SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 3880 3881 3882 3883 3884 3885 3886 3887 3888 3889 3890 3891 3892 3893 3894 3895 3896 3897 3898 3899 3900 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    777801 8byq:e (4.1) BS02 dna ? GO:0000786 ... P84233 37148879
    777802 8byq:f (4.1) BS01 dna ? GO:0000786 ... P62799 37148879
    777803 8byq:f (4.1) BS02 dna ? GO:0000786 ... P62799 37148879
    777804 8byq:g (4.1) BS01 dna ? GO:0000786 ... P06897 37148879
    777805 8byq:g (4.1) BS02 dna ? GO:0000786 ... P06897 37148879
    777806 8byq:h (4.1) BS01 dna ? GO:0000786 ... P02281 37148879
    777807 8byq:h (4.1) BS02 dna ? GO:0000786 ... P02281 37148879
    777808 8byv:A (2.89) BS01 rna ? GO:0005737 ... Q2G2Q4 36768442
    777809 8byv:b (2.89) BS01 rna ? GO:0003735 ... Q2FZ25 36768442
    777810 8byv:c (2.89) BS01 rna ? GO:0003676 ... Q2FW12 36768442
    777811 8byv:d (2.89) BS01 rna ? GO:0003723 ... Q2FXK6 36768442
    777812 8byv:e (2.89) BS01 rna ? GO:0003723 ... Q2FW23 36768442
    777813 8byv:f (2.89) BS01 rna ? GO:0003735 ... Q2G113 36768442
    777814 8byv:g (2.89) BS01 rna ? GO:0000028 ... P48940 36768442
    777815 8byv:h (2.89) BS01 rna ? GO:0003735 ... Q2FW20 36768442
    777816 8byv:i (2.89) BS01 rna ? GO:0003723 ... Q2FW39 36768442
    777817 8byv:j (2.89) BS01 rna ? GO:0000049 ... Q931G5 36768442
    777818 8byv:k (2.89) BS01 rna ? GO:0003735 ... Q2FW31 36768442
    777819 8byv:l (2.89) BS01 rna ? GO:0000049 ... P0A0H0 36768442
    777820 8byv:m (2.89) BS01 rna ? GO:0000049 ... Q2FW30 36768442
    777821 8byv:n (2.89) BS01 rna ? GO:0003735 ... Q2FW19 36768442
    777822 8byv:o (2.89) BS01 rna ? GO:0003735 ... Q2G2Q1 36768442
    777823 8byv:p (2.89) BS01 rna ? GO:0003735 ... Q2FZ45 36768442
    777824 8byv:q (2.89) BS01 rna ? GO:0003735 ... Q2FW15 36768442
    777825 8byv:r (2.89) BS01 rna ? GO:0003735 ... Q2G111 36768442
    777826 8byv:s (2.89) BS01 rna ? GO:0000028 ... Q2FW10 36768442
    777827 8byv:t (2.89) BS01 rna ? GO:0003723 ... Q2FXY6 36768442
    777828 8byx:A (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777829 8byx:A (3.0) BS02 dna ? GO:0000981 ... Q92826 N/A
    777830 8byx:B (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777831 8byx:B (3.0) BS02 dna ? GO:0000981 ... Q92826 N/A
    777832 8byx:G (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777833 8byx:G (3.0) BS02 dna ? GO:0000981 ... Q92826 N/A
    777834 8byx:J (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777835 8byx:J (3.0) BS02 dna ? GO:0000981 ... Q92826 N/A
    777836 8byx:K (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777837 8byx:K (3.0) BS02 dna ? GO:0000981 ... Q92826 N/A
    777838 8byx:L (3.0) BS01 dna ? GO:0000981 ... Q92826 N/A
    777839 8byy:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37455289
    777840 8byy:A (1.6) BS02 SE3 ? GO:0000122 ... P31947 37455289
    777841 8byz:A (1.4) BS01 peptide ? GO:0000122 ... P31947 37455289
    777842 8byz:A (1.4) BS02 SD7 ? GO:0000122 ... P31947 37455289
    777843 8bz0:A (1.2) BS01 peptide ? GO:0000122 ... P31947 37455289
    777844 8bz0:A (1.2) BS02 SDM ? GO:0000122 ... P31947 37455289
    777845 8bz1:A (3.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37148879
    777846 8bz1:A (3.8) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37148879
    777847 8bz1:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37148879
    777848 8bz1:A (3.8) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37148879
    777849 8bz1:B (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37148879
