SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    779201 8c6j:C (2.8) BS02 GTP ? GO:0000398 ... Q15029 36867703
    779202 8c6j:D (2.8) BS01 rna ? GO:0003014 ... Q9H875 36867703
    779203 8c6j:D (2.8) BS02 rna ? GO:0003014 ... Q9H875 36867703
    779204 8c6j:F (2.8) BS01 rna ? GO:0000398 ... Q8WUQ7 36867703
    779205 8c6j:G (2.8) BS01 rna ? GO:0003723 ... Q9Y421 36867703
    779206 8c6j:J (2.8) BS01 rna ? GO:0000398 ... O43660 36867703
    779207 8c6j:K (2.8) BS01 rna ? GO:0000122 ... Q13573 36867703
    779208 8c6j:K (2.8) BS02 rna ? GO:0000122 ... Q13573 36867703
    779209 8c6j:L (2.8) BS01 rna ? GO:0000398 ... P41223 36867703
    779210 8c6j:L (2.8) BS02 ZN ? GO:0000398 ... P41223 36867703
    779211 8c6j:L (2.8) BS03 ZN ? GO:0000398 ... P41223 36867703
    779212 8c6j:L (2.8) BS04 ZN ? GO:0000398 ... P41223 36867703
    779213 8c6j:M (2.8) BS01 rna ? GO:0000398 ... Q9NW64 36867703
    779214 8c6j:M (2.8) BS02 rna ? GO:0000398 ... Q9NW64 36867703
    779215 8c6j:M (2.8) BS03 ZN ? GO:0000398 ... Q9NW64 36867703
    779216 8c6j:M (2.8) BS04 ZN ? GO:0000398 ... Q9NW64 36867703
    779217 8c6j:M (2.8) BS05 ZN ? GO:0000398 ... Q9NW64 36867703
    779218 8c6j:O (2.8) BS01 rna ? GO:0000077 ... Q99459 36867703
    779219 8c6j:O (2.8) BS02 rna ? GO:0000077 ... Q99459 36867703
    779220 8c6j:P (2.8) BS01 rna ? GO:0000398 ... Q9P013 36867703
    779221 8c6j:P (2.8) BS02 rna ? GO:0000398 ... Q9P013 36867703
    779222 8c6j:P (2.8) BS03 rna ? GO:0000398 ... Q9P013 36867703
    779223 8c6j:R (2.8) BS01 rna ? GO:0000398 ... Q9UQ35 36867703
    779224 8c6j:R (2.8) BS02 rna ? GO:0000398 ... Q9UQ35 36867703
    779225 8c6j:S (2.8) BS01 rna ? GO:0000398 ... Q9BZJ0 36867703
    779226 8c6j:V (2.8) BS01 rna 3.6.4.13 GO:0000398 ... Q14562 36867703
    779227 8c6j:Y (2.8) BS01 rna ? GO:0000398 ... P08579 36867703
    779228 8c6j:a (2.8) BS01 rna ? GO:0000245 ... P62316 36867703
    779229 8c6j:b (2.8) BS01 rna ? GO:0000387 ... P14678 36867703
    779230 8c6j:c (2.8) BS01 rna ? GO:0000243 ... P62314 36867703
    779231 8c6j:d (2.8) BS01 rna ? GO:0000243 ... P62318 36867703
    779232 8c6j:e (2.8) BS01 rna ? GO:0000245 ... P62304 36867703
    779233 8c6j:f (2.8) BS01 rna ? GO:0000387 ... P62306 36867703
    779234 8c6j:g (2.8) BS01 rna ? GO:0000245 ... P62308 36867703
    779235 8c6j:h (2.8) BS01 rna ? GO:0000375 ... O95391 36867703
    779236 8c6j:h (2.8) BS02 IHP ? GO:0000375 ... O95391 36867703
    779237 8c6j:l (2.8) BS01 rna ? GO:0000243 ... P62314 36867703
    779238 8c6j:m (2.8) BS01 rna ? GO:0000245 ... P62316 36867703
    779239 8c6j:n (2.8) BS01 rna ? GO:0000243 ... P62318 36867703
    779240 8c6j:o (2.8) BS01 rna ? GO:0000398 ... O60508 36867703
    779241 8c6j:o (2.8) BS02 rna ? GO:0000398 ... O60508 36867703
