SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    777401 8bet:C (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777402 8bet:C (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777403 8bet:C (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777404 8bet:C (2.38) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777405 8bet:D (2.38) BS01 GLC 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777406 8bet:D (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777407 8bet:D (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777408 8bet:D (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777409 8beu:A (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777410 8beu:A (2.27) BS02 GLC 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777411 8beu:A (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777412 8beu:A (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777413 8beu:A (2.27) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777414 8beu:B (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777415 8beu:B (2.27) BS02 GLC 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777416 8beu:B (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777417 8beu:B (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777418 8beu:C (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777419 8beu:C (2.27) BS02 GLC 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777420 8beu:C (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777421 8beu:C (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777422 8beu:D (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777423 8beu:D (2.27) BS02 GLC 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777424 8beu:D (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    777425 8bew:A (3.49) BS01 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777426 8bew:A (3.49) BS02 FES 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777427 8bew:A (3.49) BS03 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777428 8bew:A (3.49) BS04 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777429 8bew:A (3.49) BS05 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777430 8bew:B (3.49) BS01 FMN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777431 8bew:B (3.49) BS02 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777432 8bew:B (3.49) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777433 8bew:B (3.49) BS04 FES 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777434 8bew:B (3.49) BS05 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777435 8bew:B (3.49) BS06 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777436 8bew:C (3.49) BS01 FES 1.12.1.3 GO:0016491 ... A0A097ATI0 36811855
    777437 8bew:D (3.49) BS01 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777438 8bew:D (3.49) BS02 FES 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777439 8bew:D (3.49) BS03 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777440 8bew:D (3.49) BS04 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777441 8bew:D (3.49) BS05 SF4 1.12.1.3 GO:0005506 ... A0A097ATG3 36811855
    777442 8bew:E (3.49) BS01 FMN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777443 8bew:E (3.49) BS02 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777444 8bew:E (3.49) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777445 8bew:E (3.49) BS04 FES 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777446 8bew:E (3.49) BS05 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777447 8bew:E (3.49) BS06 SF4 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    777448 8bew:F (3.49) BS01 FES 1.12.1.3 GO:0016491 ... A0A097ATI0 36811855
    777449 8bf1:A (1.36) BS01 peptide ? GO:0003677 ... P37231 36841188
    777450 8bf2:A (2.18) BS01 QGL ? GO:0003677 ... P37231 36841188
    777451 8bf2:A (2.18) BS02 QGL ? GO:0003677 ... P37231 36841188
    777452 8bf2:B (2.18) BS01 QGL ? GO:0003677 ... P37231 36841188
    777453 8bf3:A (1.19) BS01 XYP 3.1.1.73 GO:0004553 ... A0ACD6BB00 N/A
    777454 8bf3:B (1.19) BS01 XYP 3.1.1.73 GO:0004553 ... A0ACD6BB00 N/A
    777455 8bf5:A (2.96) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 36596301
    777456 8bf5:B (2.96) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    777457 8bf5:B (2.96) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    777458 8bf5:B (2.96) BS03 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    777459 8bf5:B (2.96) BS04 G2P 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    777460 8bf5:B (2.96) BS05 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    777461 8bf5:C (2.96) BS01 rna ? GO:0001172 ... Q5V8X3 36596301
    777462 8bf5:C (2.96) BS02 rna ? GO:0001172 ... Q5V8X3 36596301
    777463 8bf5:C (2.96) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    777464 8bf6:A (1.969) BS01 FE N/A GO:0006826 ... N/A 37428843