    777850 8bz1:C (3.8) BS01 ZN ? GO:0000428 ... I3LCH3 37148879
    777851 8bz1:I (3.8) BS01 ZN ? GO:0000428 ... P60899 37148879
    777852 8bz1:I (3.8) BS02 ZN ? GO:0000428 ... P60899 37148879
    777853 8bz1:J (3.8) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 37148879
    777854 8bz1:L (3.8) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 37148879
    777855 8bz1:M (3.8) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    777856 8bz1:M (3.8) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    777857 8bz1:M (3.8) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 37148879
    777858 8bz1:O (3.8) BS01 dna ? GO:0000785 ... P20226 37148879
    777859 8bz1:O (3.8) BS02 dna ? GO:0000785 ... P20226 37148879
    777860 8bz1:R (3.8) BS01 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    777861 8bz1:R (3.8) BS02 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    777862 8bz1:a (3.8) BS01 dna ? GO:0000786 ... P84233 37148879
    777863 8bz1:a (3.8) BS02 dna ? GO:0000786 ... P84233 37148879
    777864 8bz1:b (3.8) BS01 dna ? GO:0000786 ... P62799 37148879
    777865 8bz1:b (3.8) BS02 dna ? GO:0000786 ... P62799 37148879
    777866 8bz1:c (3.8) BS01 dna ? GO:0000786 ... P06897 37148879
    777867 8bz1:c (3.8) BS02 dna ? GO:0000786 ... P06897 37148879
    777868 8bz1:d (3.8) BS01 dna ? GO:0000786 ... P02281 37148879
    777869 8bz1:d (3.8) BS02 dna ? GO:0000786 ... P02281 37148879
    777870 8bz1:e (3.8) BS01 dna ? GO:0000786 ... P84233 37148879
    777871 8bz1:e (3.8) BS02 dna ? GO:0000786 ... P84233 37148879
    777872 8bz1:f (3.8) BS01 dna ? GO:0000786 ... P62799 37148879
    777873 8bz1:f (3.8) BS02 dna ? GO:0000786 ... P62799 37148879
    777874 8bz1:g (3.8) BS01 dna ? GO:0000786 ... P06897 37148879
    777875 8bz1:g (3.8) BS02 dna ? GO:0000786 ... P06897 37148879
    777876 8bz1:h (3.8) BS01 dna ? GO:0000786 ... P02281 37148879
    777877 8bz1:h (3.8) BS02 dna ? GO:0000786 ... P02281 37148879
    777878 8bz3:A (1.31) BS01 SQR ? GO:0030246 ... P17931 36835132
    777879 8bz6:A (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777880 8bz6:B (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777881 8bz6:C (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777882 8bz6:D (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777883 8bz6:E (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777884 8bz6:F (2.4) BS01 UPG ? GO:0016757 ... A0A401AAP7 39746981
    777885 8bz7:A (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777886 8bz7:A (2.2) BS02 MG ? GO:0016757 ... A0A401AAP7 39746981
    777887 8bz7:B (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777888 8bz7:B (2.2) BS02 MG ? GO:0016757 ... A0A401AAP7 39746981
    777889 8bz7:C (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777890 8bz7:D (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777891 8bz7:D (2.2) BS02 MG ? GO:0016757 ... A0A401AAP7 39746981
    777892 8bz7:E (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777893 8bz7:E (2.2) BS02 MG ? GO:0016757 ... A0A401AAP7 39746981
    777894 8bz7:F (2.2) BS01 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777895 8bz8:A (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777896 8bz8:A (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777897 8bz8:B (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777898 8bz8:B (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777899 8bz8:C (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777900 8bz8:C (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777901 8bz8:D (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777902 8bz8:D (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777903 8bz8:E (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777904 8bz8:E (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777905 8bz8:F (2.52) BS01 MG ? GO:0016757 ... A0A401AAP7 39746981
