SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    779801 8ca5:D (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    779802 8ca5:E (3.9) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38177503
    779803 8ca5:F (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779804 8ca5:F (3.9) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    779805 8ca5:G (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779806 8ca5:G (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779807 8ca5:G (3.9) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    779808 8ca5:H (3.9) BS01 UQ9 7.1.1.2 GO:0001666 ... P03888 38177503
    779809 8ca5:I (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    779810 8ca5:I (3.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    779811 8ca5:O (3.9) BS01 GTP ? GO:0005739 ... Q99LC3 38177503
    779812 8ca5:P (3.9) BS01 NDP ? GO:0003954 ... Q9DC69 38177503
    779813 8ca5:T (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    779814 8ca5:U (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    779815 8ca5:W (3.9) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    779816 8ca5:n (3.9) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    779817 8ca7:C (2.06) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    779818 8ca7:E (2.06) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    779819 8ca7:G (2.06) BS01 rna ? GO:0000028 ... P02359 37550453
    779820 8ca7:I (2.06) BS01 rna ? GO:0000049 ... P0A7X3 37550453
    779821 8ca7:J (2.06) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    779822 8ca7:M (2.06) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    779823 8ca7:M (2.06) BS02 MG ? GO:0000049 ... P0A7S9 37550453
    779824 8ca7:N (2.06) BS01 rna ? GO:0000028 ... P0AG59 37550453
    779825 8ca7:S (2.06) BS01 rna ? GO:0000028 ... P0A7U3 37550453
    779826 8ca9:A (2.29) BS01 MAN ? N/A Q24995 37729416
    779827 8ca9:A (2.29) BS02 CU ? N/A Q24995 37729416
    779828 8ca9:B (2.29) BS01 MAN ? N/A Q24995 37729416
    779829 8ca9:B (2.29) BS02 CU ? N/A Q24995 37729416
    779830 8ca9:C (2.29) BS01 MAN ? N/A Q24995 37729416
    779831 8ca9:C (2.29) BS02 CU ? N/A Q24995 37729416
    779832 8ca9:D (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    779833 8ca9:E (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    779834 8ca9:F (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    779835 8caa:A (1.999) BS01 U3F ? N/A Q15561 36988034
    779836 8caa:A (1.999) BS02 U3O ? N/A Q15561 36988034
    779837 8caa:B (1.999) BS01 U3F ? N/A Q15561 36988034
    779838 8caa:B (1.999) BS02 U3O ? N/A Q15561 36988034
    779839 8cac:AAA (2.13) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    779840 8cac:BBB (2.13) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    779841 8cad:A (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779842 8cad:A (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779843 8cad:A (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779844 8cad:B (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779845 8cad:B (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779846 8cad:B (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779847 8cad:C (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779848 8cad:C (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779849 8cad:C (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779850 8cad:D (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779851 8cad:D (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779852 8cad:D (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779853 8cad:E (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779854 8cad:E (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779855 8cad:E (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779856 8cad:F (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    779857 8cad:F (2.85) BS02 CU ? N/A A0A6J1WN20 37729416
    779858 8cad:F (2.85) BS03 CU ? N/A A0A6J1WN20 37729416
    779859 8cah:A (3.0) BS01 rna ? GO:0000054 ... P05750 37169754
    779860 8cah:B (3.0) BS01 rna ? GO:0000028 ... P26783 37169754
    779861 8cah:B (3.0) BS02 MG ? GO:0000028 ... P26783 37169754
    779862 8cah:C (3.0) BS01 rna ? GO:0000054 ... Q08745 37169754
    779863 8cah:D (3.0) BS01 rna ? GO:0000028 ... P48589 37169754
    779864 8cah:E (3.0) BS01 rna ? GO:0000028 ... Q01855 37169754
    779865 8cah:F (3.0) BS01 rna ? GO:0000462 ... P0CX51 37169754
    779866 8cah:G (3.0) BS01 rna ? GO:0003674 ... P38747 37169754
    779867 8cah:H (3.0) BS01 rna ? GO:0000028 ... P02407 37169754
