SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    777601 8bws:A (3.2) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    777602 8bws:A (3.2) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    777603 8bws:B (3.2) BS01 dna 2.7.7.6 GO:0000428 ... P22276 36977686
    777604 8bws:B (3.2) BS02 dna 2.7.7.6 GO:0000428 ... P22276 36977686
    777605 8bws:B (3.2) BS03 rna 2.7.7.6 GO:0000428 ... P22276 36977686
    777606 8bws:B (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... P22276 36977686
    777607 8bws:C (3.2) BS01 4QM ? GO:0000428 ... P07703 36977686
    777608 8bws:E (3.2) BS01 dna ? GO:0000428 ... P20434 36977686
    777609 8bws:I (3.2) BS01 4QM ? GO:0000428 ... Q04307 36977686
    777610 8bws:I (3.2) BS02 ZN ? GO:0000428 ... Q04307 36977686
    777611 8bws:J (3.2) BS01 ZN ? GO:0000428 ... P22139 36977686
    777612 8bws:L (3.2) BS01 ZN ? GO:0000428 ... P40422 36977686
    777613 8bws:O (3.2) BS01 dna ? GO:0000428 ... P32349 36977686
    777614 8bwu:A (2.36) BS01 6NR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    N/A
    777615 8bwu:A (2.36) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    N/A
    777616 8bwv:A (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777617 8bwv:A (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777618 8bwv:B (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777619 8bwv:B (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777620 8bwv:C (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777621 8bwv:C (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777622 8bwv:D (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777623 8bwv:D (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777624 8bwv:E (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777625 8bwv:E (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777626 8bwv:F (2.2) BS01 CU ? N/A A0A482M8M0 N/A
    777627 8bwv:F (2.2) BS02 CU ? N/A A0A482M8M0 N/A
    777628 8bwx:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777629 8bwx:A (1.6) BS02 RZT ? GO:0000122 ... P31947 37455289
    777630 8bwy:C (38.0) BS01 ADP ? GO:0005524 ... Q22A67 37051721
    777631 8bwy:C (38.0) BS02 ADP ? GO:0005524 ... Q22A67 37051721
    777632 8bwy:C (38.0) BS03 ADP ? GO:0005524 ... Q22A67 37051721
    777633 8bwy:C (38.0) BS04 ATP ? GO:0005524 ... Q22A67 37051721
    777634 8bwz:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777635 8bwz:A (1.6) BS02 S3I ? GO:0000122 ... P31947 37455289
    777636 8bx0:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777637 8bx0:A (1.6) BS02 S2U ? GO:0000122 ... P31947 37455289
    777638 8bx1:A (2.5) BS01 dna ? GO:0000981 ... P20263 N/A
    777639 8bx1:A (2.5) BS02 dna ? GO:0000981 ... P20263 N/A
    777640 8bx1:E (2.5) BS01 dna ? N/A P48432 N/A
    777641 8bx1:E (2.5) BS02 dna ? N/A P48432 N/A
    777642 8bx2:A (3.14) BS01 dna ? GO:0000981 ... P20263 N/A
    777643 8bx2:A (3.14) BS02 dna ? GO:0000981 ... P20263 N/A
    777644 8bx2:E (3.14) BS01 dna ? N/A P48432 N/A
    777645 8bx2:E (3.14) BS02 dna ? N/A P48432 N/A
    777646 8bx3:A (1.2) BS01 peptide ? GO:0000122 ... P31947 37455289
    777647 8bx3:A (1.2) BS02 RZL ? GO:0000122 ... P31947 37455289
    777648 8bx4:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777649 8bx4:A (1.6) BS02 RZC ? GO:0000122 ... P31947 37455289
    777650 8bx6:A (1.5) BS01 S5I 2.7.10.2 GO:0004672 ... O60674 38843875
    777651 8bx8:A (30.3) BS01 ADP ? GO:0005524 ... Q22A67 37051721
