SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    780601 8cdg:B (2.9) BS01 UTF ? GO:0002225 ... Q16552 37449080
    780602 8cdj:C (3.4) BS01 peptide ? GO:0000082 ... Q13616 37028429
    780603 8cdk:R (3.32) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    780604 8cdk:R (3.32) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    780605 8cdk:R (3.32) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    780606 8cdl:0 (2.72) BS01 rna ? GO:0000462 ... P0CX31 38030725
    780607 8cdl:1 (2.72) BS01 rna ? GO:0002181 ... Q3E792 38030725
    780608 8cdl:2 (2.72) BS01 rna ? GO:0000054 ... P39938 38030725
    780609 8cdl:2 (2.72) BS02 ZN ? GO:0000054 ... P39938 38030725
    780610 8cdl:3 (2.72) BS01 rna ? GO:0000028 ... P35997 38030725
    780611 8cdl:4 (2.72) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    780612 8cdl:5 (2.72) BS01 rna ? GO:0002181 ... P41057 38030725
    780613 8cdl:5 (2.72) BS02 ZN ? GO:0002181 ... P41057 38030725
    780614 8cdl:6 (2.72) BS01 rna ? GO:0002181 ... P0CX33 38030725
    780615 8cdl:7 (2.72) BS01 rna ? GO:0001965 ... P38011 38030725
    780616 8cdl:8 (2.72) BS01 rna ? GO:0000028 ... P05759 38030725
    780617 8cdl:A (2.72) BS01 rna ? GO:0000470 ... P26784 38030725
    780618 8cdl:B (2.72) BS01 rna ? GO:0000448 ... P05740 38030725
    780619 8cdl:B (2.72) BS02 rna ? GO:0000448 ... P05740 38030725
    780620 8cdl:C (2.72) BS01 rna ? GO:0002181 ... P0CX49 38030725
    780621 8cdl:D (2.72) BS01 rna ? GO:0002181 ... P0CX82 38030725
    780622 8cdl:D (2.72) BS02 rna ? GO:0002181 ... P0CX82 38030725
    780623 8cdl:DD (2.72) BS01 rna ? GO:0000027 ... P05317 38030725
    780624 8cdl:E (2.72) BS01 rna ? GO:0002181 ... P0CX23 38030725
    780625 8cdl:E (2.72) BS02 rna ? GO:0002181 ... P0CX23 38030725
    780626 8cdl:EE (2.72) BS01 rna ? GO:0002181 ... P0CX45 38030725
    780627 8cdl:EE (2.72) BS02 rna ? GO:0002181 ... P0CX45 38030725
    780628 8cdl:Ee (2.72) BS01 rna ? GO:0000027 ... P0CX53 38030725
    780629 8cdl:F (2.72) BS01 rna ? GO:0002181 ... Q02753 38030725
    780630 8cdl:F (2.72) BS02 rna ? GO:0002181 ... Q02753 38030725
    780631 8cdl:FF (2.72) BS01 rna ? GO:0000027 ... P14126 38030725
    780632 8cdl:G (2.72) BS01 rna ? GO:0002181 ... P05749 38030725
    780633 8cdl:GG (2.72) BS01 rna ? GO:0002181 ... P10664 38030725
    780634 8cdl:GG (2.72) BS02 rna ? GO:0002181 ... P10664 38030725
    780635 8cdl:H (2.72) BS01 rna ? GO:0002181 ... P0CX41 38030725
    780636 8cdl:H (2.72) BS02 rna ? GO:0002181 ... P0CX41 38030725
    780637 8cdl:HH (2.72) BS01 rna ? GO:0000027 ... P26321 38030725
    780638 8cdl:HH (2.72) BS02 rna ? GO:0000027 ... P26321 38030725
    780639 8cdl:I (2.72) BS01 rna ? GO:0002181 ... P04449 38030725
    780640 8cdl:II (2.72) BS01 rna ? GO:0000027 ... Q02326 38030725