    779868 8cah:I (3.0) BS01 rna ? GO:0000054 ... P0CX55 37169754
    779869 8cah:J (3.0) BS01 rna ? GO:0000028 ... P07280 37169754
    779870 8cah:K (3.0) BS01 rna ? GO:0000462 ... P38701 37169754
    779871 8cah:L (3.0) BS01 rna ? GO:0002181 ... Q3E792 37169754
    779872 8cah:M (3.0) BS01 rna ? GO:0002181 ... P41057 37169754
    779873 8cah:M (3.0) BS02 ZN ? GO:0002181 ... P41057 37169754
    779874 8cah:N (3.0) BS01 rna ? GO:0003735 ... P05759 37169754
    779875 8cah:O (3.0) BS01 rna ? GO:0001965 ... P38011 37169754
    779876 8cah:P (3.0) BS01 rna ? GO:0000028 ... P32905 37169754
    779877 8cah:Q (3.0) BS01 rna ? GO:0000462 ... P33442 37169754
    779878 8cah:R (3.0) BS01 rna ? GO:0000054 ... P25443 37169754
    779879 8cah:S (3.0) BS01 rna ? GO:0002181 ... P0CX36 37169754
    779880 8cah:S (3.0) BS02 MG ? GO:0002181 ... P0CX36 37169754
    779881 8cah:T (3.0) BS01 rna ? GO:0000462 ... P0CX38 37169754
    779882 8cah:U (3.0) BS01 rna ? GO:0002181 ... P26786 37169754
    779883 8cah:V (3.0) BS01 rna ? GO:0000462 ... P0CX39 37169754
    779884 8cah:W (3.0) BS01 rna ? GO:0000462 ... O13516 37169754
    779885 8cah:X (3.0) BS01 rna ? GO:0000028 ... P0CX47 37169754
    779886 8cah:Y (3.0) BS01 rna ? GO:0000462 ... P05756 37169754
    779887 8cah:Z (3.0) BS01 rna ? GO:0000028 ... P06367 37169754
    779888 8cah:a (3.0) BS01 rna ? GO:0000447 ... P0C0V8 37169754
    779889 8cah:b (3.0) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    779890 8cah:c (3.0) BS01 rna ? GO:0000462 ... P0CX29 37169754
    779891 8cah:d (3.0) BS01 rna ? GO:0000462 ... P0CX31 37169754
    779892 8cah:e (3.0) BS01 rna ? GO:0000054 ... P39938 37169754
    779893 8cah:f (3.0) BS01 rna ? GO:0000028 ... P35997 37169754
    779894 8cah:g (3.0) BS01 rna ? GO:0002181 ... P0CX33 37169754
    779895 8cah:h (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 37169754
    779896 8cah:i (3.0) BS01 rna ? GO:0001677 ... P38912 37169754
    779897 8cah:m (3.0) BS01 rna ? GO:0001731 ... P32911 37169754
    779898 8cah:p (3.0) BS01 rna ? GO:0001732 ... P06103 37169754
    779899 8cah:q (3.0) BS01 rna ? GO:0001732 ... P32497 37169754
    779900 8cah:x (3.0) BS01 rna ? GO:0000054 ... Q03195 37169754
    779901 8cah:x (3.0) BS02 SF4 ? GO:0000054 ... Q03195 37169754
    779902 8cah:x (3.0) BS03 SF4 ? GO:0000054 ... Q03195 37169754
    779903 8cah:x (3.0) BS04 ADP ? GO:0000054 ... Q03195 37169754
    779904 8cah:x (3.0) BS05 MG ? GO:0000054 ... Q03195 37169754
    779905 8cah:z (3.0) BS01 rna ? GO:0000184 ... Q05775 37169754
    779906 8cai:B (2.08) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    779907 8cai:C (2.08) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    779908 8cai:D (2.08) BS01 rna ? GO:0000028 ... P0A7V8 37550453
    779909 8cai:E (2.08) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    779910 8cai:F (2.08) BS01 rna ? GO:0002181 ... P02358 37550453
    779911 8cai:H (2.08) BS01 rna ? GO:0000028 ... P0A7W7 37550453
    779912 8cai:K (2.08) BS01 rna ? GO:0002181 ... P0A7R9 37550453
    779913 8cai:L (2.08) BS01 rna ? GO:0000049 ... P0A7S3 37550453
    779914 8cai:L (2.08) BS02 5I0 ? GO:0000049 ... P0A7S3 37550453
    779915 8cai:O (2.08) BS01 rna ? GO:0000028 ... P0ADZ4 37550453
    779916 8cai:P (2.08) BS01 rna ? GO:0000028 ... P0A7T3 37550453
    779917 8cai:Q (2.08) BS01 rna ? GO:0000028 ... P0AG63 37550453
    779918 8cai:R (2.08) BS01 rna ? GO:0002181 ... P0A7T7 37550453
    779919 8cai:T (2.08) BS01 rna ? GO:0000028 ... P0A7U7 37550453
    779920 8cai:U (2.08) BS01 rna ? GO:0000028 ... P68679 37550453
    779921 8caj:AAA (2.2) BS01 UAX N/A GO:0008233 ... P0DTD1 N/A
    779922 8cak:A (2.67) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779923 8cak:A (2.67) BS02 U4F ? GO:0016020 ... K9WT99 37884805
    779924 8cal:A (2.41) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779925 8cal:A (2.41) BS02 U45 ? GO:0016020 ... K9WT99 37884805
    779926 8cam:0 (1.86) BS01 rna ? GO:0000027 ... P0A7N9 37550453
    779927 8cam:1 (1.86) BS01 rna ? GO:0002181 ... P0A7P5 37550453
    779928 8cam:2 (1.86) BS01 rna ? GO:0002181 ... P0A7Q1 37550453
    779929 8cam:3 (1.86) BS01 rna ? GO:0002181 ... P0A7Q6 37550453
    779930 8cam:3 (1.86) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    779931 8cam:c (1.86) BS01 rna ? GO:0000027 ... P60422 37550453
    779932 8cam:c (1.86) BS02 MG ? GO:0000027 ... P60422 37550453
    779933 8cam:c (1.86) BS03 MG ? GO:0000027 ... P60422 37550453
    779934 8cam:d (1.86) BS01 rna ? GO:0000027 ... P60438 37550453
    779935 8cam:e (1.86) BS01 rna ? GO:0001070 ... P60723 37550453
