SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    777801 8bh0:D (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    777802 8bh0:E (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    777803 8bh0:E (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    777804 8bh0:F (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    777805 8bh0:F (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    777806 8bh0:G (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    777807 8bh0:G (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    777808 8bh0:H (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    777809 8bh0:H (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    777810 8bh3:A (4.55) BS01 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    777811 8bh3:A (4.55) BS02 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    777812 8bh3:B (4.55) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    777813 8bh3:B (4.55) BS02 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    777814 8bh3:C (4.55) BS01 dna 3.6.4.- GO:0000723 ... P13010 37256950
    777815 8bh3:C (4.55) BS02 dna 3.6.4.- GO:0000723 ... P13010 37256950
    777816 8bh3:L (4.55) BS01 dna 3.6.4.- GO:0000723 ... P13010 37256950
    777817 8bh3:L (4.55) BS02 dna 3.6.4.- GO:0000723 ... P13010 37256950
    777818 8bh3:S (4.55) BS01 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    777819 8bh3:S (4.55) BS02 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    777820 8bh3:T (4.55) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    777821 8bh4:A (2.62) BS01 rna ? GO:0000027 ... P60422 37553384
    777822 8bh4:B (2.62) BS01 rna ? GO:0000027 ... P60438 37553384
    777823 8bh4:C (2.62) BS01 rna ? GO:0001070 ... P60723 37553384
    777824 8bh4:D (2.62) BS01 rna ? GO:0000027 ... P62399 37553384
    777825 8bh4:D (2.62) BS02 rna ? GO:0000027 ... P62399 37553384
    777826 8bh4:E (2.62) BS01 rna ? GO:0000027 ... P0AG55 37553384
    777827 8bh4:F (2.62) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    777828 8bh4:G (2.62) BS01 rna ? GO:0002181 ... P0AA10 37553384
    777829 8bh4:H (2.62) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    777830 8bh4:H (2.62) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    777831 8bh4:I (2.62) BS01 rna ? GO:0002181 ... P02413 37553384
    777832 8bh4:J (2.62) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    777833 8bh4:J (2.62) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    777834 8bh4:K (2.62) BS01 rna ? GO:0000027 ... P0AG44 37553384
    777835 8bh4:L (2.62) BS01 rna ? GO:0002181 ... P0C018 37553384
    777836 8bh4:L (2.62) BS02 rna ? GO:0002181 ... P0C018 37553384
    777837 8bh4:M (2.62) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    777838 8bh4:M (2.62) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    777839 8bh4:N (2.62) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    777840 8bh4:O (2.62) BS01 rna ? GO:0002181 ... P0AG48 37553384
    777841 8bh4:P (2.62) BS01 rna ? GO:0002181 ... P61175 37553384
    777842 8bh4:Q (2.62) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    777843 8bh4:R (2.62) BS01 rna ? GO:0000027 ... P60624 37553384
    777844 8bh4:S (2.62) BS01 rna ? GO:0000027 ... P68919 37553384
    777845 8bh4:T (2.62) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    777846 8bh4:U (2.62) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    777847 8bh4:V (2.62) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    777848 8bh4:W (2.62) BS01 rna ? GO:0000027 ... P0AG51 37553384
