SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    780401 8ccs:JJ (1.97) BS02 rna ? GO:0000463 ... P05737 38030725
    780402 8ccs:K (1.97) BS01 rna ? GO:0002181 ... P05743 38030725
    780403 8ccs:K (1.97) BS02 rna ? GO:0002181 ... P05743 38030725
    780404 8ccs:KK (1.97) BS01 rna ? GO:0000470 ... P17076 38030725
    780405 8ccs:KK (1.97) BS02 rna ? GO:0000470 ... P17076 38030725
    780406 8ccs:L (1.97) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    780407 8ccs:LL (1.97) BS01 rna ? GO:0002181 ... P05738 38030725
    780408 8ccs:M (1.97) BS01 rna ? GO:0002181 ... P02406 38030725
    780409 8ccs:MM (1.97) BS01 rna ? GO:0000027 ... P41805 38030725
    780410 8ccs:MM (1.97) BS02 rna ? GO:0000027 ... P41805 38030725
    780411 8ccs:MM (1.97) BS03 rna ? GO:0000027 ... P41805 38030725
    780412 8ccs:N (1.97) BS01 rna ? GO:0002181 ... P05747 38030725
    780413 8ccs:NN (1.97) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    780414 8ccs:NN (1.97) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    780415 8ccs:O (1.97) BS01 rna ? GO:0002181 ... P14120 38030725
    780416 8ccs:OO (1.97) BS01 rna ? GO:0002181 ... Q12690 38030725
    780417 8ccs:OO (1.97) BS02 rna ? GO:0002181 ... Q12690 38030725
    780418 8ccs:P (1.97) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    780419 8ccs:PP (1.97) BS01 rna ? GO:0000027 ... P36105 38030725
    780420 8ccs:Q (1.97) BS01 rna ? GO:0002181 ... P38061 38030725
    780421 8ccs:QQ (1.97) BS01 rna ? GO:0002181 ... P05748 38030725
    780422 8ccs:QQ (1.97) BS02 rna ? GO:0002181 ... P05748 38030725
    780423 8ccs:R (1.97) BS01 rna ? GO:0000027 ... P05744 38030725
    780424 8ccs:S (1.97) BS01 rna ? GO:0002181 ... P87262 38030725
    780425 8ccs:S (1.97) BS02 ZN ? GO:0002181 ... P87262 38030725
    780426 8ccs:T (1.97) BS01 rna ? GO:0000463 ... P0CX84 38030725
    780427 8ccs:T (1.97) BS02 rna ? GO:0000463 ... P0CX84 38030725
    780428 8ccs:U (1.97) BS01 rna ? GO:0002181 ... P05745 38030725
    780429 8ccs:V (1.97) BS01 rna ? GO:0000448 ... P49166 38030725
    780430 8ccs:V (1.97) BS02 rna ? GO:0000448 ... P49166 38030725
    780431 8ccs:V (1.97) BS03 ZN ? GO:0000448 ... P49166 38030725
    780432 8ccs:W (1.97) BS01 rna ? GO:0002181 ... P49167 38030725
    780433 8ccs:X (1.97) BS01 rna ? GO:0002181 ... P04650 38030725
    780434 8ccs:X (1.97) BS02 rna ? GO:0002181 ... P04650 38030725
    780435 8ccs:Y (1.97) BS01 rna ? GO:0000027 ... P0CH08 38030725
    780436 8ccs:Y (1.97) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    780437 8ccs:a (1.97) BS01 rna ? GO:0002181 ... P0CX27 38030725
    780438 8ccs:a (1.97) BS02 rna ? GO:0002181 ... P0CX27 38030725
    780439 8ccs:a (1.97) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    780440 8ccs:b (1.97) BS01 rna ? GO:0002181 ... P0CX25 38030725
    780441 8ccs:b (1.97) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    780442 8ccs:d (1.97) BS01 rna ? GO:0000028 ... P32905 38030725
    780443 8ccs:e (1.97) BS01 rna ? GO:0000462 ... P33442 38030725
    780444 8ccs:f (1.97) BS01 rna ? GO:0000054 ... P25443 38030725
    780445 8ccs:g (1.97) BS01 rna ? GO:0000054 ... P05750 38030725
    780446 8ccs:h (1.97) BS01 rna ? GO:0002181 ... P0CX35 38030725
    780447 8ccs:i (1.97) BS01 rna ? GO:0000028 ... P26783 38030725
    780448 8ccs:j (1.97) BS01 rna ? GO:0000462 ... P0CX37 38030725
    780449 8ccs:k (1.97) BS01 rna ? GO:0002181 ... P26786 38030725
    780450 8ccs:l (1.97) BS01 rna ? GO:0000462 ... P0CX40 38030725
