SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    779401 8c87:M (2.45) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    779402 8c87:M (2.45) BS08 U10 ? GO:0009772 ... Q3J1A6 36837657
    779403 8c87:M (2.45) BS09 SPN ? GO:0009772 ... Q3J1A6 36837657
    779404 8c88:H (2.75) BS01 NKP ? GO:0015979 ... Q3J170 36837657
    779405 8c88:L (2.75) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    779406 8c88:L (2.75) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    779407 8c88:L (2.75) BS03 BPH ? GO:0009772 ... Q3J1A5 36837657
    779408 8c88:L (2.75) BS04 BCL ? GO:0009772 ... Q3J1A5 36837657
    779409 8c88:L (2.75) BS05 BPH ? GO:0009772 ... Q3J1A5 36837657
    779410 8c88:L (2.75) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    779411 8c88:L (2.75) BS07 U10 ? GO:0009772 ... Q3J1A5 36837657
    779412 8c88:M (2.75) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    779413 8c88:M (2.75) BS02 BPH ? GO:0009772 ... Q3J1A6 36837657
    779414 8c88:M (2.75) BS03 NKP ? GO:0009772 ... Q3J1A6 36837657
    779415 8c88:M (2.75) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    779416 8c88:M (2.75) BS05 BCL ? GO:0009772 ... Q3J1A6 36837657
    779417 8c88:M (2.75) BS06 BPH ? GO:0009772 ... Q3J1A6 36837657
    779418 8c88:M (2.75) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    779419 8c88:M (2.75) BS08 U10 ? GO:0009772 ... Q3J1A6 36837657
    779420 8c88:M (2.75) BS09 SPN ? GO:0009772 ... Q3J1A6 36837657
    779421 8c8b:A (1.46) BS01 U1L 3.5.2.6 N/A Q6PJP8 38817593
    779422 8c8b:A (1.46) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779423 8c8b:A (1.46) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779424 8c8c:A (2.096) BS01 U1U 2.7.1.149 GO:0001750 ... P48426 37252102
    779425 8c8d:A (1.46) BS01 U2C 3.5.2.6 N/A Q6PJP8 38817593
    779426 8c8d:A (1.46) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779427 8c8d:A (1.46) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779428 8c8h:A (3.84) BS01 MG 2.7.7.6 GO:0000428 ... P07392 N/A
    779429 8c8h:A (3.84) BS02 ZN 2.7.7.6 GO:0000428 ... P07392 N/A
    779430 8c8h:A (3.84) BS03 ZN 2.7.7.6 GO:0000428 ... P07392 N/A
    779431 8c8h:B (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... Q76ZP7 N/A
    779432 8c8h:I (3.84) BS01 rna ? GO:0003700 ... P68438 N/A
    779433 8c8h:I (3.84) BS02 ZN ? GO:0003700 ... P68438 N/A
    779434 8c8h:K (3.84) BS01 rna ? GO:0003677 ... P20636 N/A
    779435 8c8h:Y (3.84) BS01 rna 3.6.1.15 GO:0003677 ... P05807 N/A
    779436 8c8j:A (2.1) BS01 dna 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    779437 8c8j:A (2.1) BS02 rna 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    779438 8c8j:A (2.1) BS03 TTP 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    779439 8c8j:A (2.1) BS04 MG 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    779440 8c8j:A (2.1) BS05 MG 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    779441 8c8q:A (3.36) BS01 HEA 7.1.1.9 GO:0004129 ... P07657 36797353
    779442 8c8q:A (3.36) BS02 HEA 7.1.1.9 GO:0004129 ... P07657 36797353
    779443 8c8q:A (3.36) BS03 CU 7.1.1.9 GO:0004129 ... P07657 36797353
    779444 8c8q:A (3.36) BS04 MG 7.1.1.9 GO:0004129 ... P07657 36797353
    779445 8c8q:A (3.36) BS05 CA 7.1.1.9 GO:0004129 ... P07657 36797353
    779446 8c8q:B (3.36) BS01 CUA 7.1.1.9 GO:0004129 ... P21534 36797353
    779447 8c8q:D (3.36) BS01 ZN ? GO:0004129 ... P79010 36797353
    779448 8c8q:J (3.36) BS01 peptide ? GO:0004129 ... O94581 36797353
    779449 8c8s:A (1.8) BS01 U2O 3.5.2.6 N/A Q6PJP8 38817593
    779450 8c8s:A (1.8) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779451 8c8s:A (1.8) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    779452 8c8u:A (1.901) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779453 8c8u:A (1.901) BS02 MRC 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779454 8c8u:A (1.901) BS03 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779455 8c8v:A (2.2) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779456 8c8v:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779457 8c8v:A (2.2) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779458 8c8w:A (2.29) BS01 ILA 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779459 8c8w:A (2.29) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779460 8c8w:A (2.29) BS03 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779461 8c8x:0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779462 8c8x:1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 36797249
    779463 8c8x:2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779464 8c8x:3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 36797249
    779465 8c8x:C (3.93) BS01 rna ? GO:0000027 ... P60422 36797249