    777849 8bh4:a (2.62) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    777850 8bh4:b (2.62) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    777851 8bh4:c (2.62) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    777852 8bh4:d (2.62) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    777853 8bh4:e (2.62) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    777854 8bh4:f (2.62) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    777855 8bh4:g (2.62) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    777856 8bh4:h (2.62) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    777857 8bh4:i (2.62) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    777858 8bh4:j (2.62) BS01 rna ? GO:0002181 ... P02358 37553384
    777859 8bh4:k (2.62) BS01 rna ? GO:0000028 ... P02359 37553384
    777860 8bh4:k (2.62) BS02 rna ? GO:0000028 ... P02359 37553384
    777861 8bh4:l (2.62) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    777862 8bh4:m (2.62) BS01 rna ? GO:0002181 ... P0A7X3 37553384
    777863 8bh4:n (2.62) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    777864 8bh4:o (2.62) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    777865 8bh4:p (2.62) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    777866 8bh4:q (2.62) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    777867 8bh4:r (2.62) BS01 rna ? GO:0000028 ... P0AG59 37553384
    777868 8bh4:s (2.62) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    777869 8bh4:s (2.62) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    777870 8bh4:t (2.62) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    777871 8bh4:u (2.62) BS01 rna ? GO:0000028 ... P0AG63 37553384
    777872 8bh4:v (2.62) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    777873 8bh4:w (2.62) BS01 rna ? GO:0002181 ... P0A7U3 37553384
    777874 8bh4:x (2.62) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    777875 8bh4:y (2.62) BS01 rna ? GO:0000028 ... P68679 37553384
    777876 8bh6:b (3.7) BS01 rna ? GO:0003735 ... Q2FZ25 N/A
    777877 8bh6:c (3.7) BS01 rna ? GO:0003676 ... Q2FW12 N/A
    777878 8bh6:d (3.7) BS01 rna ? GO:0003723 ... Q2FXK6 N/A
    777879 8bh6:e (3.7) BS01 rna ? GO:0003723 ... Q2FW23 N/A
    777880 8bh6:f (3.7) BS01 rna ? GO:0003735 ... Q2G113 N/A
    777881 8bh6:g (3.7) BS01 rna ? GO:0000049 ... P48940 N/A
    777882 8bh6:h (3.7) BS01 rna ? GO:0003735 ... Q2FW20 N/A
    777883 8bh6:i (3.7) BS01 rna ? GO:0003723 ... Q2FW39 N/A
    777884 8bh6:j (3.7) BS01 rna ? GO:0000049 ... Q931G5 N/A
    777885 8bh6:k (3.7) BS01 rna ? GO:0003735 ... Q2FW31 N/A
    777886 8bh6:l (3.7) BS01 rna ? GO:0000049 ... P0A0H0 N/A
    777887 8bh6:m (3.7) BS01 rna ? GO:0000049 ... Q2FW30 N/A
    777888 8bh6:n (3.7) BS01 rna ? GO:0003735 ... Q2FW19 N/A
    777889 8bh6:o (3.7) BS01 rna ? GO:0003735 ... Q2G2Q1 N/A
    777890 8bh6:p (3.7) BS01 rna ? GO:0003735 ... Q2FZ45 N/A
    777891 8bh6:q (3.7) BS01 rna ? GO:0003735 ... Q2FW15 N/A
    777892 8bh6:r (3.7) BS01 rna ? GO:0003735 ... Q2G111 N/A
    777893 8bh6:s (3.7) BS01 rna ? GO:0003723 ... Q2FW10 N/A
    777894 8bh6:t (3.7) BS01 rna ? GO:0003723 ... Q2FXY6 N/A
    777895 8bh7:A (4.23) BS01 rna ? GO:0000028 ... Q2G2D3 N/A
    777896 8bh7:b (4.23) BS01 rna ? GO:0003735 ... Q2FZ25 N/A