    777906 8bz8:F (2.52) BS02 TRH ? GO:0016757 ... A0A401AAP7 39746981
    777907 8bz9:A (1.3) BS01 peptide ? GO:0000122 ... P31947 37455289
    777908 8bz9:A (1.3) BS02 LF5 ? GO:0000122 ... P31947 37455289
    777909 8bz9:A (1.3) BS03 LF5 ? GO:0000122 ... P31947 37455289
    777910 8bza:A (1.25) BS01 peptide ? GO:0000122 ... P31947 37455289
    777911 8bza:A (1.25) BS02 L1T ? GO:0000122 ... P31947 37455289
    777912 8bzb:A (1.7) BS01 peptide ? GO:0000122 ... P31947 37455289
    777913 8bzb:A (1.7) BS02 GEH ? GO:0000122 ... P31947 37455289
    777914 8bzb:A (1.7) BS03 SH9 ? GO:0000122 ... P31947 37455289
    777915 8bzc:A (1.1) BS01 peptide ? GO:0000122 ... P31947 N/A
    777916 8bzc:A (1.1) BS02 GEH ? GO:0000122 ... P31947 N/A
    777917 8bzc:A (1.1) BS03 SG0 ? GO:0000122 ... P31947 N/A
    777918 8bzd:A (1.5) BS01 peptide N/A GO:0000122 ... P31947 N/A
    777919 8bzd:A (1.5) BS02 SIT N/A GO:0000122 ... P31947 N/A
    777920 8bze:A (1.43) BS01 peptide N/A GO:0000122 ... P31947 N/A
    777921 8bze:A (1.43) BS02 SIY N/A GO:0000122 ... P31947 N/A
    777922 8bzf:A (1.53) BS01 peptide ? GO:0000122 ... P31947 N/A
    777923 8bzf:A (1.53) BS02 SJ4 ? GO:0000122 ... P31947 N/A
    777924 8bzg:A (1.49) BS01 peptide N/A GO:0000122 ... P31947 N/A
    777925 8bzg:A (1.49) BS02 SJC N/A GO:0000122 ... P31947 N/A
    777926 8bzh:A (1.46) BS01 peptide N/A GO:0000122 ... P31947 N/A
    777927 8bzh:A (1.46) BS02 EZ5 N/A GO:0000122 ... P31947 N/A
    777928 8bzi:A (1.72) BS01 SJL 2.7.11.1 GO:0004672 ... Q9Y6E0 37094449
    777929 8bzj:A (2.52) BS01 SJX 2.7.11.1 GO:0004672 ... Q9Y6E0 38422480
    777930 8bzj:B (2.52) BS01 SJX 2.7.11.1 GO:0004672 ... Q9Y6E0 38422480
    777931 8bzl:3 (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P49720 N/A
    777932 8bzl:A (2.14) BS01 peptide ? GO:0000502 ... P25787 N/A
    777933 8bzl:B (2.14) BS01 peptide ? GO:0000502 ... P25789 N/A
    777934 8bzl:B (2.14) BS02 peptide ? GO:0000502 ... P25789 N/A
    777935 8bzl:C (2.14) BS01 peptide ? GO:0000502 ... O14818 N/A
    777936 8bzl:D (2.14) BS01 peptide ? GO:0000502 ... P28066 N/A
    777937 8bzl:E (2.14) BS01 peptide ? GO:0000502 ... P25786 N/A
    777938 8bzl:H (2.14) BS01 MG 3.4.25.1 GO:0000502 ... Q99436 N/A
    777939 8bzl:I (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P49720 N/A
    777940 8bzl:K (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P28074 N/A
    777941 8bzl:O (2.14) BS01 peptide ? GO:0000502 ... P25787 N/A
    777942 8bzl:P (2.14) BS01 peptide ? GO:0000502 ... P25789 N/A
    777943 8bzl:P (2.14) BS02 peptide ? GO:0000502 ... P25789 N/A
    777944 8bzl:Q (2.14) BS01 peptide ? GO:0000502 ... O14818 N/A
    777945 8bzl:R (2.14) BS01 peptide ? GO:0000502 ... P28066 N/A
    777946 8bzl:S (2.14) BS01 peptide ? GO:0000502 ... P25786 N/A
    777947 8bzl:V (2.14) BS01 MG 3.4.25.1 GO:0000502 ... Q99436 N/A
    777948 8bzl:Y (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P28074 N/A
    777949 8bzm:A (2.69) BS01 dna ? GO:0003700 ... P85037 N/A
    777950 8bzm:A (2.69) BS02 dna ? GO:0003700 ... P85037 N/A
    777951 8bzm:B (2.69) BS01 dna ? GO:0003700 ... P32519 N/A
    777952 8bzm:B (2.69) BS02 dna ? GO:0003700 ... P32519 N/A