    777465 8bf6:A (1.969) BS02 95B N/A GO:0006826 ... N/A 37428843
    777466 8bf7:A (2.33) BS01 rna ? GO:0000027 ... P60422 37553384
    777467 8bf7:B (2.33) BS01 rna ? GO:0000027 ... P60438 37553384
    777468 8bf7:C (2.33) BS01 rna ? GO:0001070 ... P60723 37553384
    777469 8bf7:D (2.33) BS01 rna ? GO:0000027 ... P62399 37553384
    777470 8bf7:D (2.33) BS02 rna ? GO:0000027 ... P62399 37553384
    777471 8bf7:D (2.33) BS03 rna ? GO:0000027 ... P62399 37553384
    777472 8bf7:E (2.33) BS01 rna ? GO:0000027 ... P0AG55 37553384
    777473 8bf7:F (2.33) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    777474 8bf7:G (2.33) BS01 rna ? GO:0002181 ... P0AA10 37553384
    777475 8bf7:H (2.33) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    777476 8bf7:H (2.33) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    777477 8bf7:I (2.33) BS01 rna ? GO:0002181 ... P02413 37553384
    777478 8bf7:J (2.33) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    777479 8bf7:J (2.33) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    777480 8bf7:K (2.33) BS01 rna ? GO:0000027 ... P0AG44 37553384
    777481 8bf7:L (2.33) BS01 rna ? GO:0002181 ... P0C018 37553384
    777482 8bf7:L (2.33) BS02 rna ? GO:0002181 ... P0C018 37553384
    777483 8bf7:M (2.33) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    777484 8bf7:M (2.33) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    777485 8bf7:N (2.33) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    777486 8bf7:O (2.33) BS01 rna ? GO:0002181 ... P0AG48 37553384
    777487 8bf7:P (2.33) BS01 rna ? GO:0002181 ... P61175 37553384
    777488 8bf7:Q (2.33) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    777489 8bf7:R (2.33) BS01 rna ? GO:0000027 ... P60624 37553384
    777490 8bf7:S (2.33) BS01 rna ? GO:0000027 ... P68919 37553384
    777491 8bf7:T (2.33) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    777492 8bf7:T (2.33) BS02 rna ? GO:0000027 ... P0A7L8 37553384
    777493 8bf7:U (2.33) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    777494 8bf7:V (2.33) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    777495 8bf7:W (2.33) BS01 rna ? GO:0000027 ... P0AG51 37553384
    777496 8bf7:X (2.33) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    777497 8bf7:a (2.33) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    777498 8bf7:b (2.33) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    777499 8bf7:c (2.33) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    777500 8bf7:d (2.33) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    777501 8bf7:e (2.33) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    777502 8bf7:f (2.33) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    777503 8bf7:g (2.33) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    777504 8bf7:h (2.33) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    777505 8bf7:i (2.33) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    777506 8bf7:j (2.33) BS01 rna ? GO:0002181 ... P02358 37553384
    777507 8bf7:k (2.33) BS01 rna ? GO:0000028 ... P02359 37553384
    777508 8bf7:k (2.33) BS02 rna ? GO:0000028 ... P02359 37553384
    777509 8bf7:l (2.33) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    777510 8bf7:m (2.33) BS01 rna ? GO:0002181 ... P0A7X3 37553384
    777511 8bf7:m (2.33) BS02 rna ? GO:0002181 ... P0A7X3 37553384
    777512 8bf7:n (2.33) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    777513 8bf7:o (2.33) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    777514 8bf7:p (2.33) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    777515 8bf7:q (2.33) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    777516 8bf7:r (2.33) BS01 rna ? GO:0000028 ... P0AG59 37553384
    777517 8bf7:s (2.33) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    777518 8bf7:s (2.33) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    777519 8bf7:t (2.33) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    777520 8bf7:u (2.33) BS01 rna ? GO:0000028 ... P0AG63 37553384
    777521 8bf7:v (2.33) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    777522 8bf7:w (2.33) BS01 rna ? GO:0002181 ... P0A7U3 37553384
    777523 8bf7:x (2.33) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    777524 8bf7:y (2.33) BS01 rna ? GO:0000028 ... P68679 37553384
    777525 8bf8:A (2.8) BS01 rna 3.1.21.- N/A Q7DF80 37020015
    777526 8bf9:C (2.69) BS01 rna ? GO:0005789 ... A0A6P3YN15 37983950
    777527 8bf9:C (2.69) BS02 peptide ? GO:0005789 ... A0A6P3YN15 37983950
    777528 8bf9:G (2.69) BS01 rna ? GO:0006614 ... N/A 37983950
    777529 8bf9:P (2.69) BS01 rna ? GO:0002181 ... K4P217 37983950
    777530 8bf9:R (2.69) BS01 rna ? GO:0003723 ... N/A 37983950
    777531 8bf9:U (2.69) BS01 rna ? GO:0002181 ... A0A6P7EJM7 37983950
    777532 8bf9:X (2.69) BS01 rna ? GO:0003735 ... D4P8H6 37983950