    779242 8c6j:o (2.8) BS03 rna ? GO:0000398 ... O60508 36867703
    779243 8c6j:p (2.8) BS01 rna ? GO:0000245 ... P62304 36867703
    779244 8c6j:q (2.8) BS01 rna ? GO:0000387 ... P62306 36867703
    779245 8c6j:r (2.8) BS01 rna ? GO:0000245 ... P62308 36867703
    779246 8c6j:y (2.8) BS01 rna ? GO:0000398 ... O95926 36867703
    779247 8c6j:y (2.8) BS02 rna ? GO:0000398 ... O95926 36867703
    779248 8c6j:z (2.8) BS01 rna ? GO:0000479 ... Q6IQ49 36867703
    779249 8c6k:L (2.86) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    779250 8c6k:L (2.86) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    779251 8c6k:L (2.86) BS03 BPH ? GO:0009772 ... Q3J1A5 36837657
    779252 8c6k:L (2.86) BS04 U10 ? GO:0009772 ... Q3J1A5 36837657
    779253 8c6k:L (2.86) BS05 BCL ? GO:0009772 ... Q3J1A5 36837657
    779254 8c6k:L (2.86) BS06 BPH ? GO:0009772 ... Q3J1A5 36837657
    779255 8c6k:L (2.86) BS07 FE ? GO:0009772 ... Q3J1A5 36837657
    779256 8c6k:L (2.86) BS08 U10 ? GO:0009772 ... Q3J1A5 36837657
    779257 8c6k:M (2.86) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    779258 8c6k:M (2.86) BS02 BPH ? GO:0009772 ... Q3J1A6 36837657
    779259 8c6k:M (2.86) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    779260 8c6k:M (2.86) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    779261 8c6k:M (2.86) BS05 BPH ? GO:0009772 ... Q3J1A6 36837657
    779262 8c6k:M (2.86) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    779263 8c6k:M (2.86) BS07 U10 ? GO:0009772 ... Q3J1A6 36837657
    779264 8c6k:M (2.86) BS08 SPN ? GO:0009772 ... Q3J1A6 36837657
    779265 8c6l:A (1.8) BS01 TO6 2.7.11.1 GO:0004672 ... P68400 N/A
    779266 8c6m:A (1.8) BS01 TNO 2.7.11.1 GO:0004672 ... P68400 N/A
    779267 8c6n:A (2.05) BS01 TN0 2.7.11.1 GO:0004672 ... P68400 N/A
    779268 8c6o:A (2.2) BS01 CZH ? GO:0005509 ... Q27709 37047842
    779269 8c6o:B (2.2) BS01 CZH ? GO:0005509 ... Q27709 37047842
    779270 8c6p:A (1.1) BS01 TT6 3.4.23.22 GO:0004190 ... P11838 37130057
    779271 8c6q:A (1.25) BS01 TU5 3.4.23.22 GO:0004190 ... P11838 37130057
    779272 8c6s:A (1.1) BS01 TUU 3.4.23.22 GO:0004190 ... P11838 37130057
    779273 8c6t:A (1.15) BS01 TV6 3.4.23.22 GO:0004190 ... P11838 37130057
    779274 8c6t:A (1.15) BS02 TV6 3.4.23.22 GO:0004190 ... P11838 37130057
    779275 8c6v:D (2.15) BS01 ZN N/A N/A A0A076V8I4 39571786
    779276 8c6z:A (1.85) BS01 CO ? GO:0005975 ... F8UNI4 39283899
    779277 8c6z:A (1.85) BS02 DW0 ? GO:0005975 ... F8UNI4 39283899
    779278 8c6z:A (1.85) BS03 DW0 ? GO:0005975 ... F8UNI4 39283899
    779279 8c70:A (1.65) BS01 TVI 3.4.23.22 GO:0004190 ... P11838 37130057
    779280 8c71:A (1.1) BS01 TVO 3.4.23.22 GO:0004190 ... P11838 37130057
    779281 8c72:A (1.2) BS01 TW0 3.4.23.22 GO:0004190 ... P11838 37130057
