SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    778601 8bim:w (2.04) BS01 rna ? GO:0002181 ... P0A7U3 37553384
    778602 8bim:x (2.04) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    778603 8bim:y (2.04) BS01 rna ? GO:0000028 ... P68679 37553384
    778604 8bin:A (1.5) BS01 QRR 2.7.10.1 GO:0004672 ... P29317 37094449
    778605 8bio:A (1.6) BS01 QRD 2.7.10.1 GO:0004672 ... P29317 37094449
    778606 8bip:B (3.1) BS01 rna ? GO:0000001 ... Q12387 37079644
    778607 8bip:LA (3.1) BS01 rna ? GO:0002181 ... P0CX45 37079644
    778608 8bip:LA (3.1) BS02 MG ? GO:0002181 ... P0CX45 37079644
    778609 8bip:LB (3.1) BS01 rna ? GO:0000027 ... P14126 37079644
    778610 8bip:LC (3.1) BS01 rna ? GO:0002181 ... P10664 37079644
    778611 8bip:LC (3.1) BS02 rna ? GO:0002181 ... P10664 37079644
    778612 8bip:LD (3.1) BS01 rna ? GO:0000027 ... P26321 37079644
    778613 8bip:LD (3.1) BS02 rna ? GO:0000027 ... P26321 37079644
    778614 8bip:LE (3.1) BS01 rna ? GO:0000027 ... P05739 37079644
    778615 8bip:LF (3.1) BS01 rna ? GO:0000463 ... P05737 37079644
    778616 8bip:LF (3.1) BS02 rna ? GO:0000463 ... P05737 37079644
    778617 8bip:LG (3.1) BS01 rna ? GO:0000470 ... P17076 37079644
    778618 8bip:LG (3.1) BS02 rna ? GO:0000470 ... P17076 37079644
    778619 8bip:LH (3.1) BS01 rna ? GO:0002181 ... P05738 37079644
    778620 8bip:LI (3.1) BS01 rna ? GO:0000027 ... P41805 37079644
    778621 8bip:LI (3.1) BS02 rna ? GO:0000027 ... P41805 37079644
    778622 8bip:LJ (3.1) BS01 rna ? GO:0000027 ... Q3E757 37079644
    778623 8bip:LJ (3.1) BS02 rna ? GO:0000027 ... Q3E757 37079644
    778624 8bip:LL (3.1) BS01 rna ? GO:0002181 ... Q12690 37079644
    778625 8bip:LL (3.1) BS02 rna ? GO:0002181 ... Q12690 37079644
    778626 8bip:LM (3.1) BS01 rna ? GO:0000027 ... P36105 37079644
    778627 8bip:LN (3.1) BS01 rna ? GO:0000470 ... P05748 37079644
    778628 8bip:LN (3.1) BS02 rna ? GO:0000470 ... P05748 37079644
    778629 8bip:LO (3.1) BS01 rna ? GO:0000470 ... P26784 37079644
    778630 8bip:LP (3.1) BS01 rna ? GO:0000448 ... P05740 37079644
    778631 8bip:LP (3.1) BS02 rna ? GO:0000448 ... P05740 37079644
    778632 8bip:LQ (3.1) BS01 rna ? GO:0002181 ... P0CX49 37079644
    778633 8bip:LR (3.1) BS01 rna ? GO:0002181 ... P0CX82 37079644
    778634 8bip:LS (3.1) BS01 rna ? GO:0002181 ... P0CX23 37079644
    778635 8bip:LS (3.1) BS02 rna ? GO:0002181 ... P0CX23 37079644
    778636 8bip:LT (3.1) BS01 rna ? GO:0002181 ... Q02753 37079644
    778637 8bip:LT (3.1) BS02 rna ? GO:0002181 ... Q02753 37079644
    778638 8bip:LU (3.1) BS01 rna ? GO:0003735 ... P05749 37079644
    778639 8bip:LV (3.1) BS01 rna ? GO:0002181 ... P0CX41 37079644
    778640 8bip:LW (3.1) BS01 rna ? GO:0003735 ... P04449 37079644
    778641 8bip:LX (3.1) BS01 rna ? GO:0003735 ... P04456 37079644
    778642 8bip:LX (3.1) BS02 rna ? GO:0003735 ... P04456 37079644
    778643 8bip:LY (3.1) BS01 rna ? GO:0002181 ... P05743 37079644
    778644 8bip:LY (3.1) BS02 rna ? GO:0002181 ... P05743 37079644
    778645 8bip:LZ (3.1) BS01 rna ? GO:0002181 ... P0C2H6 37079644
    778646 8bip:La (3.1) BS01 rna ? GO:0002181 ... P02406 37079644
    778647 8bip:Lb (3.1) BS01 rna ? GO:0002181 ... P05747 37079644
    778648 8bip:Lc (3.1) BS01 rna ? GO:0002181 ... P14120 37079644
    778649 8bip:Ld (3.1) BS01 rna ? GO:0002181 ... P0C2H8 37079644
    778650 8bip:Le (3.1) BS01 rna ? GO:0002181 ... P38061 37079644
    778651 8bip:Le (3.1) BS02 MG ? GO:0002181 ... P38061 37079644
    778652 8bip:Lf (3.1) BS01 rna ? GO:0000027 ... P05744 37079644