    780641 8cdl:J (2.72) BS01 rna ? GO:0000027 ... P04456 38030725
    780642 8cdl:J (2.72) BS02 rna ? GO:0000027 ... P04456 38030725
    780643 8cdl:JJ (2.72) BS01 rna ? GO:0000463 ... P05737 38030725
    780644 8cdl:JJ (2.72) BS02 rna ? GO:0000463 ... P05737 38030725
    780645 8cdl:K (2.72) BS01 rna ? GO:0002181 ... P05743 38030725
    780646 8cdl:K (2.72) BS02 rna ? GO:0002181 ... P05743 38030725
    780647 8cdl:KK (2.72) BS01 rna ? GO:0000470 ... P17076 38030725
    780648 8cdl:KK (2.72) BS02 rna ? GO:0000470 ... P17076 38030725
    780649 8cdl:L (2.72) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    780650 8cdl:LL (2.72) BS01 rna ? GO:0002181 ... P05738 38030725
    780651 8cdl:M (2.72) BS01 rna ? GO:0002181 ... P02406 38030725
    780652 8cdl:MM (2.72) BS01 rna ? GO:0000027 ... P41805 38030725
    780653 8cdl:MM (2.72) BS02 rna ? GO:0000027 ... P41805 38030725
    780654 8cdl:MM (2.72) BS03 rna ? GO:0000027 ... P41805 38030725
    780655 8cdl:N (2.72) BS01 rna ? GO:0002181 ... P05747 38030725
    780656 8cdl:NN (2.72) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    780657 8cdl:NN (2.72) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    780658 8cdl:O (2.72) BS01 rna ? GO:0002181 ... P14120 38030725
    780659 8cdl:OO (2.72) BS01 rna ? GO:0002181 ... Q12690 38030725
    780660 8cdl:OO (2.72) BS02 rna ? GO:0002181 ... Q12690 38030725
    780661 8cdl:P (2.72) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    780662 8cdl:PP (2.72) BS01 rna ? GO:0000027 ... P36105 38030725
    780663 8cdl:Q (2.72) BS01 rna ? GO:0002181 ... P38061 38030725
    780664 8cdl:QQ (2.72) BS01 rna ? GO:0002181 ... P05748 38030725
    780665 8cdl:QQ (2.72) BS02 rna ? GO:0002181 ... P05748 38030725
    780666 8cdl:R (2.72) BS01 rna ? GO:0000027 ... P05744 38030725
    780667 8cdl:S (2.72) BS01 rna ? GO:0002181 ... P87262 38030725
    780668 8cdl:S (2.72) BS02 ZN ? GO:0002181 ... P87262 38030725
    780669 8cdl:T (2.72) BS01 rna ? GO:0000463 ... P0CX84 38030725
    780670 8cdl:T (2.72) BS02 rna ? GO:0000463 ... P0CX84 38030725
    780671 8cdl:U (2.72) BS01 rna ? GO:0002181 ... P05745 38030725
    780672 8cdl:V (2.72) BS01 rna ? GO:0000448 ... P49166 38030725
    780673 8cdl:V (2.72) BS02 rna ? GO:0000448 ... P49166 38030725
    780674 8cdl:V (2.72) BS03 ZN ? GO:0000448 ... P49166 38030725
    780675 8cdl:W (2.72) BS01 rna ? GO:0002181 ... P49167 38030725
    780676 8cdl:X (2.72) BS01 rna ? GO:0002181 ... P04650 38030725
    780677 8cdl:X (2.72) BS02 rna ? GO:0002181 ... P04650 38030725
    780678 8cdl:Y (2.72) BS01 rna ? GO:0000027 ... P0CH08 38030725
    780679 8cdl:Y (2.72) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    780680 8cdl:a (2.72) BS01 rna ? GO:0002181 ... P0CX27 38030725