    779466 8c8x:D (3.93) BS01 rna ? GO:0000027 ... P60438 36797249
    779467 8c8x:E (3.93) BS01 rna ? GO:0001070 ... P60723 36797249
    779468 8c8x:F (3.93) BS01 rna ? GO:0000027 ... P62399 36797249
    779469 8c8x:F (3.93) BS02 rna ? GO:0000027 ... P62399 36797249
    779470 8c8x:H (3.93) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    779471 8c8x:J (3.93) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779472 8c8x:K (3.93) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779473 8c8x:L (3.93) BS01 rna ? GO:0002181 ... P02413 36797249
    779474 8c8x:M (3.93) BS01 rna ? GO:0000027 ... P0ADY7 36797249
    779475 8c8x:M (3.93) BS02 rna ? GO:0000027 ... P0ADY7 36797249
    779476 8c8x:N (3.93) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779477 8c8x:O (3.93) BS01 rna ? GO:0002181 ... P0C018 36797249
    779478 8c8x:O (3.93) BS02 rna ? GO:0002181 ... P0C018 36797249
    779479 8c8x:P (3.93) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779480 8c8x:Q (3.93) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779481 8c8x:R (3.93) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779482 8c8x:S (3.93) BS01 rna ? GO:0002181 ... P61175 36797249
    779483 8c8x:T (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779484 8c8x:U (3.93) BS01 rna ? GO:0000027 ... P60624 36797249
    779485 8c8x:V (3.93) BS01 rna ? GO:0000027 ... P68919 36797249
    779486 8c8x:V (3.93) BS02 rna ? GO:0000027 ... P68919 36797249
    779487 8c8x:W (3.93) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    779488 8c8x:W (3.93) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    779489 8c8x:X (3.93) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    779490 8c8x:Y (3.93) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779491 8c8x:Z (3.93) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779492 8c8y:0 (3.03) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779493 8c8y:2 (3.03) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779494 8c8y:C (3.03) BS01 rna ? GO:0000027 ... P60422 36797249
    779495 8c8y:D (3.03) BS01 rna ? GO:0000027 ... P60438 36797249
    779496 8c8y:E (3.03) BS01 rna ? GO:0001070 ... P60723 36797249
    779497 8c8y:F (3.03) BS01 rna ? GO:0000027 ... P62399 36797249
    779498 8c8y:F (3.03) BS02 rna ? GO:0000027 ... P62399 36797249
    779499 8c8y:H (3.03) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    779500 8c8y:J (3.03) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779501 8c8y:K (3.03) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779502 8c8y:L (3.03) BS01 rna ? GO:0002181 ... P02413 36797249
    779503 8c8y:N (3.03) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779504 8c8y:O (3.03) BS01 rna ? GO:0002181 ... P0C018 36797249
    779505 8c8y:O (3.03) BS02 rna ? GO:0002181 ... P0C018 36797249
    779506 8c8y:P (3.03) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779507 8c8y:Q (3.03) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779508 8c8y:R (3.03) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779509 8c8y:S (3.03) BS01 rna ? GO:0002181 ... P61175 36797249
    779510 8c8y:T (3.03) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779511 8c8y:U (3.03) BS01 rna ? GO:0000027 ... P60624 36797249
    779512 8c8y:V (3.03) BS01 rna ? GO:0000027 ... P68919 36797249
    779513 8c8y:W (3.03) BS01 rna ? GO:0003735 ... P0A7L8 36797249
    779514 8c8y:W (3.03) BS02 rna ? GO:0003735 ... P0A7L8 36797249
    779515 8c8y:X (3.03) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    779516 8c8y:Y (3.03) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779517 8c8y:Z (3.03) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779518 8c8y:Z (3.03) BS02 rna ? GO:0000027 ... P0AG51 36797249
    779519 8c8z:0 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779520 8c8z:2 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779521 8c8z:D (3.12) BS01 rna ? GO:0000027 ... P60438 36797249
    779522 8c8z:E (3.12) BS01 rna ? GO:0001070 ... P60723 36797249
    779523 8c8z:F (3.12) BS01 rna ? GO:0000027 ... P62399 36797249
    779524 8c8z:F (3.12) BS02 rna ? GO:0000027 ... P62399 36797249
    779525 8c8z:H (3.12) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    779526 8c8z:J (3.12) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779527 8c8z:K (3.12) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779528 8c8z:L (3.12) BS01 rna ? GO:0002181 ... P02413 36797249
    779529 8c8z:N (3.12) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779530 8c8z:O (3.12) BS01 rna ? GO:0002181 ... P0C018 36797249
    779531 8c8z:O (3.12) BS02 rna ? GO:0002181 ... P0C018 36797249
    779532 8c8z:P (3.12) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779533 8c8z:Q (3.12) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779534 8c8z:R (3.12) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779535 8c8z:S (3.12) BS01 rna ? GO:0002181 ... P61175 36797249