    777533 8bf9:X (2.69) BS02 rna ? GO:0003735 ... D4P8H6 37983950
    777534 8bf9:Y (2.69) BS01 rna ? GO:0003723 ... A0A6P3ED73 37983950
    777535 8bf9:Y (2.69) BS02 rna ? GO:0003723 ... A0A6P3ED73 37983950
    777536 8bf9:d (2.69) BS01 rna ? GO:0003735 ... N/A 37983950
    777537 8bf9:h (2.69) BS01 rna ? GO:0000463 ... A0A6P3TAC5 37983950
    777538 8bf9:h (2.69) BS02 rna ? GO:0000463 ... A0A6P3TAC5 37983950
    777539 8bf9:j (2.69) BS01 rna ? GO:0003735 ... N/A 37983950
    777540 8bf9:j (2.69) BS02 rna ? GO:0003735 ... N/A 37983950
    777541 8bf9:k (2.69) BS01 rna ? GO:0003735 ... A0A836CRM6 37983950
    777542 8bf9:l (2.69) BS01 rna ? GO:0003735 ... A0A6P3TG10 37983950
    777543 8bf9:l (2.69) BS02 rna ? GO:0003735 ... A0A6P3TG10 37983950
    777544 8bfc:A (1.4) BS01 peptide ? GO:0001836 ... P31947 36926879
    777545 8bfc:A (1.4) BS02 MG ? GO:0001836 ... P31947 36926879
    777546 8bfc:A (1.4) BS03 MG ? GO:0001836 ... P31947 36926879
    777547 8bfe:B (2.1) BS01 peptide N/A N/A N/A 35732733
    777548 8bfe:N (2.1) BS01 peptide N/A N/A N/A 35732733
    777549 8bff:A (2.6) BS01 QG6 ? GO:0003677 ... P37231 36841188
    777550 8bfm:A (1.7) BS01 QI6 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    777551 8bfm:A (1.7) BS02 QI6 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    777552 8bfn:A (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    777553 8bfn:A (3.52) BS02 ADP ? N/A A0A6D0I2P0 36525956
    777554 8bfn:B (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    777555 8bfn:F (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    777556 8bfn:F (3.52) BS02 ADP ? N/A A0A6D0I2P0 36525956
    777557 8bfn:G (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    777558 8bfs:A (1.95) BS01 QNR 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    777559 8bft:A (1.19) BS01 peptide ? GO:0000162 ... P30177 36864742
    777560 8bfw:A (2.33) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777561 8bfw:C (2.33) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777562 8bfy:A (1.55) BS01 BGC ? N/A C9Z451 37791952
    777563 8bfy:A (1.55) BS02 BGC ? N/A C9Z451 37791952
    777564 8bfy:A (1.55) BS03 BGC ? N/A C9Z451 37791952
    777565 8bga:A (1.982) BS01 QQL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    777566 8bga:B (1.982) BS01 QQL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    777567 8bgb:AAA (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777568 8bgb:BBB (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777569 8bgb:CCC (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777570 8bgb:DDD (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777571 8bgb:EEE (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777572 8bgb:FFF (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777573 8bgb:GGG (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777574 8bgb:HHH (1.7) BS01 FLC 2.7.13.3 N/A A4IPE6 39843904
    777575 8bgc:A (2.8) BS01 QIA 2.7.11.1 GO:0004672 ... P68400 37077385
    777576 8bgc:B (2.8) BS01 QIA 2.7.11.1 GO:0004672 ... P68400 37077385
    777577 8bgd:A (1.621) BS01 QH0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    777578 8bge:A (2.11) BS01 rna ? GO:0000027 ... P60422 37553384
    777579 8bge:B (2.11) BS01 rna ? GO:0000027 ... P60438 37553384
    777580 8bge:C (2.11) BS01 rna ? GO:0001070 ... P60723 37553384
    777581 8bge:D (2.11) BS01 rna ? GO:0000027 ... P62399 37553384
    777582 8bge:D (2.11) BS02 rna ? GO:0000027 ... P62399 37553384
    777583 8bge:D (2.11) BS03 rna ? GO:0000027 ... P62399 37553384
    777584 8bge:E (2.11) BS01 rna ? GO:0000027 ... P0AG55 37553384
    777585 8bge:F (2.11) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    777586 8bge:G (2.11) BS01 rna ? GO:0002181 ... P0AA10 37553384
    777587 8bge:H (2.11) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    777588 8bge:I (2.11) BS01 rna ? GO:0002181 ... P02413 37553384
    777589 8bge:J (2.11) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    777590 8bge:J (2.11) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    777591 8bge:K (2.11) BS01 rna ? GO:0000027 ... P0AG44 37553384
    777592 8bge:L (2.11) BS01 rna ? GO:0002181 ... P0C018 37553384
    777593 8bge:L (2.11) BS02 rna ? GO:0002181 ... P0C018 37553384
    777594 8bge:M (2.11) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    777595 8bge:M (2.11) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    777596 8bge:N (2.11) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    777597 8bge:O (2.11) BS01 rna ? GO:0002181 ... P0AG48 37553384
    777598 8bge:P (2.11) BS01 rna ? GO:0002181 ... P61175 37553384
    777599 8bge:Q (2.11) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    777600 8bge:R (2.11) BS01 rna ? GO:0000027 ... P60624 37553384

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).