    780681 8cdl:a (2.72) BS02 rna ? GO:0002181 ... P0CX27 38030725
    780682 8cdl:a (2.72) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    780683 8cdl:b (2.72) BS01 rna ? GO:0002181 ... P0CX25 38030725
    780684 8cdl:b (2.72) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    780685 8cdl:d (2.72) BS01 rna ? GO:0000028 ... P32905 38030725
    780686 8cdl:e (2.72) BS01 rna ? GO:0000462 ... P33442 38030725
    780687 8cdl:e (2.72) BS02 rna ? GO:0000462 ... P33442 38030725
    780688 8cdl:f (2.72) BS01 rna ? GO:0000054 ... P25443 38030725
    780689 8cdl:g (2.72) BS01 rna ? GO:0000054 ... P05750 38030725
    780690 8cdl:h (2.72) BS01 rna ? GO:0002181 ... P0CX35 38030725
    780691 8cdl:i (2.72) BS01 rna ? GO:0000028 ... P26783 38030725
    780692 8cdl:j (2.72) BS01 rna ? GO:0000462 ... P0CX37 38030725
    780693 8cdl:k (2.72) BS01 rna ? GO:0002181 ... P26786 38030725
    780694 8cdl:l (2.72) BS01 rna ? GO:0000462 ... P0CX40 38030725
    780695 8cdl:m (2.72) BS01 rna ? GO:0000462 ... O13516 38030725
    780696 8cdl:n (2.72) BS01 rna ? GO:0000054 ... Q08745 38030725
    780697 8cdl:o (2.72) BS01 rna ? GO:0000028 ... P0CX47 38030725
    780698 8cdl:p (2.72) BS01 rna ? GO:0000462 ... P05756 38030725
    780699 8cdl:p (2.72) BS02 rna ? GO:0000462 ... P05756 38030725
    780700 8cdl:q (2.72) BS01 rna ? GO:0000028 ... P06367 38030725
    780701 8cdl:q (2.72) BS02 rna ? GO:0000028 ... P06367 38030725
    780702 8cdl:q (2.72) BS03 MG ? GO:0000028 ... P06367 38030725
    780703 8cdl:r (2.72) BS01 rna ? GO:0000028 ... Q01855 38030725
    780704 8cdl:s (2.72) BS01 rna ? GO:0000462 ... P0CX51 38030725
    780705 8cdl:t (2.72) BS01 rna ? GO:0000028 ... P02407 38030725
    780706 8cdl:u (2.72) BS01 rna ? GO:0000054 ... P0CX55 38030725
    780707 8cdl:v (2.72) BS01 rna ? GO:0000028 ... P07280 38030725
    780708 8cdl:w (2.72) BS01 rna ? GO:0000462 ... P38701 38030725
    780709 8cdl:y (2.72) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    780710 8cdl:z (2.72) BS01 rna ? GO:0000462 ... P0CX29 38030725
    780711 8cdm:A (2.35) BS01 KQ0 ? GO:0000146 ... Q8IDR3 37308472
    780712 8cdn:A (2.55) BS01 dna ? GO:0000978 ... O15178 N/A
    780713 8cdn:A (2.55) BS02 dna ? GO:0000978 ... O15178 N/A
    780714 8cdo:A (1.32) BS01 GLC ? GO:0015833 ... A5WYD2 38058289
    780715 8cdo:A (1.32) BS02 FRU ? GO:0015833 ... A5WYD2 38058289
    780716 8cdo:A (1.32) BS03 GLC ? GO:0015833 ... A5WYD2 38058289
    780717 8cdo:A (1.32) BS04 FRU ? GO:0015833 ... A5WYD2 38058289
    780718 8cdo:A (1.32) BS05 BNX ? GO:0015833 ... A5WYD2 38058289
    780719 8cdo:A (1.32) BS06 ALX ? GO:0015833 ... A5WYD2 38058289
    780720 8cdq:A (2.21) BS01 AGS ? GO:0000146 ... Q8IDR3 37308472