    780451 8ccs:m (1.97) BS01 rna ? GO:0000462 ... O13516 38030725
    780452 8ccs:n (1.97) BS01 rna ? GO:0000054 ... Q08745 38030725
    780453 8ccs:o (1.97) BS01 rna ? GO:0000028 ... P0CX47 38030725
    780454 8ccs:p (1.97) BS01 rna ? GO:0000462 ... P05756 38030725
    780455 8ccs:p (1.97) BS02 rna ? GO:0000462 ... P05756 38030725
    780456 8ccs:q (1.97) BS01 rna ? GO:0000028 ... P06367 38030725
    780457 8ccs:q (1.97) BS02 rna ? GO:0000028 ... P06367 38030725
    780458 8ccs:r (1.97) BS01 rna ? GO:0000028 ... Q01855 38030725
    780459 8ccs:s (1.97) BS01 rna ? GO:0000462 ... P0CX51 38030725
    780460 8ccs:t (1.97) BS01 rna ? GO:0000028 ... P02407 38030725
    780461 8ccs:u (1.97) BS01 rna ? GO:0000054 ... P0CX55 38030725
    780462 8ccs:v (1.97) BS01 rna ? GO:0000028 ... P07280 38030725
    780463 8ccs:w (1.97) BS01 rna ? GO:0000462 ... P38701 38030725
    780464 8ccs:x (1.97) BS01 rna ? GO:0000447 ... P0C0V8 38030725
    780465 8ccs:y (1.97) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    780466 8ccs:z (1.97) BS01 rna ? GO:0000462 ... P0CX29 38030725
    780467 8ccs:z (1.97) BS02 rna ? GO:0000462 ... P0CX29 38030725
    780468 8cct:A (2.9) BS01 UAI ? GO:0003677 ... O75469 N/A
    780469 8cct:A (2.9) BS02 UAI ? GO:0003677 ... O75469 N/A
    780470 8ccu:AAA (1.6) BS01 U9X ? GO:0006508 ... Q8MNY2 38757505
    780471 8ccv:A (2.2) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780472 8ccv:A (2.2) BS02 NIO 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780473 8ccv:A (2.2) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780474 8ccv:B (2.2) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780475 8ccv:B (2.2) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780476 8ccv:B (2.2) BS03 NIO 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 36983061
    780477 8ccw:A (1.65) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780478 8ccw:A (1.65) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780479 8ccx:A (1.665) BS01 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    780480 8ccx:A (1.665) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    780481 8ccx:A (1.665) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    780482 8ccx:F (1.665) BS01 UDI 1.15.1.1 GO:0000302 ... P00441 38289969
    780483 8ccx:F (1.665) BS02 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    780484 8ccx:F (1.665) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    780485 8ccx:F (1.665) BS04 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    780486 8ccy:A (2.7) BS01 A3P 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    780487 8ccy:A (2.7) BS02 CA 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    780488 8ccz:A (1.95) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780489 8ccz:A (1.95) BS02 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780490 8ccz:A (1.95) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780491 8ccz:B (1.95) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780492 8ccz:B (1.95) BS02 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780493 8ccz:B (1.95) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 37109478
    780494 8cd0:A (2.42) BS01 A3P 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    780495 8cd0:A (2.42) BS02 CA 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    780496 8cd1:2 (3.0) BS01 rna ? GO:0003735 ... Q9HZN4 38443577
    780497 8cd1:4 (3.0) BS01 rna ? GO:0003735 ... P29436 38443577
    780498 8cd1:5 (3.0) BS01 rna ? GO:0003735 ... Q9I0A1 38443577
