SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    779601 8c93:0 (4.17) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779602 8c93:2 (4.17) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779603 8c93:D (4.17) BS01 rna ? GO:0000027 ... P60438 36797249
    779604 8c93:E (4.17) BS01 rna ? GO:0001070 ... P60723 36797249
    779605 8c93:J (4.17) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779606 8c93:K (4.17) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779607 8c93:L (4.17) BS01 rna ? GO:0002181 ... P02413 36797249
    779608 8c93:N (4.17) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779609 8c93:P (4.17) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779610 8c93:Q (4.17) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779611 8c93:R (4.17) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779612 8c93:S (4.17) BS01 rna ? GO:0002181 ... P61175 36797249
    779613 8c93:T (4.17) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779614 8c93:U (4.17) BS01 rna ? GO:0000027 ... P60624 36797249
    779615 8c93:Y (4.17) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779616 8c93:Z (4.17) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779617 8c94:0 (3.8) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779618 8c94:2 (3.8) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779619 8c94:D (3.8) BS01 rna ? GO:0000027 ... P60438 36797249
    779620 8c94:E (3.8) BS01 rna ? GO:0001070 ... P60723 36797249
    779621 8c94:F (3.8) BS01 rna ? GO:0000027 ... P62399 36797249
    779622 8c94:F (3.8) BS02 rna ? GO:0000027 ... P62399 36797249
    779623 8c94:J (3.8) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779624 8c94:K (3.8) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779625 8c94:L (3.8) BS01 rna ? GO:0002181 ... P02413 36797249
    779626 8c94:N (3.8) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779627 8c94:O (3.8) BS01 rna ? GO:0002181 ... P0C018 36797249
    779628 8c94:O (3.8) BS02 rna ? GO:0002181 ... P0C018 36797249
    779629 8c94:P (3.8) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779630 8c94:Q (3.8) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779631 8c94:R (3.8) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779632 8c94:S (3.8) BS01 rna ? GO:0002181 ... P61175 36797249
    779633 8c94:U (3.8) BS01 rna ? GO:0000027 ... P60624 36797249
    779634 8c94:V (3.8) BS01 rna ? GO:0000027 ... P68919 36797249
    779635 8c94:W (3.8) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    779636 8c94:W (3.8) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    779637 8c94:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779638 8c94:Z (3.8) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779639 8c94:Z (3.8) BS02 rna ? GO:0000027 ... P0AG51 36797249
    779640 8c95:2 (4.92) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779641 8c95:E (4.92) BS01 rna ? GO:0001070 ... P60723 36797249
    779642 8c95:F (4.92) BS01 rna ? GO:0000027 ... P62399 36797249
    779643 8c95:F (4.92) BS02 rna ? GO:0000027 ... P62399 36797249
    779644 8c95:J (4.92) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779645 8c95:L (4.92) BS01 rna ? GO:0002181 ... P02413 36797249
    779646 8c95:O (4.92) BS01 rna ? GO:0002181 ... P0C018 36797249
    779647 8c95:O (4.92) BS02 rna ? GO:0002181 ... P0C018 36797249
    779648 8c95:Q (4.92) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779649 8c95:R (4.92) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779650 8c95:S (4.92) BS01 rna ? GO:0002181 ... P61175 36797249
    779651 8c95:U (4.92) BS01 rna ? GO:0000027 ... P60624 36797249
    779652 8c95:V (4.92) BS01 rna ? GO:0000027 ... P68919 36797249
    779653 8c95:W (4.92) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    779654 8c95:W (4.92) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    779655 8c95:Y (4.92) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779656 8c95:Z (4.92) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779657 8c95:Z (4.92) BS02 rna ? GO:0000027 ... P0AG51 36797249
    779658 8c96:0 (4.43) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779659 8c96:2 (4.43) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779660 8c96:D (4.43) BS01 rna ? GO:0000027 ... P60438 36797249
    779661 8c96:E (4.43) BS01 rna ? GO:0001070 ... P60723 36797249
    779662 8c96:J (4.43) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779663 8c96:K (4.43) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779664 8c96:L (4.43) BS01 rna ? GO:0002181 ... P02413 36797249
    779665 8c96:N (4.43) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779666 8c96:P (4.43) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779667 8c96:Q (4.43) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779668 8c96:R (4.43) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779669 8c96:S (4.43) BS01 rna ? GO:0002181 ... P61175 36797249