    778653 8bip:Lg (3.1) BS01 rna ? GO:0002181 ... P87262 37079644
    778654 8bip:Lg (3.1) BS02 ZN ? GO:0002181 ... P87262 37079644
    778655 8bip:Lh (3.1) BS01 rna ? GO:0000463 ... P0CX84 37079644
    778656 8bip:Lh (3.1) BS02 rna ? GO:0000463 ... P0CX84 37079644
    778657 8bip:Li (3.1) BS01 rna ? GO:0000470 ... P05745 37079644
    778658 8bip:Lj (3.1) BS01 rna ? GO:0000448 ... P49166 37079644
    778659 8bip:Lj (3.1) BS02 rna ? GO:0000448 ... P49166 37079644
    778660 8bip:Lj (3.1) BS03 ZN ? GO:0000448 ... P49166 37079644
    778661 8bip:Lk (3.1) BS01 rna ? GO:0002181 ... P49167 37079644
    778662 8bip:Ll (3.1) BS01 rna ? GO:0002181 ... P04650 37079644
    778663 8bip:Ll (3.1) BS02 rna ? GO:0002181 ... P04650 37079644
    778664 8bip:Lm (3.1) BS01 rna ? GO:0003735 ... P0CH08 37079644
    778665 8bip:Lm (3.1) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    778666 8bip:Lo (3.1) BS01 rna ? GO:0002181 ... P0CX27 37079644
    778667 8bip:Lo (3.1) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    778668 8bip:Lp (3.1) BS01 rna ? GO:0002181 ... P0CX25 37079644
    778669 8bip:Lp (3.1) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    778670 8biq:A (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778671 8biq:B (2.8) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778672 8biq:C (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778673 8biq:D (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778674 8bir:A (2.4) BS01 SAH ? GO:0008168 ... Q7MY04 36963398
    778675 8bir:A (2.4) BS02 QOI ? GO:0008168 ... Q7MY04 36963398
    778676 8bir:B (2.4) BS01 SAH ? GO:0008168 ... Q7MY04 36963398
    778677 8bir:B (2.4) BS02 QOI ? GO:0008168 ... Q7MY04 36963398
    778678 8bis:A (2.266) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778679 8bis:A (2.266) BS02 2AG 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778680 8bis:A (2.266) BS03 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778681 8bis:C (2.266) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778682 8bis:C (2.266) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778683 8bit:A (3.1) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778684 8bit:A (3.1) BS02 COA 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778685 8bit:B (3.1) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778686 8bit:B (3.1) BS02 COA 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    778687 8biu:A (1.899) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778688 8biu:A (1.899) BS02 2KT 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778689 8biu:A (1.899) BS03 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778690 8biu:G (1.899) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778691 8biu:G (1.899) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778692 8biv:A (2.22) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778693 8biv:A (2.22) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778694 8biv:E (2.22) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778695 8biv:E (2.22) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778696 8biw:A (1.981) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778697 8biw:A (1.981) BS02 2AG 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778698 8biw:A (1.981) BS03 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778699 8biw:E (1.981) BS01 2AG 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778700 8biw:E (1.981) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778701 8biw:E (1.981) BS03 