    777652 8bx8:A (30.3) BS02 ATP ? GO:0005524 ... Q22A67 37051721
    777653 8bx8:A (30.3) BS03 ADP ? GO:0005524 ... Q22A67 37051721
    777654 8bx8:A (30.3) BS04 MG ? GO:0005524 ... Q22A67 37051721
    777655 8bx8:B (30.3) BS01 ATP ? GO:0005524 ... I7M9J2 37051721
    777656 8bx8:B (30.3) BS02 ADP ? GO:0005524 ... I7M9J2 37051721
    777657 8bx8:B (30.3) BS03 ADP ? GO:0005524 ... I7M9J2 37051721
    777658 8bx8:C (30.3) BS01 ATP ? GO:0005524 ... I7M6H4 37051721
    777659 8bx8:C (30.3) BS02 ADP ? GO:0005524 ... I7M6H4 37051721
    777660 8bx8:C (30.3) BS03 ADP ? GO:0005524 ... I7M6H4 37051721
    777661 8bx9:A (1.4) BS01 S59 2.7.10.2 GO:0004672 ... O60674 38843875
    777662 8bx9:B (1.4) BS01 S59 2.7.10.2 GO:0004672 ... O60674 38843875
    777663 8bxc:A (1.9) BS01 S4R 2.7.10.2 GO:0004672 ... O60674 38843875
    777664 8bxc:B (1.9) BS01 S4R 2.7.10.2 GO:0004672 ... O60674 38843875
    777665 8bxg:A (3.16) BS01 K ? GO:0000166 ... P03819 38834573
    777666 8bxg:A (3.16) BS02 AMP ? GO:0000166 ... P03819 38834573
    777667 8bxg:A (3.16) BS03 PGW ? GO:0000166 ... P03819 38834573
    777668 8bxg:B (3.16) BS01 K ? GO:0000166 ... P03819 38834573
    777669 8bxg:B (3.16) BS02 AMP ? GO:0000166 ... P03819 38834573
    777670 8bxh:A (1.3) BS01 C87 2.7.10.2 GO:0004672 ... O60674 38843875
    777671 8bxi:A (1.2) BS01 peptide ? GO:0000122 ... P31947 37455289
    777672 8bxi:A (1.2) BS02 MG ? GO:0000122 ... P31947 37455289
    777673 8bxi:A (1.2) BS03 S0O ? GO:0000122 ... P31947 37455289
    777674 8bxk:A (2.31) BS01 SFG 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... K0BRZ6 N/A
    777675 8bxk:B (2.31) BS01 SFG 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... K0BRZ6 N/A
    777676 8bxl:A (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777677 8bxl:B (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777678 8bxl:C (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777679 8bxl:D (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777680 8bxl:E (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777681 8bxl:F (2.4) BS01 FAD 1.1.-.- GO:0016614 ... A0A075TRK9 37366079
    777682 8bxm:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777683 8bxm:A (1.6) BS02 MG ? GO:0000122 ... P31947 37455289
    777684 8bxm:A (1.6) BS03 S0U ? GO:0000122 ... P31947 37455289
    777685 8bxn:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777686 8bxn:A (1.6) BS02 S1R ? GO:0000122 ... P31947 37455289
    777687 8bxo:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777688 8bxo:A (1.6) BS02 S1I ? GO:0000122 ... P31947 37455289
    777689 8bxq:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777690 8bxq:A (1.6) BS02 S3U ? GO:0000122 ... P31947 37455289
    777691 8bxs:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777692 8bxs:A (1.6) BS02 S2E ? GO:0000122 ... P31947 37455289
    777693 8bxv:AAA (1.3) BS01 IPB ? GO:0005549 ... Q8T6R6 36921814
    777694 8bxw:AAA (1.3) BS01 1BO ? GO:0005549 ... Q8T6R6 36921814
    777695 8bxw:AAA (1.3) BS02 S5V ? GO:0005549 ... Q8T6R6 36921814
    777696 8bxw:AAA (1.3) BS03 S5V ? GO:0005549 ... Q8T6R6 36921814
    777697 8bxx:AA (1.97) BS01 NAD 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777698 8bxx:AA (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777699 8bxx:BB (1.97) BS01 NAD 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777700 8bxx:BB (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777701 8bxx:CC (1.97) BS01 NAD 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777702 8bxx:CC (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777703 8bxx:DD (1.97) BS01 NAD 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777704 8bxx:DD (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    777705 8bxy:A (1.45) BS01 MAN ? GO:0007155 ... P08191 36944399