    779670 8c96:U (4.43) BS01 rna ? GO:0000027 ... P60624 36797249
    779671 8c96:Y (4.43) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779672 8c96:Z (4.43) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779673 8c97:0 (4.07) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    779674 8c97:2 (4.07) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779675 8c97:D (4.07) BS01 rna ? GO:0000027 ... P60438 36797249
    779676 8c97:E (4.07) BS01 rna ? GO:0001070 ... P60723 36797249
    779677 8c97:K (4.07) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    779678 8c97:N (4.07) BS01 rna ? GO:0000027 ... P0AG44 36797249
    779679 8c97:P (4.07) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    779680 8c97:S (4.07) BS01 rna ? GO:0002181 ... P61175 36797249
    779681 8c97:T (4.07) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779682 8c97:U (4.07) BS01 rna ? GO:0000027 ... P60624 36797249
    779683 8c97:Y (4.07) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779684 8c98:2 (3.66) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779685 8c98:E (3.66) BS01 rna ? GO:0001070 ... P60723 36797249
    779686 8c98:J (3.66) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779687 8c98:L (3.66) BS01 rna ? GO:0002181 ... P02413 36797249
    779688 8c98:Q (3.66) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779689 8c98:R (3.66) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779690 8c98:S (3.66) BS01 rna ? GO:0002181 ... P61175 36797249
    779691 8c98:T (3.66) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779692 8c98:U (3.66) BS01 rna ? GO:0000027 ... P60624 36797249
    779693 8c98:Y (3.66) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779694 8c98:Z (3.66) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779695 8c99:2 (3.29) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779696 8c99:E (3.29) BS01 rna ? GO:0001070 ... P60723 36797249
    779697 8c99:J (3.29) BS01 rna ? GO:0002181 ... P0AA10 36797249
    779698 8c99:L (3.29) BS01 rna ? GO:0002181 ... P02413 36797249
    779699 8c99:Q (3.29) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    779700 8c99:R (3.29) BS01 rna ? GO:0002181 ... P0AG48 36797249
    779701 8c99:S (3.29) BS01 rna ? GO:0002181 ... P61175 36797249
    779702 8c99:U (3.29) BS01 rna ? GO:0000027 ... P60624 36797249
    779703 8c99:Y (3.29) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779704 8c99:Z (3.29) BS01 rna ? GO:0000027 ... P0AG51 36797249
    779705 8c9a:2 (4.86) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779706 8c9a:E (4.86) BS01 rna ? GO:0001070 ... P60723 36797249
    779707 8c9a:S (4.86) BS01 rna ? GO:0002181 ... P61175 36797249
    779708 8c9a:T (4.86) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    779709 8c9a:U (4.86) BS01 rna ? GO:0000027 ... P60624 36797249
    779710 8c9a:Y (4.86) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779711 8c9b:2 (5.9) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    779712 8c9b:E (5.9) BS01 rna ? GO:0001070 ... P60723 36797249
    779713 8c9b:S (5.9) BS01 rna ? GO:0002181 ... P61175 36797249
    779714 8c9b:U (5.9) BS01 rna ? GO:0000027 ... P60624 36797249
    779715 8c9b:Y (5.9) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779716 8c9c:S (6.62) BS01 rna ? GO:0002181 ... P61175 36797249
    779717 8c9c:U (6.62) BS01 rna ? GO:0000027 ... P60624 36797249
    779718 8c9c:Y (6.62) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    779719 8c9d:A (2.3) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779720 8c9d:A (2.3) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779721 8c9d:A (2.3) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    779722 8c9e:A (2.9) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779723 8c9e:A (2.9) BS02 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779724 8c9e:A (2.9) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779725 8c9f:A (3.1) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779726 8c9f:A (3.1) BS02 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779727 8c9f:A (3.1) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779728 8c9g:A (2.8) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779729 8c9g:A (2.8) BS02 MRC 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779730 8c9g:B (2.8) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779731 8c9g:B (2.8) BS02 MRC 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    779732 8c9h:A (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779733 8c9h:B (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779734 8c9h:C (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779735 8c9h:D (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779736 8c9h:E (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779737 8c9h:F (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779738 8c9h:G (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779739 8c9h:H (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    779740 8c9i:A (2.05) BS01 HEB 1.14.-.- GO:0004497 ... P9WPL7 N/A