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778702 8bix:A (1.59) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778703 8bix:A (1.59) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778704 8bix:C (1.59) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778705 8bix:C (1.59) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778706 8biz:A (1.891) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778707 8biz:A (1.891) BS02 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778708 8biz:A (1.891) BS03 CYS 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778709 8biz:E (1.891) BS01 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778710 8biz:E (1.891) BS02 CYS 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778711 8biz:E (1.891) BS03 PLP 4.4.1.1 GO:0003824 ... B6K8Y1 36883335
    778712 8bj0:A (2.6) BS01 peptide ? N/A Q14160 N/A
    778713 8bj3:A (1.61) BS01 QNX 2.6.1.9 GO:0000105 ... A0A072U7F9 36842242
    778714 8bj3:A (1.61) BS02 QNX 2.6.1.9 GO:0000105 ... A0A072U7F9 36842242
    778715 8bj3:B (1.61) BS01 QNX 2.6.1.9 GO:0000105 ... A0A072U7F9 36842242
    778716 8bj3:B (1.61) BS02 QNX 2.6.1.9 GO:0000105 ... A0A072U7F9 36842242
    778717 8bj5:A (2.72) BS01 NAP 1.5.1.48 GO:0016491 ... M2QI47 N/A
    778718 8bj5:B (2.72) BS01 NAP 1.5.1.48 GO:0016491 ... M2QI47 N/A
    778719 8bj5:C (2.72) BS01 NAP 1.5.1.48 GO:0016491 ... M2QI47 N/A
    778720 8bj5:D (2.72) BS01 NAP 1.5.1.48 GO:0016491 ... M2QI47 N/A
    778721 8bj7:A (1.04) BS01 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778722 8bj7:A (1.04) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778723 8bj7:A (1.04) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778724 8bj7:A (1.04) BS04 VHR 1.12.7.2 GO:0005506 ... P07598 36937599
    778725 8bj8:A (1.01) BS01 VHR 1.12.7.2 GO:0005506 ... P07598 36937599
    778726 8bj8:A (1.01) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778727 8bj8:A (1.01) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778728 8bj8:A (1.01) BS04 SF4 1.12.7.2 GO:0005506 ... P07598 36937599
    778729 8bj9:A (2.069) BS01 FE N/A GO:0006826 ... N/A 37428843
    778730 8bj9:A (2.069) BS02 5LC N/A GO:0006826 ... N/A 37428843
    778731 8bja:A (3.0) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778732 8bja:A (3.0) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778733 8bja:A (3.0) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778734 8bja:B (3.0) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778735 8bja:B (3.0) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778736 8bja:B (3.0) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37409633
    778737 8bjd:A (2.4) BS01 9QN 5.2.1.8 GO:0003755 ... Q5ZXE0 37633566
    778738 8bje:A (1.49) BS01 WRL 5.2.1.8 GO:0003755 ... Q5ZXE0 37633566
    778739 8bjf:A (3.0) BS01 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778740 8bjf:A (3.0) BS02 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778741 8bjf:A (3.0) BS03 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778742 8bjf:A (3.0) BS04 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778743 8bjf:A (3.0) BS05 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778744 8bjf:A (3.0) BS06 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    778745 8bjg:A (1.4) BS01 peptide ? GO:0001836 ... P31947 36926879
    778746 8bjg:A (1.4) BS02 MG ? GO:0001836 ... P31947 36926879
    778747 8bjg:A (1.4) BS03 MG ? GO:0001836 ... P31947 36926879
    778748 8bjg:A (1.4) BS04 QL0 ? GO:0001836 ... P31947 36926879
    778749 8bjh:A (1.69) BS01 ADP 3.6.4.- GO:0000287 ... P68135 37747912