    780721 8cdq:A (2.21) BS02 MG ? GO:0000146 ... Q8IDR3 37308472
    780722 8cdq:A (2.21) BS03 KQ0 ? GO:0000146 ... Q8IDR3 37308472
    780723 8cdr:0 (2.04) BS01 rna ? GO:0000462 ... P0CX31 38030725
    780724 8cdr:1 (2.04) BS01 rna ? GO:0002181 ... Q3E792 38030725
    780725 8cdr:2 (2.04) BS01 rna ? GO:0000054 ... P39938 38030725
    780726 8cdr:2 (2.04) BS02 ZN ? GO:0000054 ... P39938 38030725
    780727 8cdr:3 (2.04) BS01 rna ? GO:0000028 ... P35997 38030725
    780728 8cdr:4 (2.04) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    780729 8cdr:5 (2.04) BS01 rna ? GO:0002181 ... P41057 38030725
    780730 8cdr:5 (2.04) BS02 ZN ? GO:0002181 ... P41057 38030725
    780731 8cdr:6 (2.04) BS01 rna ? GO:0002181 ... P0CX33 38030725
    780732 8cdr:7 (2.04) BS01 rna ? GO:0001965 ... P38011 38030725
    780733 8cdr:8 (2.04) BS01 rna ? GO:0000028 ... P05759 38030725
    780734 8cdr:8 (2.04) BS02 ZN ? GO:0000028 ... P05759 38030725
    780735 8cdr:A (2.04) BS01 rna ? GO:0000470 ... P26784 38030725
    780736 8cdr:Aa (2.04) BS01 rna 3.6.5.- GO:0003746 ... P32324 38030725
    780737 8cdr:Aa (2.04) BS02 rna 3.6.5.- GO:0003746 ... P32324 38030725
    780738 8cdr:Aa (2.04) BS03 rna 3.6.5.- GO:0003746 ... P32324 38030725
    780739 8cdr:Aa (2.04) BS04 GDP 3.6.5.- GO:0003746 ... P32324 38030725
    780740 8cdr:Aa (2.04) BS05 SO1 3.6.5.- GO:0003746 ... P32324 38030725
    780741 8cdr:B (2.04) BS01 rna ? GO:0000448 ... P05740 38030725
    780742 8cdr:B (2.04) BS02 rna ? GO:0000448 ... P05740 38030725
    780743 8cdr:C (2.04) BS01 rna ? GO:0002181 ... P0CX49 38030725
    780744 8cdr:D (2.04) BS01 rna ? GO:0002181 ... P0CX82 38030725
    780745 8cdr:D (2.04) BS02 rna ? GO:0002181 ... P0CX82 38030725
    780746 8cdr:DD (2.04) BS01 rna ? GO:0000027 ... P05317 38030725
    780747 8cdr:E (2.04) BS01 rna ? GO:0002181 ... P0CX23 38030725
    780748 8cdr:E (2.04) BS02 rna ? GO:0002181 ... P0CX23 38030725
    780749 8cdr:EE (2.04) BS01 rna ? GO:0002181 ... P0CX45 38030725
    780750 8cdr:EE (2.04) BS02 rna ? GO:0002181 ... P0CX45 38030725
    780751 8cdr:EE (2.04) BS03 MG ? GO:0002181 ... P0CX45 38030725
    780752 8cdr:Ee (2.04) BS01 rna ? GO:0000027 ... P0CX53 38030725
    780753 8cdr:F (2.04) BS01 rna ? GO:0002181 ... Q02753 38030725
    780754 8cdr:F (2.04) BS02 rna ? GO:0002181 ... Q02753 38030725
    780755 8cdr:FF (2.04) BS01 rna ? GO:0000027 ... P14126 38030725
    780756 8cdr:G (2.04) BS01 rna ? GO:0002181 ... P05749 38030725
    780757 8cdr:GG (2.04) BS01 rna ? GO:0002181 ... P10664 38030725
    780758 8cdr:GG (2.04) BS02 rna ? GO:0002181 ... P10664 38030725
    780759 8cdr:H (2.04) BS01 rna ? GO:0002181 ... P0CX41 38030725
    780760 8cdr:H (2.04) BS02 rna ? GO:0002181 ... P0CX41 38030725
    780761 8cdr:HH (2.04) BS01 rna ? GO:0000027 ... P26321 38030725
