SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    778001 8c00:d (2.9) BS01 rna ? GO:0000462 ... P0CX31 36996028
    778002 8c00:f (2.9) BS01 rna ? GO:0000028 ... P35997 36996028
    778003 8c00:g (2.9) BS01 rna ? GO:0002181 ... P0CX33 36996028
    778004 8c00:p (2.9) BS01 rna ? GO:0000056 ... Q99216 36996028
    778005 8c00:r (2.9) BS01 rna 2.7.11.1 GO:0000462 ... P40160 36996028
    778006 8c00:t (2.9) BS01 rna ? GO:0000461 ... Q07381 36996028
    778007 8c01:B (2.7) BS01 rna ? GO:0000028 ... P26783 36996028
    778008 8c01:E (2.7) BS01 rna ? GO:0000028 ... Q01855 36996028
    778009 8c01:F (2.7) BS01 rna ? GO:0000462 ... P0CX51 36996028
    778010 8c01:H (2.7) BS01 rna ? GO:0000054 ... P0CX55 36996028
    778011 8c01:I (2.7) BS01 rna ? GO:0000028 ... P07280 36996028
    778012 8c01:K (2.7) BS01 rna ? GO:0002181 ... Q3E792 36996028
    778013 8c01:L (2.7) BS01 rna ? GO:0000028 ... Q3E7X9 36996028
    778014 8c01:P (2.7) BS01 rna ? GO:0000028 ... P32905 36996028
    778015 8c01:Q (2.7) BS01 rna ? GO:0000462 ... P33442 36996028
    778016 8c01:R (2.7) BS01 rna ? GO:0000054 ... P25443 36996028
    778017 8c01:S (2.7) BS01 rna ? GO:0002181 ... P0CX35 36996028
    778018 8c01:T (2.7) BS01 rna ? GO:0000462 ... P0CX37 36996028
    778019 8c01:U (2.7) BS01 rna ? GO:0002181 ... P26786 36996028
    778020 8c01:V (2.7) BS01 rna ? GO:0000462 ... P0CX39 36996028
    778021 8c01:W (2.7) BS01 rna ? GO:0000462 ... O13516 36996028
    778022 8c01:X (2.7) BS01 rna ? GO:0000028 ... P0CX47 36996028
    778023 8c01:Y (2.7) BS01 rna ? GO:0000462 ... P05756 36996028
    778024 8c01:Z (2.7) BS01 rna ? GO:0000028 ... P06367 36996028
    778025 8c01:b (2.7) BS01 rna ? GO:0002181 ... P0C0W1 36996028
    778026 8c01:c (2.7) BS01 rna ? GO:0000462 ... P0CX29 36996028
    778027 8c01:d (2.7) BS01 rna ? GO:0000462 ... P0CX31 36996028
    778028 8c01:e (2.7) BS01 rna ? GO:0000447 ... P38333 36996028
    778029 8c01:f (2.7) BS01 rna ? GO:0000028 ... P35997 36996028
    778030 8c01:g (2.7) BS01 rna ? GO:0002181 ... P0CX33 36996028
    778031 8c01:o (2.7) BS01 rna 3.1.-.- GO:0000462 ... Q08444 36996028
    778032 8c01:o (2.7) BS02 ZN 3.1.-.- GO:0000462 ... Q08444 36996028
    778033 8c01:p (2.7) BS01 rna ? GO:0000056 ... Q99216 36996028
    778034 8c01:r (2.7) BS01 rna 2.7.11.1 GO:0000462 ... P40160 36996028
    778035 8c01:t (2.7) BS01 rna ? GO:0000461 ... Q07381 36996028
    778036 8c03:A (3.89) BS01 SZU ? GO:0002260 ... Q9NP59 36943194
    778037 8c04:A (1.1) BS01 peptide ? GO:0000122 ... P31947 37455289
    778038 8c04:A (1.1) BS02 MG ? GO:0000122 ... P31947 37455289
    778039 8c04:A (1.1) BS03 GEH ? GO:0000122 ... P31947 37455289
    778040 8c04:A (1.1) BS04 LF5 ? GO:0000122 ... P31947 37455289
    778041 8c05:A (2.5) BS01 FMN 2.7.7.65 GO:0000166 ... A0A2S5LZS0 37531459
    778042 8c05:A (2.5) BS02 MG 2.7.7.65 GO:0000166 ... A0A2S5LZS0 37531459
    778043 8c06:A (2.7) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    778044 8c06:A (2.7) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    778045 8c06:D (2.7) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    778046 8c06:D (2.7) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    778047 8c07:B (3.3) BS01 SY8 2.3.2.26 GO:0000209 ... O95071 37620400
    778048 8c07:I (3.3) BS01 SY8 ? N/A P0CG47 37620400
    778049 8c08:A (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    778050 8c08:B (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    778051 8c0a:A (1.7) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 38457493
    778052 8c0a:B (1.7) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 38457493