    778750 8bjh:A (1.69) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    778751 8bji:A (1.75) BS01 ADP 3.6.4.- GO:0000287 ... P68135 37747912
    778752 8bjj:A (1.699) BS01 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    778753 8bjj:A (1.699) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    778754 8bjk:A (1.35) BS01 ZN ? N/A F8W4B7 37392419
    778755 8bjk:A (1.35) BS02 QXF ? N/A F8W4B7 37392419
    778756 8bjl:A (0.97) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    778757 8bjl:A (0.97) BS02 QXO 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    778758 8bjl:A (0.97) BS03 QXO 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    778759 8bjn:A (1.4) BS01 peptide ? GO:0001836 ... P31947 36926879
    778760 8bjn:A (1.4) BS02 MG ? GO:0001836 ... P31947 36926879
    778761 8bjn:A (1.4) BS03 QL9 ? GO:0001836 ... P31947 36926879
    778762 8bjo:A (1.51) BS01 BEM ? N/A A0A7I9C8Z1 40102416
    778763 8bjo:A (1.51) BS02 BEM ? N/A A0A7I9C8Z1 40102416
    778764 8bjo:A (1.51) BS03 BEM ? N/A A0A7I9C8Z1 40102416
    778765 8bjo:A (1.51) BS04 BEM ? N/A A0A7I9C8Z1 40102416
    778766 8bjo:A (1.51) BS05 BEM ? N/A A0A7I9C8Z1 40102416
    778767 8bjp:AAA (2.1) BS01 MG N/A GO:0006355 ... N/A 39843904
    778768 8bjq:B (3.8) BS01 rna ? GO:0000001 ... Q12387 37079644
    778769 8bjq:D (3.8) BS01 rna ? GO:0000001 ... Q12387 37079644
    778770 8bjq:LA (3.8) BS01 rna ? GO:0002181 ... P0CX45 37079644
    778771 8bjq:LA (3.8) BS02 MG ? GO:0002181 ... P0CX45 37079644
    778772 8bjq:LB (3.8) BS01 rna ? GO:0000027 ... P14126 37079644
    778773 8bjq:LC (3.8) BS01 rna ? GO:0002181 ... P10664 37079644
    778774 8bjq:LC (3.8) BS02 rna ? GO:0002181 ... P10664 37079644
    778775 8bjq:LD (3.8) BS01 rna ? GO:0000027 ... P26321 37079644
    778776 8bjq:LD (3.8) BS02 rna ? GO:0000027 ... P26321 37079644
    778777 8bjq:LE (3.8) BS01 rna ? GO:0000027 ... P05739 37079644
    778778 8bjq:LF (3.8) BS01 rna ? GO:0000463 ... P05737 37079644
    778779 8bjq:LF (3.8) BS02 rna ? GO:0000463 ... P05737 37079644
    778780 8bjq:LG (3.8) BS01 rna ? GO:0000470 ... P17076 37079644
    778781 8bjq:LG (3.8) BS02 rna ? GO:0000470 ... P17076 37079644
    778782 8bjq:LH (3.8) BS01 rna ? GO:0002181 ... P05738 37079644
    778783 8bjq:LI (3.8) BS01 rna ? GO:0000027 ... P41805 37079644
    778784 8bjq:LI (3.8) BS02 rna ? GO:0000027 ... P41805 37079644
    778785 8bjq:LJ (3.8) BS01 rna ? GO:0000027 ... Q3E757 37079644
    778786 8bjq:LJ (3.8) BS02 rna ? GO:0000027 ... Q3E757 37079644
    778787 8bjq:LL (3.8) BS01 rna ? GO:0002181 ... Q12690 37079644
    778788 8bjq:LL (3.8) BS02 rna ? GO:0002181 ... Q12690 37079644
    778789 8bjq:LM (3.8) BS01 rna ? GO:0000027 ... P36105 37079644
    778790 8bjq:LN (3.8) BS01 rna ? GO:0000470 ... P05748 37079644
    778791 8bjq:LN (3.8) BS02 rna ? GO:0000470 ... P05748 37079644
    778792 8bjq:LO (3.8) BS01 rna ? GO:0000470 ... P26784 37079644
    778793 8bjq:LP (3.8) BS01 rna ? GO:0000448 ... P05740 37079644
    778794 8bjq:LP (3.8) BS02 rna ? GO:0000448 ... P05740 37079644
    778795 8bjq:LQ (3.8) BS01 rna ? GO:0002181 ... P0CX49 37079644
    778796 8bjq:LR (3.8) BS01 rna ? GO:0002181 ... P0CX82 37079644
    778797 8bjq:LS (3.8) BS01 rna ? GO:0002181 ... P0CX23 37079644
    778798 8bjq:LS (3.8) BS02 rna ? GO:0002181 ... P0CX23 37079644
    778799 8bjq:LT (3.8) BS01 rna ? GO:0002181 ... Q02753 37079644
    778800 8bjq:LT (3.8) BS02 rna ? GO:0002181 ... Q02753 37079644

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).