    780499 8cd1:6 (3.0) BS01 rna ? GO:0003735 ... Q9HWF6 38443577
    780500 8cd1:C (3.0) BS01 rna ? GO:0002181 ... Q9HWD8 38443577
    780501 8cd1:D (3.0) BS01 rna ? GO:0003735 ... Q9HWD5 38443577
    780502 8cd1:E (3.0) BS01 rna ? GO:0003735 ... Q9HWD6 38443577
    780503 8cd1:F (3.0) BS01 rna ? GO:0000049 ... Q9HWE7 38443577
    780504 8cd1:F (3.0) BS02 rna ? GO:0000049 ... Q9HWE7 38443577
    780505 8cd1:F (3.0) BS03 rna ? GO:0000049 ... Q9HWE7 38443577
    780506 8cd1:G (3.0) BS01 rna ? GO:0002181 ... Q9HWF0 38443577
    780507 8cd1:H (3.0) BS01 rna ? GO:0003735 ... Q9HUN2 38443577
    780508 8cd1:J (3.0) BS01 rna ? GO:0003729 ... Q9HVY2 38443577
    780509 8cd1:K (3.0) BS01 rna ? GO:0003735 ... Q9HWE5 38443577
    780510 8cd1:K (3.0) BS02 rna ? GO:0003735 ... Q9HWE5 38443577
    780511 8cd1:L (3.0) BS01 rna ? GO:0003735 ... Q9HWF4 38443577
    780512 8cd1:Le (3.0) BS01 rna ? GO:0003735 ... Q9HUD0 38443577
    780513 8cd1:Le (3.0) BS02 rna ? GO:0003735 ... Q9HUD0 38443577
    780514 8cd1:M (3.0) BS01 rna ? GO:0000049 ... Q9HWE2 38443577
    780515 8cd1:M (3.0) BS02 rna ? GO:0000049 ... Q9HWE2 38443577
    780516 8cd1:N (3.0) BS01 rna ? GO:0003735 ... O52761 38443577
    780517 8cd1:O (3.0) BS01 rna ? GO:0003735 ... Q9HWF1 38443577
    780518 8cd1:O (3.0) BS02 rna ? GO:0003735 ... Q9HWF1 38443577
    780519 8cd1:P (3.0) BS01 rna ? GO:0003735 ... Q9HXQ2 38443577
    780520 8cd1:P (3.0) BS02 rna ? GO:0003735 ... Q9HXQ2 38443577
    780521 8cd1:P (3.0) BS03 MG ? GO:0003735 ... Q9HXQ2 38443577
    780522 8cd1:Q (3.0) BS01 rna ? GO:0000027 ... Q9I0A2 38443577
    780523 8cd1:R (3.0) BS01 rna ? GO:0003723 ... Q9HVL6 38443577
    780524 8cd1:S (3.0) BS01 rna ? GO:0003735 ... Q9HWE0 38443577
    780525 8cd1:T (3.0) BS01 rna ? GO:0003735 ... Q9HWD7 38443577
    780526 8cd1:U (3.0) BS01 rna ? GO:0003723 ... Q9HWE6 38443577
    780527 8cd1:V (3.0) BS01 rna ? GO:0003723 ... Q9HVC4 38443577
    780528 8cd1:V (3.0) BS02 rna ? GO:0003723 ... Q9HVC4 38443577
    780529 8cd1:W (3.0) BS01 rna ? GO:0003735 ... Q9HVL7 38443577
    780530 8cd1:W (3.0) BS02 rna ? GO:0003735 ... Q9HVL7 38443577
    780531 8cd1:X (3.0) BS01 rna ? GO:0003735 ... Q9HTN8 38443577
    780532 8cd1:Y (3.0) BS01 rna ? GO:0003735 ... Q9HWE3 38443577
    780533 8cd1:Z (3.0) BS01 rna ? GO:0003735 ... Q9HWF3 38443577
    780534 8cd1:Z (3.0) BS02 rna ? GO:0003735 ... Q9HWF3 38443577
    780535 8cd1:b (3.0) BS01 rna ? GO:0003735 ... O82850 38443577
    780536 8cd1:c (3.0) BS01 rna ? GO:0003676 ... Q9HWE1 38443577
    780537 8cd1:d (3.0) BS01 rna ? GO:0003723 ... O52759 38443577
    780538 8cd1:e (3.0) BS01 rna ? GO:0003723 ... Q9HWF2 38443577
    780539 8cd1:f (3.0) BS01 rna ? GO:0003735 ... Q9HUM9 38443577
    780540 8cd1:g (3.0) BS01 rna ? GO:0000028 ... Q9HWD1 38443577
    780541 8cd1:h (3.0) BS01 rna ? GO:0003735 ... Q9HWE9 38443577
    780542 8cd1:i (3.0) BS01 rna ? GO:0003723 ... Q9HVY3 38443577
    780543 8cd1:j (3.0) BS01 rna ? GO:0000049 ... Q9HWD4 38443577
    780544 8cd1:k (3.0) BS01 rna ? GO:0003735 ... Q9HWF8 38443577
    780545 8cd1:l (3.0) BS01 rna ? GO:0000049 ... Q9HWD0 38443577
    780546 8cd1:m (3.0) BS01 rna ? GO:0000049 ... Q9HWF7 38443577
    780547 8cd1:m (3.0) BS02 rna ? GO:0000049 ... Q9HWF7 38443577
    780548 8cd1:n (3.0) BS01 rna ? GO:0003735 ... Q9HWE8 38443577
    780549 8cd1:o (3.0) BS01 rna ? GO:0003735 ... Q9HV58 38443577
    780550 8cd1:o (3.0) BS02 rna ? GO:0003735 ... Q9HV58 38443577
    780551 8cd1:p (3.0) BS01 rna ? GO:0003735 ... Q9HXP9 38443577