    778053 8c0c:B (2.2) BS01 T0C ? GO:0003677 ... P37231 37189440
    778054 8c0f:A (2.1005) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34315764
    778055 8c0f:A (2.1005) BS02 CA 3.6.5.- GO:0000226 ... P81947 34315764
    778056 8c0f:B (2.1005) BS01 GDP ? GO:0000226 ... Q6B856 34315764
    778057 8c0f:B (2.1005) BS02 SOZ ? GO:0000226 ... Q6B856 34315764
    778058 8c0f:C (2.1005) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34315764
    778059 8c0f:C (2.1005) BS02 CA 3.6.5.- GO:0000226 ... P81947 34315764
    778060 8c0f:D (2.1005) BS01 GDP ? GO:0000226 ... Q6B856 34315764
    778061 8c0f:F (2.1005) BS01 ACP N/A GO:0036211 ... N/A 34315764
    778062 8c0g:A (1.88) BS01 SRC 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0C6X7 N/A
    778063 8c0g:B (1.88) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0C6X7 N/A
    778064 8c0g:B (1.88) BS02 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0C6X7 N/A
    778065 8c0i:AAA (1.9) BS01 MG 3.4.19.5 GO:0016787 ... P37595 37095066
    778066 8c0i:AAA (1.9) BS02 MG 3.4.19.5 GO:0016787 ... P37595 37095066
    778067 8c0j:A (3.381) BS01 ZN 3.5.1.28 GO:0008745 ... A0A482PQR2 37276423
    778068 8c0j:C (3.381) BS01 ZN 3.5.1.28 GO:0008745 ... A0A482PQR2 37276423
    778069 8c0k:A (1.4) BS01 peptide ? GO:0000122 ... P31947 37455289
    778070 8c0k:A (1.4) BS02 SOI ? GO:0000122 ... P31947 37455289
    778071 8c0l:A (1.6) BS01 peptide N/A GO:0000122 ... P31947 N/A
    778072 8c0l:A (1.6) BS02 FC7 N/A GO:0000122 ... P31947 N/A
    778073 8c0p:A (1.97) BS01 SZI N/A GO:0008658 ... P18357 39060390
    778074 8c0p:B (1.97) BS01 SZI N/A GO:0008658 ... P18357 39060390
    778075 8c0q:A (1.67) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36829558
    778076 8c0q:A (1.67) BS02 SWU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36829558
    778077 8c0r:A (1.56) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36829558
    778078 8c0r:A (1.56) BS02 SXL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36829558
    778079 8c0s:A (2.0) BS01 SYU N/A GO:0008658 ... P18357 39060390
    778080 8c0s:B (2.0) BS01 SYU N/A GO:0008658 ... P18357 39060390
    778081 8c0t:A (1.28) BS01 CA ? GO:0005509 ... A0A1S4NYF2 37798285
    778082 8c0t:A (1.28) BS02 CA ? GO:0005509 ... A0A1S4NYF2 37798285
    778083 8c0u:A (2.112) BS01 ADP 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    778084 8c0u:A (2.112) BS02 AH0 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    778085 8c0u:B (2.112) BS01 ADP 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    778086 8c0u:B (2.112) BS02 VW0 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    778087 8c0v:A (4.1) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778088 8c0v:A (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778089 8c0v:B (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778090 8c0v:B (4.1) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778091 8c0v:B (4.1) BS03 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778092 8c0v:C (4.1) BS01 peptide 3.6.4.- GO:0005524 ... P24004 37741838
    778093 8c0v:C (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778094 8c0v:C (4.1) BS03 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778095 8c0v:D (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778096 8c0v:D (4.1) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778097 8c0v:D (4.1) BS03 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778098 8c0v:E (4.1) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778099 8c0v:E (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778100 8c0v:E (4.1) BS03 ADP 3.6.4.- GO:0005524 ... P24004 37741838