    779741 8c9j:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    779742 8c9j:B (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    779743 8c9j:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    779744 8c9j:D (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    779745 8c9o:AAA (1.69) BS01 O6K 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    779746 8c9o:BBB (1.69) BS01 O6K 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    779747 8c9q:AAA (1.86) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    779748 8c9q:BBB (1.86) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    779749 8c9s:A (1.8) BS01 SAH ? GO:0008168 ... Q82B68 36942619
    779750 8c9s:A (1.8) BS02 MG ? GO:0008168 ... Q82B68 36942619
    779751 8c9s:A (1.8) BS03 BAQ ? GO:0008168 ... Q82B68 36942619
    779752 8c9s:B (1.8) BS01 MG ? GO:0008168 ... Q82B68 36942619
    779753 8c9s:B (1.8) BS02 SAH ? GO:0008168 ... Q82B68 36942619
    779754 8c9s:B (1.8) BS03 BAQ ? GO:0008168 ... Q82B68 36942619
    779755 8c9u:AAA (1.75) BS01 4WI N/A GO:0008233 ... P0DTD1 N/A
    779756 8c9v:A (1.5) BS01 MG ? GO:0008168 ... Q1JXV1 36942619
    779757 8c9w:A (2.114) BS01 U30 ? GO:0001609 ... P0ABE7
    P29274
    37264098
    779758 8c9w:A (2.114) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    779759 8c9w:A (2.114) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    779760 8c9w:A (2.114) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    779761 8c9y:A (1.18) BS01 EVB ? GO:0030246 ... A0A0S4TLR1 37314405
    779762 8c9y:A (1.18) BS02 EVB ? GO:0030246 ... A0A0S4TLR1 37314405
    779763 8c9y:A (1.18) BS03 BDF ? GO:0030246 ... A0A0S4TLR1 37314405
    779764 8c9y:A (1.18) BS04 BDF ? GO:0030246 ... A0A0S4TLR1 37314405
    779765 8c9z:A (1.18) BS01 BDF ? GO:0030246 ... A0A0S4TLR1 37314405
    779766 8c9z:A (1.18) BS02 BDF ? GO:0030246 ... A0A0S4TLR1 37314405
    779767 8c9z:A (1.18) BS03 EVB ? GO:0030246 ... A0A0S4TLR1 37314405
    779768 8c9z:A (1.18) BS04 EVB ? GO:0030246 ... A0A0S4TLR1 37314405
    779769 8ca0:A (-1.00) BS01 VIU 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 N/A
    779770 8ca1:A (4.3) BS01 FAD 1.3.8.9 GO:0001659 ... P50544 38177503
    779771 8ca1:A (4.3) BS02 FAD 1.3.8.9 GO:0001659 ... P50544 38177503
    779772 8ca1:B (4.3) BS01 FAD 1.3.8.9 GO:0001659 ... P50544 38177503
    779773 8ca1:B (4.3) BS02 FAD 1.3.8.9 GO:0001659 ... P50544 38177503
    779774 8ca2:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1932029
    779775 8ca3:B (3.2) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38177503
    779776 8ca3:D (3.2) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    779777 8ca3:D (3.2) BS02 UQ9 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    779778 8ca3:E (3.2) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38177503
    779779 8ca3:F (3.2) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779780 8ca3:F (3.2) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779781 8ca3:G (3.2) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779782 8ca3:G (3.2) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779783 8ca3:G (3.2) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779784 8ca3:H (3.2) BS01 UQ9 7.1.1.2 GO:0001666 ... P03888 38177503
    779785 8ca3:I (3.2) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    779786 8ca3:I (3.2) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    779787 8ca3:O (3.2) BS01 GTP ? GO:0005739 ... Q99LC3 38177503
    779788 8ca3:P (3.2) BS01 NDP ? GO:0003954 ... Q9DC69 38177503
    779789 8ca3:R (3.2) BS01 ZN ? GO:0001822 ... P52503 38177503
    779790 8ca3:T (3.2) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    779791 8ca3:W (3.2) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    779792 8ca3:n (3.2) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    779793 8ca4:E (3.25) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38177503
    779794 8ca4:F (3.25) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779795 8ca4:F (3.25) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779796 8ca4:G (3.25) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779797 8ca4:G (3.25) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779798 8ca4:G (3.25) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779799 8ca5:B (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38177503
    779800 8ca5:B (3.9) BS02 UQ9 7.1.1.2 GO:0003954 ... Q9DC70 38177503

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).