    777953 8bzm:E (2.69) BS01 dna ? GO:0003700 ... P85037 N/A
    777954 8bzm:E (2.69) BS02 dna ? GO:0003700 ... P85037 N/A
    777955 8bzm:H (2.69) BS01 dna ? GO:0003700 ... P32519 N/A
    777956 8bzm:H (2.69) BS02 dna ? GO:0003700 ... P32519 N/A
    777957 8bzm:I (2.69) BS01 dna ? GO:0003700 ... P85037 N/A
    777958 8bzm:J (2.69) BS01 dna ? GO:0003700 ... P85037 N/A
    777959 8bzn:A (2.19) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 38127066
    777960 8bzn:A (2.19) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 38127066
    777961 8bzp:A (1.86) BS01 SWM 2.7.11.24 GO:0004672 ... P53779 37487500
    777962 8bzp:A (1.86) BS02 C15 2.7.11.24 GO:0004672 ... P53779 37487500
    777963 8bzp:B (1.86) BS01 SWM 2.7.11.24 GO:0004672 ... P53779 37487500
    777964 8bzp:B (1.86) BS02 C15 2.7.11.24 GO:0004672 ... P53779 37487500
    777965 8bzs:A (2.25) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 37277066
    777966 8bzs:A (2.25) BS02 3WL 2.4.1.1 GO:0000166 ... P00489 37277066
    777967 8bzt:A (1.65) BS01 peptide N/A GO:0000122 ... P31947 N/A
    777968 8bzt:A (1.65) BS02 SKR N/A GO:0000122 ... P31947 N/A
    777969 8bzv:A (1.8) BS01 ADN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    777970 8bzv:B (1.8) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    777971 8bzv:B (1.8) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    777972 8bzw:A (1.1) BS01 peptide ? GO:0000122 ... P31947 37455289
    777973 8bzw:A (1.1) BS02 SSX ? GO:0000122 ... P31947 37455289
    777974 8bzw:A (1.1) BS03 GEH ? GO:0000122 ... P31947 37455289
    777975 8bzx:A (2.05) BS01 SW6 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    777976 8bzx:A (2.05) BS02 MG 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    777977 8bzx:B (2.05) BS01 SW6 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    777978 8bzx:B (2.05) BS02 MG 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    777979 8bzy:A (3.24) BS01 SZU ? GO:0002260 ... Q9NP59 36943194
    777980 8bzz:AAA (1.07) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36798036
    777981 8bzz:AAA (1.07) BS02 SVO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36798036
    777982 8bzz:AAA (1.07) BS03 SVO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36798036
    777983 8c00:B (2.9) BS01 rna ? GO:0000028 ... P26783 36996028
    777984 8c00:E (2.9) BS01 rna ? GO:0000028 ... Q01855 36996028
    777985 8c00:F (2.9) BS01 rna ? GO:0000462 ... P0CX51 36996028
    777986 8c00:H (2.9) BS01 rna ? GO:0000054 ... P0CX55 36996028
    777987 8c00:I (2.9) BS01 rna ? GO:0000028 ... P07280 36996028
    777988 8c00:K (2.9) BS01 rna ? GO:0002181 ... Q3E792 36996028
    777989 8c00:L (2.9) BS01 rna ? GO:0000028 ... Q3E7X9 36996028
    777990 8c00:Q (2.9) BS01 rna ? GO:0000462 ... P33442 36996028
    777991 8c00:S (2.9) BS01 rna ? GO:0002181 ... P0CX35 36996028
    777992 8c00:T (2.9) BS01 rna ? GO:0000462 ... P0CX37 36996028
    777993 8c00:U (2.9) BS01 rna ? GO:0002181 ... P26786 36996028
    777994 8c00:V (2.9) BS01 rna ? GO:0000462 ... P0CX39 36996028
    777995 8c00:W (2.9) BS01 rna ? GO:0000462 ... O13516 36996028
    777996 8c00:X (2.9) BS01 rna ? GO:0000028 ... P0CX47 36996028
    777997 8c00:Y (2.9) BS01 rna ? GO:0000462 ... P05756 36996028
    777998 8c00:Z (2.9) BS01 rna ? GO:0000028 ... P06367 36996028
    777999 8c00:b (2.9) BS01 rna ? GO:0002181 ... P0C0W1 36996028
    778000 8c00:c (2.9) BS01 rna ? GO:0000462 ... P0CX29 36996028

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).