    778101 8c0v:F (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778102 8c0v:F (4.1) BS02 ADP 3.6.4.- GO:0005515 ... P33760 37741838
    778103 8c0w:A (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778104 8c0w:A (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778105 8c0w:A (4.7) BS03 MG 3.6.4.- GO:0005515 ... P33760 37741838
    778106 8c0w:B (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778107 8c0w:B (4.7) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778108 8c0w:B (4.7) BS03 MG 3.6.4.- GO:0005524 ... P24004 37741838
    778109 8c0w:C (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778110 8c0w:C (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778111 8c0w:D (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778112 8c0w:D (4.7) BS02 ADP 3.6.4.- GO:0005524 ... P24004 37741838
    778113 8c0w:E (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778114 8c0w:E (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    778115 8c0w:F (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778116 8c0w:F (4.7) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    778117 8c0w:F (4.7) BS03 ADP 3.6.4.- GO:0005524 ... P24004 37741838
    778118 8c0z:A (3.22) BS01 SF4 1.2.7.- GO:0009055 ... Q5P143 37267359
    778119 8c0z:A (3.22) BS02 T7R 1.2.7.- GO:0009055 ... Q5P143 37267359
    778120 8c0z:B (3.22) BS01 T7R 1.2.7.- GO:0009055 ... Q5P143 37267359
    778121 8c0z:B (3.22) BS02 MG 1.2.7.- GO:0009055 ... Q5P143 37267359
    778122 8c0z:B (3.22) BS03 SF4 1.2.7.- GO:0009055 ... Q5P143 37267359
    778123 8c0z:C (3.22) BS01 SF4 ? GO:0046872 ... Q5P144 37267359
    778124 8c0z:C (3.22) BS02 SF4 ? GO:0046872 ... Q5P144 37267359
    778125 8c0z:C (3.22) BS03 SF4 ? GO:0046872 ... Q5P144 37267359
    778126 8c0z:C (3.22) BS04 SF4 ? GO:0046872 ... Q5P144 37267359
    778127 8c0z:E (3.22) BS01 FAD ? GO:0016491 ... Q5P142 37267359
    778128 8c0z:F (3.22) BS01 SF4 ? GO:0046872 ... Q5P144 37267359
    778129 8c0z:F (3.22) BS02 SF4 ? GO:0046872 ... Q5P144 37267359
    778130 8c0z:F (3.22) BS03 SF4 ? GO:0046872 ... Q5P144 37267359
    778131 8c0z:F (3.22) BS04 SF4 ? GO:0046872 ... Q5P144 37267359
    778132 8c10:A (1.0) BS01 MG N/A GO:0000272 ... N/A 37016457
    778133 8c11:A (1.8) BS01 SY0 ? N/A O60885 N/A
    778134 8c13:L (2.3) BS01 SYF ? N/A P40337 37354907
    778135 8c14:A (1.93) BS01 MG 2.7.11.1 GO:0000212 ... O14965 39190548
    778136 8c14:A (1.93) BS02 ADP 2.7.11.1 GO:0000212 ... O14965 39190548
    778137 8c14:A (1.93) BS03 T5L 2.7.11.1 GO:0000212 ... O14965 39190548
    778138 8c14:A (1.93) BS04 T0L 2.7.11.1 GO:0000212 ... O14965 39190548
    778139 8c15:A (2.41) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778140 8c15:A (2.41) BS02 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778141 8c15:A (2.41) BS03 T4C 2.7.11.1 GO:0004672 ... O14965 39190548
    778142 8c15:A (2.41) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778143 8c16:A (4.2) BS01 FAD 1.18.1.2 GO:0004324 ... Q816D9 37371954
    778144 8c16:B (4.2) BS01 FAD 1.18.1.2 GO:0004324 ... Q816D9 37371954
    778145 8c16:C (4.2) BS01 FAD 1.18.1.2 GO:0004324 ... Q816D9 37371954
    778146 8c16:D (4.2) BS01 FAD 1.18.1.2 GO:0004324 ... Q816D9 37371954
    778147 8c17:A (2.25) BS01 peptide ? N/A Q15561 36825662
    778148 8c18:A (-1.00) BS01 AXT ? N/A S6BQ14 37117801
    778149 8c19:A (1.95) BS01 T6B 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 36839595
    778150 8c1a:A (1.9) BS01 T6O 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 36839595
    778151 8c1d:A (2.115) BS01 T2F 2.7.11.1 GO:0004672 ... O14965 39190548