    777897 8bh7:c (4.23) BS01 rna ? GO:0003676 ... Q2FW12 N/A
    777898 8bh7:d (4.23) BS01 rna ? GO:0003723 ... Q2FXK6 N/A
    777899 8bh7:e (4.23) BS01 rna ? GO:0003723 ... Q2FW23 N/A
    777900 8bh7:f (4.23) BS01 rna ? GO:0003735 ... Q2G113 N/A
    777901 8bh7:g (4.23) BS01 rna ? GO:0000049 ... P48940 N/A
    777902 8bh7:h (4.23) BS01 rna ? GO:0003735 ... Q2FW20 N/A
    777903 8bh7:i (4.23) BS01 rna ? GO:0003723 ... Q2FW39 N/A
    777904 8bh7:j (4.23) BS01 rna ? GO:0000049 ... Q931G5 N/A
    777905 8bh7:k (4.23) BS01 rna ? GO:0003735 ... Q2FW31 N/A
    777906 8bh7:l (4.23) BS01 rna ? GO:0000049 ... P0A0H0 N/A
    777907 8bh7:m (4.23) BS01 rna ? GO:0000049 ... Q2FW30 N/A
    777908 8bh7:n (4.23) BS01 rna ? GO:0003735 ... Q2FW19 N/A
    777909 8bh7:o (4.23) BS01 rna ? GO:0003735 ... Q2G2Q1 N/A
    777910 8bh7:p (4.23) BS01 rna ? GO:0003735 ... Q2FZ45 N/A
    777911 8bh7:q (4.23) BS01 rna ? GO:0003735 ... Q2FW15 N/A
    777912 8bh7:r (4.23) BS01 rna ? GO:0003735 ... Q2G111 N/A
    777913 8bh7:s (4.23) BS01 rna ? GO:0003723 ... Q2FW10 N/A
    777914 8bh7:t (4.23) BS01 rna ? GO:0003723 ... Q2FXY6 N/A
    777915 8bh8:A (2.88) BS01 rna ? GO:0000184 ... C5MJA9 N/A
    777916 8bh9:A (2.09) BS01 rna ? GO:0000184 ... C5MJA9 N/A
    777917 8bha:A (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    777918 8bha:A (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    777919 8bha:B (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    777920 8bha:B (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    777921 8bha:C (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    777922 8bha:C (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    777923 8bha:D (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    777924 8bha:D (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    777925 8bha:E (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    777926 8bha:E (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    777927 8bhb:A (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    777928 8bhb:A (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    777929 8bhb:B (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    777930 8bhb:B (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    777931 8bhb:C (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    777932 8bhb:C (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    777933 8bhb:D (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    777934 8bhb:D (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    777935 8bhb:E (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    777936 8bhb:E (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    777937 8bhf:A1 (3.1) BS01 rna ? GO:0002181 ... G1T0C1 N/A
    777938 8bhf:A1 (3.1) BS02 rna ? GO:0002181 ... G1T0C1 N/A
    777939 8bhf:B1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777940 8bhf:B3 (3.1) BS01 rna ? GO:0003735 ... G1TLT8 N/A
    777941 8bhf:C1 (3.1) BS01 rna ? GO:0003735 ... G1SCJ6 N/A
    777942 8bhf:C1 (3.1) BS02 rna ? GO:0003735 ... G1SCJ6 N/A
    777943 8bhf:C3 (3.1) BS01 rna ? GO:0003735 ... G1SS70 N/A
    777944 8bhf:D1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777945 8bhf:D3 (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    777946 8bhf:E1 (3.1) BS01 rna ? GO:0003723 ... G1TYL6 N/A
    777947 8bhf:E1 (3.1) BS02 rna ? GO:0003723 ... G1TYL6 N/A
    777948 8bhf:E3 (3.1) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 N/A