    779936 8cam:g (1.86) BS01 rna ? GO:0000027 ... P0AG55 37550453
    779937 8cam:h (1.86) BS01 rna ? GO:0002181 ... P0A7R1 37550453
    779938 8cam:i (1.86) BS01 rna ? GO:0002181 ... P0AA10 37550453
    779939 8cam:j (1.86) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    779940 8cam:k (1.86) BS01 rna ? GO:0002181 ... P02413 37550453
    779941 8cam:l (1.86) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    779942 8cam:l (1.86) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    779943 8cam:l (1.86) BS03 6O1 ? GO:0000027 ... P0ADY7 37550453
    779944 8cam:m (1.86) BS01 rna ? GO:0000027 ... P0AG44 37550453
    779945 8cam:o (1.86) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    779946 8cam:p (1.86) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    779947 8cam:q (1.86) BS01 rna ? GO:0002181 ... P0AG48 37550453
    779948 8cam:r (1.86) BS01 rna ? GO:0002181 ... P61175 37550453
    779949 8cam:s (1.86) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    779950 8cam:t (1.86) BS01 rna ? GO:0000027 ... P60624 37550453
    779951 8cam:u (1.86) BS01 rna ? GO:0000027 ... P68919 37550453
    779952 8cam:v (1.86) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    779953 8cam:w (1.86) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    779954 8cam:x (1.86) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    779955 8cam:y (1.86) BS01 rna ? GO:0000027 ... P0AG51 37550453
    779956 8cam:y (1.86) BS02 rna ? GO:0000027 ... P0AG51 37550453
    779957 8cam:z (1.86) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    779958 8can:A (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779959 8can:A (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779960 8can:A (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779961 8can:A (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779962 8can:B (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779963 8can:B (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779964 8can:B (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779965 8can:B (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779966 8can:C (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779967 8can:C (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779968 8can:C (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779969 8can:C (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779970 8can:D (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779971 8can:D (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779972 8can:D (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779973 8can:D (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779974 8can:E (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779975 8can:E (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779976 8can:E (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779977 8can:E (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779978 8can:F (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    779979 8can:F (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    779980 8can:F (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    779981 8can:F (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    779982 8cao:A (2.3) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779983 8cao:A (2.3) BS02 U40 ? GO:0016020 ... K9WT99 37884805
    779984 8cap:A (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779985 8cap:A (3.0) BS02 U4O ? GO:0016020 ... K9WT99 37884805
    779986 8cap:A (3.0) BS03 FAD ? GO:0016020 ... K9WT99 37884805
    779987 8cap:B (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779988 8cap:B (3.0) BS02 U4O ? GO:0016020 ... K9WT99 37884805
    779989 8cap:B (3.0) BS03 FAD ? GO:0016020 ... K9WT99 37884805
    779990 8cap:C (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779991 8cap:C (3.0) BS02 FAD ? GO:0016020 ... K9WT99 37884805
    779992 8cap:C (3.0) BS03 U4O ? GO:0016020 ... K9WT99 37884805
    779993 8cap:E (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    779994 8cap:E (3.0) BS02 FAD ? GO:0016020 ... K9WT99 37884805
    779995 8cap:E (3.0) BS03 U4O ? GO:0016020 ... K9WT99 37884805
    779996 8cas:A (3.3) BS01 rna ? GO:0001677 ... P38912 37169754
    779997 8cas:B (3.3) BS01 rna ? GO:0000054 ... P05750 37169754
    779998 8cas:C (3.3) BS01 rna ? GO:0000028 ... P26783 37169754
    779999 8cas:C (3.3) BS02 MG ? GO:0000028 ... P26783 37169754
    780000 8cas:D (3.3) BS01 rna ? GO:0000054 ... Q08745 37169754

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).