    779282 8c72:A (1.2) BS02 TW0 3.4.23.22 GO:0004190 ... P11838 37130057
    779283 8c73:A (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779284 8c73:B (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779285 8c73:C (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779286 8c73:D (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779287 8c74:A (1.15) BS01 TWX 3.4.23.22 GO:0004190 ... P11838 37130057
    779288 8c74:A (1.15) BS02 TWX 3.4.23.22 GO:0004190 ... P11838 37130057
    779289 8c76:A (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779290 8c76:B (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779291 8c76:C (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779292 8c76:D (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    779293 8c77:A (1.7) BS01 TXH 3.4.22.15 GO:0006508 ... P07711 38630165
    779294 8c77:B (1.7) BS01 TXH 3.4.22.15 GO:0006508 ... P07711 38630165
    779295 8c77:C (1.7) BS01 TXH 3.4.22.15 GO:0006508 ... P07711 38630165
    779296 8c77:D (1.7) BS01 TXH 3.4.22.15 GO:0006508 ... P07711 38630165
    779297 8c78:A (1.8) BS01 TWI ? N/A P41182 37026591
    779298 8c79:A (3.1) BS01 NDP 1.1.1.44 GO:0000166 ... Q18L02 37239962
    779299 8c79:A (3.1) BS02 PO4 1.1.1.44 GO:0000166 ... Q18L02 37239962
    779300 8c79:B (3.1) BS01 NDP 1.1.1.44 GO:0000166 ... Q18L02 37239962
    779301 8c79:B (3.1) BS02 PO4 1.1.1.44 GO:0000166 ... Q18L02 37239962
    779302 8c7c:L (2.6) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    779303 8c7c:L (2.6) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    779304 8c7c:L (2.6) BS03 BPH ? GO:0009772 ... Q3J1A5 36837657
    779305 8c7c:L (2.6) BS04 BCL ? GO:0009772 ... Q3J1A5 36837657
    779306 8c7c:L (2.6) BS05 BPH ? GO:0009772 ... Q3J1A5 36837657
    779307 8c7c:L (2.6) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    779308 8c7c:L (2.6) BS07 U10 ? GO:0009772 ... Q3J1A5 36837657
    779309 8c7c:M (2.6) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    779310 8c7c:M (2.6) BS02 BPH ? GO:0009772 ... Q3J1A6 36837657
    779311 8c7c:M (2.6) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    779312 8c7c:M (2.6) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    779313 8c7c:M (2.6) BS05 BPH ? GO:0009772 ... Q3J1A6 36837657
    779314 8c7c:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    779315 8c7c:M (2.6) BS07 U10 ? GO:0009772 ... Q3J1A6 36837657
    779316 8c7c:M (2.6) BS08 SPN ? GO:0009772 ... Q3J1A6 36837657
    779317 8c7f:A (1.52) BS01 XYP 3.2.1.21 GO:0004553 ... Q9WXT1 N/A
    779318 8c7f:A (1.52) BS02 XYP 3.2.1.21 GO:0004553 ... Q9WXT1 N/A
    779319 8c7f:B (1.52) BS01 XYP 3.2.1.21 GO:0004553 ... Q9WXT1 N/A
    779320 8c7f:B (1.52) BS02 XYP 3.2.1.21 GO:0004553 ... Q9WXT1 N/A
    779321 8c7p:A (3.0) BS01 B12 ? GO:0016020 ... Q3SFD8 38733996