    777706 8bxy:B (1.45) BS01 MAN ? GO:0007155 ... P08191 36944399
    777707 8bxz:A (1.2) BS01 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    777708 8bxz:A (1.2) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    777709 8bxz:A (1.2) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    777710 8bxz:A (1.2) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    777711 8bxz:A (1.2) BS05 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    777712 8by0:A (2.1) BS01 NOF ? GO:0005576 ... P22629 N/A
    777713 8by1:A (1.486) BS01 NOF ? GO:0009374 ... P22629 N/A
    777714 8by2:A (3.18) BS01 K ? GO:0000166 ... P03819 38834573
    777715 8by2:A (3.18) BS02 AMP ? GO:0000166 ... P03819 38834573
    777716 8by2:A (3.18) BS03 GSH ? GO:0000166 ... P03819 38834573
    777717 8by2:A (3.18) BS04 PGW ? GO:0000166 ... P03819 38834573
    777718 8by2:A (3.18) BS05 GSH ? GO:0000166 ... P03819 38834573
    777719 8by2:B (3.18) BS01 GSH ? GO:0000166 ... P03819 38834573
    777720 8by2:B (3.18) BS02 K ? GO:0000166 ... P03819 38834573
    777721 8by2:B (3.18) BS03 AMP ? GO:0000166 ... P03819 38834573
    777722 8by2:B (3.18) BS04 GSH ? GO:0000166 ... P03819 38834573
    777723 8by3:A (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    777724 8by3:B (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    777725 8by3:C (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    777726 8by3:D (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    777727 8by5:A () BS01 peptide ? N/A N/A N/A
    777728 8by6:A (3.19) BS01 peptide ? GO:0000184 ... Q09161 38175753
    777729 8by6:B (3.19) BS01 GTG ? GO:0000184 ... P52298 38175753
    777730 8by9:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777731 8by9:A (1.6) BS02 S86 ? GO:0000122 ... P31947 37455289
    777732 8bya:F (3.38) BS01 peptide ? GO:0000307 ... P61024 37400515
    777733 8byb:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777734 8byb:A (1.6) BS02 S8O ? GO:0000122 ... P31947 37455289
    777735 8byc:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777736 8byc:A (1.6) BS02 S7R ? GO:0000122 ... P31947 37455289
    777737 8byd:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777738 8byd:A (1.6) BS02 S7I ? GO:0000122 ... P31947 37455289
    777739 8bye:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777740 8bye:A (1.6) BS02 RY0 ? GO:0000122 ... P31947 37455289
    777741 8byf:A (1.65) BS01 peptide ? GO:0000122 ... P31947 37455289
    777742 8byf:A (1.65) BS02 S6X ? GO:0000122 ... P31947 37455289
    777743 8byg:A (1.7) BS01 peptide ? GO:0000122 ... P31947 37455289
    777744 8byg:A (1.7) BS02 S6O ? GO:0000122 ... P31947 37455289
    777745 8byh:A (2.19) BS01 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    777746 8byh:A (2.19) BS02 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    777747 8byh:B (2.19) BS01 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    777748 8byh:B (2.19) BS02 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    777749 8byi:A (4.1) BS01 CPS N/A GO:0004888 ... N/A 37395731
    777750 8byi:A (4.1) BS02 CPS N/A GO:0004888 ... N/A 37395731
    777751 8byi:B (4.1) BS01 CPS N/A GO:0004888 ... N/A 37395731