    779536 8c8z:T (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779537 8c8z:U (3.12) BS01 rna ? GO:0000027 ... P60624 36797249
    779538 8c8z:V (3.12) BS01 rna ? GO:0000027 ... P68919 36797249
    779539 8c8z:W (3.12) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    779540 8c8z:W (3.12) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    779541 8c8z:X (3.12) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    779542 8c8z:Y (3.12) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779543 8c8z:Z (3.12) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779544 8c8z:Z (3.12) BS02 rna ? GO:0000027 ... P0AG51 36797249
    779545 8c90:0 (3.15) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779546 8c90:2 (3.15) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779547 8c90:D (3.15) BS01 rna ? GO:0000027 ... P60438 36797249
    779548 8c90:E (3.15) BS01 rna ? GO:0001070 ... P60723 36797249
    779549 8c90:F (3.15) BS01 rna ? GO:0000027 ... P62399 36797249
    779550 8c90:F (3.15) BS02 rna ? GO:0000027 ... P62399 36797249
    779551 8c90:J (3.15) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779552 8c90:K (3.15) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779553 8c90:L (3.15) BS01 rna ? GO:0002181 ... P02413 36797249
    779554 8c90:N (3.15) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779555 8c90:O (3.15) BS01 rna ? GO:0002181 ... P0C018 36797249
    779556 8c90:O (3.15) BS02 rna ? GO:0002181 ... P0C018 36797249
    779557 8c90:P (3.15) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779558 8c90:Q (3.15) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779559 8c90:R (3.15) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779560 8c90:S (3.15) BS01 rna ? GO:0002181 ... P61175 36797249
    779561 8c90:T (3.15) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779562 8c90:U (3.15) BS01 rna ? GO:0000027 ... P60624 36797249
    779563 8c90:V (3.15) BS01 rna ? GO:0000027 ... P68919 36797249
    779564 8c90:W (3.15) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    779565 8c90:W (3.15) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    779566 8c90:Y (3.15) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779567 8c90:Z (3.15) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779568 8c91:0 (4.19) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779569 8c91:2 (4.19) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779570 8c91:C (4.19) BS01 rna ? GO:0000027 ... P60422 36797249
    779571 8c91:D (4.19) BS01 rna ? GO:0000027 ... P60438 36797249
    779572 8c91:E (4.19) BS01 rna ? GO:0001070 ... P60723 36797249
    779573 8c91:J (4.19) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779574 8c91:K (4.19) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779575 8c91:L (4.19) BS01 rna ? GO:0002181 ... P02413 36797249
    779576 8c91:N (4.19) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779577 8c91:P (4.19) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779578 8c91:Q (4.19) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779579 8c91:R (4.19) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779580 8c91:S (4.19) BS01 rna ? GO:0002181 ... P61175 36797249
    779581 8c91:T (4.19) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779582 8c91:U (4.19) BS01 rna ? GO:0000027 ... P60624 36797249
    779583 8c91:Y (4.19) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779584 8c91:Z (4.19) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779585 8c92:0 (3.79) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779586 8c92:2 (3.79) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779587 8c92:D (3.79) BS01 rna ? GO:0000027 ... P60438 36797249
    779588 8c92:E (3.79) BS01 rna ? GO:0001070 ... P60723 36797249
    779589 8c92:J (3.79) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779590 8c92:K (3.79) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779591 8c92:L (3.79) BS01 rna ? GO:0002181 ... P02413 36797249
    779592 8c92:N (3.79) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779593 8c92:P (3.79) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779594 8c92:Q (3.79) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779595 8c92:R (3.79) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779596 8c92:S (3.79) BS01 rna ? GO:0002181 ... P61175 36797249
    779597 8c92:T (3.79) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779598 8c92:U (3.79) BS01 rna ? GO:0000027 ... P60624 36797249
    779599 8c92:Y (3.79) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779600 8c92:Z (3.79) BS01 rna ? GO:0000027 ... P0AG51 36797249

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).