    780552 8cd1:q (3.0) BS01 rna ? GO:0003735 ... Q9HWE4 38443577
    780553 8cd1:r (3.0) BS01 rna ? GO:0003735 ... Q9HUN0 38443577
    780554 8cd1:s (3.0) BS01 rna ? GO:0000028 ... Q9HWD9 38443577
    780555 8cd1:t (3.0) BS01 rna ? GO:0003723 ... Q9HVM1 38443577
    780556 8cd1:u (3.0) BS01 rna ? GO:0003735 ... Q9I5V8 38443577
    780557 8cd1:v (3.0) BS01 rna ? N/A Q8SDE8 38443577
    780558 8cd1:v (3.0) BS02 rna ? N/A Q8SDE8 38443577
    780559 8cd3:B (1.9) BS01 peptide ? N/A Q14160 37430142
    780560 8cd8:A (1.65) BS01 peptide 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780561 8cd8:A (1.65) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780562 8cd8:A (1.65) BS03 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780563 8cd8:A (1.65) BS04 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780564 8cd8:A (1.65) BS05 AES 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780565 8cd8:C (1.65) BS01 peptide 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780566 8cd8:C (1.65) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780567 8cd8:C (1.65) BS03 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780568 8cd8:C (1.65) BS04 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780569 8cd8:C (1.65) BS05 AES 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780570 8cd9:AAA (1.55) BS01 UA9 ? GO:0006508 ... Q8MNY2 38757505
    780571 8cdb:A (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780572 8cdb:A (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780573 8cdb:B (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780574 8cdb:B (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780575 8cdb:C (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780576 8cdb:C (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780577 8cdb:D (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780578 8cdb:D (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780579 8cdb:E (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780580 8cdb:E (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780581 8cdb:F (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780582 8cdb:F (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780583 8cdb:G (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780584 8cdb:G (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780585 8cdb:H (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780586 8cdb:H (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780587 8cdb:I (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780588 8cdb:I (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780589 8cdb:J (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780590 8cdb:J (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780591 8cdb:K (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780592 8cdb:K (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780593 8cdb:L (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780594 8cdb:L (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780595 8cdb:M (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780596 8cdb:M (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780597 8cdb:N (4.5) BS01 ZN 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780598 8cdb:N (4.5) BS02 CA 3.4.24.- GO:0006508 ... Q8TL28 36857690
    780599 8cdf:A (1.77) BS01 FE2 1.14.11.64 GO:0005506 ... P76621 N/A
    780600 8cdg:A (2.9) BS01 UTF ? GO:0002225 ... Q16552 37449080

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).