    777949 8bhf:F1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777950 8bhf:F1 (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    777951 8bhf:F3 (3.1) BS01 rna ? GO:0003723 ... G1TK17 N/A
    777952 8bhf:G1 (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 N/A
    777953 8bhf:G1 (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 N/A
    777954 8bhf:G3 (3.1) BS01 rna ? GO:0003723 ... G1TFM5 N/A
    777955 8bhf:H1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777956 8bhf:H3 (3.1) BS01 rna ? GO:0003735 ... G1TM55 N/A
    777957 8bhf:I1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777958 8bhf:I3 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777959 8bhf:J1 (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    777960 8bhf:J1 (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    777961 8bhf:J3 (3.1) BS01 rna ? GO:0003735 ... G1TJW1 N/A
    777962 8bhf:J3 (3.1) BS02 rna ? GO:0003735 ... G1TJW1 N/A
    777963 8bhf:K1 (3.1) BS01 rna ? GO:0003735 ... G1SE76 N/A
    777964 8bhf:K1 (3.1) BS02 rna ? GO:0003735 ... G1SE76 N/A
    777965 8bhf:K3 (3.1) BS01 rna ? GO:0003723 ... B7NZS8 N/A
    777966 8bhf:L1 (3.1) BS01 rna ? GO:0003723 ... G1SQH0 N/A
    777967 8bhf:L1 (3.1) BS02 rna ? GO:0003723 ... G1SQH0 N/A
    777968 8bhf:L3 (3.1) BS01 rna ? N/A G1T168 N/A
    777969 8bhf:M1 (3.1) BS01 rna ? GO:0002181 ... G1TXF6 N/A
    777970 8bhf:M3 (3.1) BS01 rna ? GO:0003735 ... G1TRM4 N/A
    777971 8bhf:M3 (3.1) BS02 MG ? GO:0003735 ... G1TRM4 N/A
    777972 8bhf:N1 (3.1) BS01 rna ? GO:0003735 ... G1SNY0 N/A
    777973 8bhf:N3 (3.1) BS01 rna ? GO:0003735 ... G1SFR8 N/A
    777974 8bhf:O1 (3.1) BS01 rna ? GO:0003735 ... G1SGR6 N/A
    777975 8bhf:O3 (3.1) BS01 rna ? GO:0003735 ... G1SP51 N/A
    777976 8bhf:O3 (3.1) BS02 rna ? GO:0003735 ... G1SP51 N/A
    777977 8bhf:P1 (3.1) BS01 rna ? GO:0003723 ... G1TDL2 N/A
    777978 8bhf:P3 (3.1) BS01 rna ? GO:0003735 ... G1T1F0 N/A
    777979 8bhf:Q1 (3.1) BS01 rna ? GO:0003735 ... G1SHG0 N/A
    777980 8bhf:Q3 (3.1) BS01 rna ? GO:0003723 ... G1U0Q2 N/A
    777981 8bhf:Q3 (3.1) BS02 rna ? GO:0003723 ... G1U0Q2 N/A
    777982 8bhf:R1 (3.1) BS01 rna ? GO:0003735 ... G1TUN8 N/A
    777983 8bhf:R3 (3.1) BS01 rna ? GO:0000462 ... G1SGX4 N/A
    777984 8bhf:S1 (3.1) BS01 rna ? GO:0003735 ... G1SF08 N/A
    777985 8bhf:S3 (3.1) BS01 rna ? GO:0003735 ... G1TU13 N/A
    777986 8bhf:T1 (3.1) BS01 rna ? GO:0003735 ... G1TXG5 N/A
    777987 8bhf:T1 (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 N/A
    777988 8bhf:T1 (3.1) BS03 MG ? GO:0003735 ... G1TXG5 N/A
    777989 8bhf:T3 (3.1) BS01 rna ? GO:0003676 ... G1TPG3 N/A
    777990 8bhf:U1 (3.1) BS01 rna ? GO:0000463 ... G1SIT5 N/A
    777991 8bhf:U1 (3.1) BS02 rna ? GO:0000463 ... G1SIT5 N/A
    777992 8bhf:U3 (3.1) BS01 rna ? GO:0000028 ... G1TN62 N/A
    777993 8bhf:V1 (3.1) BS01 rna ? GO:0003735 ... G1TBH2 N/A
    777994 8bhf:V3 (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    777995 8bhf:W1 (3.1) BS01 rna ? GO:0003735 ... U3KPD5 N/A
    777996 8bhf:W1 (3.1) BS02 rna ? GO:0003735 ... U3KPD5 N/A
    777997 8bhf:W1 (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 N/A
    777998 8bhf:X1 (3.1) BS01 rna ? GO:0003735 ... G1U001 N/A
    777999 8bhf:X3 (3.1) BS01 rna ? GO:0003735 ... G1TG89 N/A
    778000 8bhf:Y1 (3.1) BS01 rna ? GO:0003735 ... G1SYU7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).