    777752 8byi:B (4.1) BS02 CPS N/A GO:0004888 ... N/A 37395731
    777753 8byi:C (4.1) BS01 CPS N/A GO:0004888 ... N/A 37395731
    777754 8byi:C (4.1) BS02 CPS N/A GO:0004888 ... N/A 37395731
    777755 8byi:D (4.1) BS01 CPS N/A GO:0004888 ... N/A 37395731
    777756 8byi:D (4.1) BS02 CPS N/A GO:0004888 ... N/A 37395731
    777757 8byi:E (4.1) BS01 CPS N/A GO:0004888 ... N/A 37395731
    777758 8byi:E (4.1) BS02 CPS N/A GO:0004888 ... N/A 37395731
    777759 8byj:A (2.07) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777760 8byj:A (2.07) BS02 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777761 8byj:B (2.07) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777762 8byj:B (2.07) BS02 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    777763 8byk:A (1.7) BS01 ZN ? GO:0005886 ... K6THC9 36741885
    777764 8byl:C (3.5) BS01 peptide ? GO:0000307 ... P61024 37400515
    777765 8byo:A (1.2) BS01 peptide ? GO:0000122 ... P31947 37455289
    777766 8byo:A (1.2) BS02 U0L ? GO:0000122 ... P31947 37455289
    777767 8byq:1 (4.1) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 37148879
    777768 8byq:4 (4.1) BS01 ZN ? GO:0000438 ... Q13888 37148879
    777769 8byq:4 (4.1) BS02 ZN ? GO:0000438 ... Q13888 37148879
    777770 8byq:4 (4.1) BS03 ZN ? GO:0000438 ... Q13888 37148879
    777771 8byq:5 (4.1) BS01 ZN ? GO:0000438 ... Q13889 37148879
    777772 8byq:7 (4.1) BS01 ZN ? GO:0000082 ... P51948 37148879
    777773 8byq:7 (4.1) BS02 ZN ? GO:0000082 ... P51948 37148879
    777774 8byq:A (4.1) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    777775 8byq:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    777776 8byq:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    777777 8byq:A (4.1) BS04 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    777778 8byq:B (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37148879
    777779 8byq:C (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 37148879
    777780 8byq:I (4.1) BS01 ZN ? GO:0000428 ... P60899 37148879
    777781 8byq:I (4.1) BS02 ZN ? GO:0000428 ... P60899 37148879
    777782 8byq:J (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 37148879
    777783 8byq:L (4.1) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 37148879
    777784 8byq:M (4.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    777785 8byq:M (4.1) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    777786 8byq:M (4.1) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 37148879
    777787 8byq:O (4.1) BS01 dna ? GO:0000785 ... P20226 37148879
    777788 8byq:O (4.1) BS02 dna ? GO:0000785 ... P20226 37148879
    777789 8byq:R (4.1) BS01 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    777790 8byq:R (4.1) BS02 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    777791 8byq:W (4.1) BS01 ZN ? GO:0006367 ... P29083 37148879
    777792 8byq:a (4.1) BS01 dna ? GO:0000786 ... P84233 37148879
    777793 8byq:a (4.1) BS02 dna ? GO:0000786 ... P84233 37148879
    777794 8byq:b (4.1) BS01 dna ? GO:0000786 ... P62799 37148879
    777795 8byq:b (4.1) BS02 dna ? GO:0000786 ... P62799 37148879
    777796 8byq:c (4.1) BS01 dna ? GO:0000786 ... P06897 37148879
    777797 8byq:c (4.1) BS02 dna ? GO:0000786 ... P06897 37148879
    777798 8byq:d (4.1) BS01 dna ? GO:0000786 ... P02281 37148879
    777799 8byq:d (4.1) BS02 dna ? GO:0000786 ... P02281 37148879
    777800 8byq:e (4.1) BS01 dna ? GO:0000786 ... P84233 37148879

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).