    779322 8c7r:A (2.53) BS01 T8R 3.1.4.39 GO:0003676 ... Q64610 37976710
    779323 8c7r:A (2.53) BS02 5JK 3.1.4.39 GO:0003676 ... Q64610 37976710
    779324 8c7r:A (2.53) BS03 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    779325 8c7r:A (2.53) BS04 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    779326 8c7r:A (2.53) BS05 CA 3.1.4.39 GO:0003676 ... Q64610 37976710
    779327 8c7r:A (2.53) BS06 CA 3.1.4.39 GO:0003676 ... Q64610 37976710
    779328 8c7s:A (3.05) BS01 dna ? GO:0003677 ... Q2FHI3 37326020
    779329 8c7s:A (3.05) BS02 dna ? GO:0003677 ... Q2FHI3 37326020
    779330 8c7s:A (3.05) BS03 GTP ? GO:0003677 ... Q2FHI3 37326020
    779331 8c7s:A (3.05) BS04 ILE ? GO:0003677 ... Q2FHI3 37326020
    779332 8c7s:B (3.05) BS01 dna ? GO:0003677 ... Q2FHI3 37326020
    779333 8c7s:B (3.05) BS02 dna ? GO:0003677 ... Q2FHI3 37326020
    779334 8c7s:B (3.05) BS03 GTP ? GO:0003677 ... Q2FHI3 37326020
    779335 8c7s:B (3.05) BS04 ILE ? GO:0003677 ... Q2FHI3 37326020
    779336 8c7u:A (3.15) BS01 dna ? GO:0003677 ... Q834K5 37326020
    779337 8c7u:A (3.15) BS02 dna ? GO:0003677 ... Q834K5 37326020
    779338 8c7u:A (3.15) BS03 LEU ? GO:0003677 ... Q834K5 37326020
    779339 8c7u:B (3.15) BS01 dna ? GO:0003677 ... Q834K5 37326020
    779340 8c7u:B (3.15) BS02 dna ? GO:0003677 ... Q834K5 37326020
    779341 8c7u:B (3.15) BS03 LEU ? GO:0003677 ... Q834K5 37326020
    779342 8c7u:C (3.15) BS01 dna ? GO:0003677 ... Q834K5 37326020
    779343 8c7u:C (3.15) BS02 dna ? GO:0003677 ... Q834K5 37326020
    779344 8c7u:D (3.15) BS01 dna ? GO:0003677 ... Q834K5 37326020
    779345 8c7u:D (3.15) BS02 dna ? GO:0003677 ... Q834K5 37326020
    779346 8c7w:A (2.26) BS01 U0C 2.7.11.30 GO:0004672 ... Q04771 38498998
    779347 8c7x:A (1.65) BS01 TXV 2.7.11.1 GO:0004672 ... P15056 36878151
    779348 8c7x:B (1.65) BS01 TXV 2.7.11.1 GO:0004672 ... P15056 36878151
    779349 8c7y:A (1.65) BS01 TXV 2.7.11.1 GO:0004672 ... P15056 36878151
    779350 8c7y:B (1.65) BS01 TXV 2.7.11.1 GO:0004672 ... P15056 36878151
    779351 8c7z:A (2.23) BS01 TZX 2.7.11.30 GO:0004672 ... Q04771 38498998
    779352 8c80:A (3.4) BS01 Z8A ? GO:0003674 ... P53224 37794019
    779353 8c80:C (3.4) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 37794019
    779354 8c81:A (3.3) BS01 Z8A ? GO:0003674 ... P53224 37794019
    779355 8c81:C (3.3) BS01 Z8A 2.3.1.50 GO:0004758 ... P40970 37794019
    779356 8c81:C (3.3) BS02 PLP 2.3.1.50 GO:0004758 ... P40970 37794019
    779357 8c82:A (3.4) BS01 Z8A ? GO:0003674 ... P53224 37794019
    779358 8c82:C (3.4) BS01 Z8A 2.3.1.50 GO:0004758 ... P40970 37794019
    779359 8c82:C (3.4) BS02 PLP 2.3.1.50 GO:0004758 ... P40970 37794019
    779360 8c82:C (3.4) BS03 Q7G 2.3.1.50 GO:0004758 ... P40970 37794019
