103
    776773 8btd:SF (4.9) BS01 rna ? GO:0000028 ... A8BZD3 36912103
    776774 8btd:SG (4.9) BS01 rna ? GO:0003735 ... A8B6L8 36912103
    776775 8btd:SH (4.9) BS01 rna ? GO:0003735 ... A8BT38 36912103
    776776 8btd:SI (4.9) BS01 rna ? GO:0000462 ... A8B252 36912103
    776777 8btd:SJ (4.9) BS01 rna ? GO:0003735 ... E2RU77 36912103
    776778 8btd:SK (4.9) BS01 rna ? GO:0003723 ... A8BKS8 36912103
    776779 8btd:SL (4.9) BS01 rna ? GO:0003723 ... A8BRX3 36912103
    776780 8btd:SM (4.9) BS01 rna ? GO:0003735 ... A8BVU0 36912103
    776781 8btd:SO (4.9) BS01 rna N/A GO:0003735 ... A8BS96 36912103
    776782 8btd:SP (4.9) BS01 rna ? GO:0003735 ... A8BE02 36912103
    776783 8btd:SP (4.9) BS02 rna ? GO:0003735 ... A8BE02 36912103
    776784 8btd:SQ (4.9) BS01 rna ? GO:0000028 ... E2RU83 36912103
    776785 8btd:SR (4.9) BS01 rna ? GO:0000028 ... A8BBP3 36912103
    776786 8btd:ST (4.9) BS01 rna ? GO:0000462 ... A8BKC6 36912103
    776787 8btd:SU (4.9) BS01 rna ? GO:0003735 ... A8BRG5 36912103
    776788 8btd:SV (4.9) BS01 rna ? GO:0003676 ... A8BZ58 36912103
    776789 8btd:SW (4.9) BS01 rna ? GO:0000028 ... A0A644F964 36912103
    776790 8btd:SX (4.9) BS01 rna ? GO:0003735 ... A8B4G0 36912103
    776791 8btd:Sb (4.9) BS01 rna ? GO:0003735 ... A8B593 36912103
    776792 8btd:Sc (4.9) BS01 rna ? GO:0003735 ... A8B8H7 36912103
    776793 8btd:Sd (4.9) BS01 rna ? GO:0003729 ... A8BQZ7 36912103
    776794 8btd:Se (4.9) BS01 rna ? GO:0000028 ... A0A644F5K9 36912103
    776795 8btd:Sg (4.9) BS01 rna ? GO:0000028 ... A8B4F3 36912103
    776796 8btd:Sh (4.9) BS01 rna ? GO:0002181 ... A0A644FA19 36912103
    776797 8btd:Sj (4.9) BS01 rna ? GO:0003735 ... A0A644F843 36912103
    776798 8bte:A (1.62) BS01 RIX 3.1.1.98 GO:0016787 ... Q6P988 36934521
    776799 8btg:A (3.2) BS01 dna ? GO:0003677 ... P05648 38097584
    776800 8btg:A (3.2) BS02 dna ? GO:0003677 ... P05648 38097584

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).