    778152 8c1d:A (2.115) BS02 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778153 8c1d:A (2.115) BS03 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778154 8c1d:A (2.115) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778155 8c1e:A (2.798) BS01 T0X 2.7.11.1 GO:0000212 ... O14965 39190548
    778156 8c1e:A (2.798) BS02 MG 2.7.11.1 GO:0000212 ... O14965 39190548
    778157 8c1e:A (2.798) BS03 ATP 2.7.11.1 GO:0000212 ... O14965 39190548
    778158 8c1f:A (1.924) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778159 8c1f:A (1.924) BS02 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778160 8c1f:A (1.924) BS03 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778161 8c1f:A (1.924) BS04 T2O 2.7.11.1 GO:0004672 ... O14965 39190548
    778162 8c1g:A (1.96) BS01 T3I 2.7.11.1 GO:0004672 ... O14965 39190548
    778163 8c1g:A (1.96) BS02 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778164 8c1g:A (1.96) BS03 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778165 8c1g:A (1.96) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778166 8c1h:A (2.233) BS01 T3U 2.7.11.1 GO:0004672 ... O14965 39190548
    778167 8c1h:A (2.233) BS02 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778168 8c1h:A (2.233) BS03 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778169 8c1h:A (2.233) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778170 8c1i:A (2.81) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778171 8c1i:A (2.81) BS02 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778172 8c1i:A (2.81) BS03 T1L 2.7.11.1 GO:0004672 ... O14965 39190548
    778173 8c1i:A (2.81) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778174 8c1j:A (2.0) BS01 peptide ? GO:0008168 ... Q3UKX1 N/A
    778175 8c1j:A (2.0) BS02 QVR ? GO:0008168 ... Q3UKX1 N/A
    778176 8c1k:A (2.43) BS01 T4O 2.7.11.1 GO:0004672 ... O14965 39190548
    778177 8c1k:A (2.43) BS02 ADP 2.7.11.1 GO:0004672 ... O14965 39190548
    778178 8c1k:A (2.43) BS03 MG 2.7.11.1 GO:0004672 ... O14965 39190548
    778179 8c1k:A (2.43) BS04 T5L 2.7.11.1 GO:0004672 ... O14965 39190548
    778180 8c1l:B (2.0) BS01 peptide ? N/A P41235 N/A
    778181 8c1m:A (2.84) BS01 MG 2.7.11.1 GO:0000212 ... O14965 39190548
    778182 8c1m:A (2.84) BS02 T4X 2.7.11.1 GO:0000212 ... O14965 39190548
    778183 8c1m:A (2.84) BS03 ADP 2.7.11.1 GO:0000212 ... O14965 39190548
    778184 8c1n:A (1.7) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    778185 8c1n:A (1.7) BS02 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    778186 8c1n:B (1.7) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    778187 8c1n:B (1.7) BS02 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    778188 8c1p:A (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    778189 8c1p:A (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    778190 8c1p:B (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    778191 8c1p:B (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    778192 8c1p:C (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    778193 8c1p:C (2.9) BS02 CYZ ? GO:0001540 ... P19490 37704721
    778194 8c1p:C (2.9) BS03 GLU ? GO:0001540 ... P19490 37704721
    778195 8c1p:D (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    778196 8c1p:D (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    778197 8c1q:A (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    778198 8c1q:B (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    778199 8c1q:C (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    778200 8c1q:D (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).