    780762 8cdr:HH (2.04) BS02 rna ? GO:0000027 ... P26321 38030725
    780763 8cdr:I (2.04) BS01 rna ? GO:0002181 ... P04449 38030725
    780764 8cdr:II (2.04) BS01 rna ? GO:0000027 ... Q02326 38030725
    780765 8cdr:J (2.04) BS01 rna ? GO:0000027 ... P04456 38030725
    780766 8cdr:J (2.04) BS02 rna ? GO:0000027 ... P04456 38030725
    780767 8cdr:JJ (2.04) BS01 rna ? GO:0000463 ... P05737 38030725
    780768 8cdr:JJ (2.04) BS02 rna ? GO:0000463 ... P05737 38030725
    780769 8cdr:K (2.04) BS01 rna ? GO:0002181 ... P05743 38030725
    780770 8cdr:K (2.04) BS02 rna ? GO:0002181 ... P05743 38030725
    780771 8cdr:KK (2.04) BS01 rna ? GO:0000470 ... P17076 38030725
    780772 8cdr:KK (2.04) BS02 rna ? GO:0000470 ... P17076 38030725
    780773 8cdr:L (2.04) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    780774 8cdr:LL (2.04) BS01 rna ? GO:0002181 ... P05738 38030725
    780775 8cdr:M (2.04) BS01 rna ? GO:0002181 ... P02406 38030725
    780776 8cdr:MM (2.04) BS01 rna ? GO:0000027 ... P41805 38030725
    780777 8cdr:MM (2.04) BS02 rna ? GO:0000027 ... P41805 38030725
    780778 8cdr:MM (2.04) BS03 rna ? GO:0000027 ... P41805 38030725
    780779 8cdr:N (2.04) BS01 rna ? GO:0002181 ... P05747 38030725
    780780 8cdr:NN (2.04) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    780781 8cdr:NN (2.04) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    780782 8cdr:NN (2.04) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    780783 8cdr:O (2.04) BS01 rna ? GO:0002181 ... P14120 38030725
    780784 8cdr:OO (2.04) BS01 rna ? GO:0002181 ... Q12690 38030725
    780785 8cdr:OO (2.04) BS02 rna ? GO:0002181 ... Q12690 38030725
    780786 8cdr:P (2.04) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    780787 8cdr:PP (2.04) BS01 rna ? GO:0000027 ... P36105 38030725
    780788 8cdr:Q (2.04) BS01 rna ? GO:0002181 ... P38061 38030725
    780789 8cdr:QQ (2.04) BS01 rna ? GO:0002181 ... P05748 38030725
    780790 8cdr:QQ (2.04) BS02 rna ? GO:0002181 ... P05748 38030725
    780791 8cdr:R (2.04) BS01 rna ? GO:0000027 ... P05744 38030725
    780792 8cdr:S (2.04) BS01 rna ? GO:0002181 ... P87262 38030725
    780793 8cdr:S (2.04) BS02 ZN ? GO:0002181 ... P87262 38030725
    780794 8cdr:T (2.04) BS01 rna ? GO:0000463 ... P0CX84 38030725
    780795 8cdr:T (2.04) BS02 rna ? GO:0000463 ... P0CX84 38030725
    780796 8cdr:U (2.04) BS01 rna ? GO:0002181 ... P05745 38030725
    780797 8cdr:V (2.04) BS01 rna ? GO:0000448 ... P49166 38030725
    780798 8cdr:V (2.04) BS02 rna ? GO:0000448 ... P49166 38030725
    780799 8cdr:V (2.04) BS03 ZN ? GO:0000448 ... P49166 38030725
    780800 8cdr:W (2.04) BS01 rna ? GO:0002181 ... P49167 38030725

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).