    779361 8c82:E (3.4) BS01 Z8A ? GO:0003674 ... P53224 37794019
    779362 8c82:E (3.4) BS02 Q7G ? GO:0003674 ... P53224 37794019
    779363 8c82:G (3.4) BS01 Z8A 2.3.1.50 GO:0004758 ... P40970 37794019
    779364 8c82:G (3.4) BS02 Q7G 2.3.1.50 GO:0004758 ... P40970 37794019
    779365 8c82:G (3.4) BS03 PLP 2.3.1.50 GO:0004758 ... P40970 37794019
    779366 8c83:R (3.0) BS01 rna ? GO:0000054 ... P25443 37169754
    779367 8c83:S (3.0) BS01 rna ? GO:0002181 ... P0CX35 37169754
    779368 8c83:T (3.0) BS01 rna ? GO:0000462 ... P0CX37 37169754
    779369 8c83:U (3.0) BS01 rna ? GO:0002181 ... P26786 37169754
    779370 8c83:V (3.0) BS01 rna ? GO:0000462 ... P0CX40 37169754
    779371 8c83:W (3.0) BS01 rna ? GO:0000462 ... O13516 37169754
    779372 8c83:X (3.0) BS01 rna ? GO:0000028 ... P0CX47 37169754
    779373 8c83:Y (3.0) BS01 rna ? GO:0000462 ... P05756 37169754
    779374 8c83:a (3.0) BS01 rna ? GO:0000447 ... P0C0V8 37169754
    779375 8c83:b (3.0) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    779376 8c83:c (3.0) BS01 rna ? GO:0000462 ... P0CX29 37169754
    779377 8c83:d (3.0) BS01 rna ? GO:0000462 ... P0CX31 37169754
    779378 8c83:f (3.0) BS01 rna ? GO:0000028 ... P35997 37169754
    779379 8c83:g (3.0) BS01 rna ? GO:0002181 ... P0CX33 37169754
    779380 8c83:x (3.0) BS01 rna ? GO:0003674 ... P38747 37169754
    779381 8c84:A (1.9) BS01 dna ? GO:0000977 ... Q14814 38492719
    779382 8c84:A (1.9) BS02 dna ? GO:0000977 ... Q14814 38492719
    779383 8c84:B (1.9) BS01 dna ? GO:0000977 ... Q14814 38492719
    779384 8c84:B (1.9) BS02 dna ? GO:0000977 ... Q14814 38492719
    779385 8c85:A (1.19) BS01 U1F ? GO:0001523 ... P02766 38203650
    779386 8c85:B (1.19) BS01 U1F ? GO:0001523 ... P02766 38203650
    779387 8c86:A (1.1) BS01 TQ0 ? GO:0001523 ... P02766 38203650
    779388 8c86:B (1.1) BS01 TQ0 ? GO:0001523 ... P02766 38203650
    779389 8c87:L (2.45) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    779390 8c87:L (2.45) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    779391 8c87:L (2.45) BS03 BCL ? GO:0009772 ... Q3J1A5 36837657
    779392 8c87:L (2.45) BS04 BPH ? GO:0009772 ... Q3J1A5 36837657
    779393 8c87:L (2.45) BS05 BPH ? GO:0009772 ... Q3J1A5 36837657
    779394 8c87:L (2.45) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    779395 8c87:M (2.45) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    779396 8c87:M (2.45) BS02 BCL ? GO:0009772 ... Q3J1A6 36837657
    779397 8c87:M (2.45) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    779398 8c87:M (2.45) BS04 BPH ? GO:0009772 ... Q3J1A6 36837657
    779399 8c87:M (2.45) BS05 BCL ? GO:0009772 ... Q3J1A6 36837657
    779400 8c87:M (2.45) BS06 BPH ? GO:0009772 ... Q3J1A6 36837657

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).