SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    780801 8cdr:X (2.04) BS01 rna ? GO:0002181 ... P04650 38030725
    780802 8cdr:X (2.04) BS02 rna ? GO:0002181 ... P04650 38030725
    780803 8cdr:Y (2.04) BS01 rna ? GO:0000027 ... P0CH08 38030725
    780804 8cdr:Y (2.04) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    780805 8cdr:a (2.04) BS01 rna ? GO:0002181 ... P0CX27 38030725
    780806 8cdr:a (2.04) BS02 rna ? GO:0002181 ... P0CX27 38030725
    780807 8cdr:a (2.04) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    780808 8cdr:b (2.04) BS01 rna ? GO:0002181 ... P0CX25 38030725
    780809 8cdr:b (2.04) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    780810 8cdr:d (2.04) BS01 rna ? GO:0000028 ... P32905 38030725
    780811 8cdr:e (2.04) BS01 rna ? GO:0000462 ... P33442 38030725
    780812 8cdr:f (2.04) BS01 rna ? GO:0000054 ... P25443 38030725
    780813 8cdr:g (2.04) BS01 rna ? GO:0000054 ... P05750 38030725
    780814 8cdr:h (2.04) BS01 rna ? GO:0002181 ... P0CX35 38030725
    780815 8cdr:i (2.04) BS01 rna ? GO:0000028 ... P26783 38030725
    780816 8cdr:j (2.04) BS01 rna ? GO:0000462 ... P0CX37 38030725
    780817 8cdr:k (2.04) BS01 rna ? GO:0002181 ... P26786 38030725
    780818 8cdr:l (2.04) BS01 rna ? GO:0000462 ... P0CX40 38030725
    780819 8cdr:l (2.04) BS02 rna ? GO:0000462 ... P0CX40 38030725
    780820 8cdr:m (2.04) BS01 rna ? GO:0000462 ... O13516 38030725
    780821 8cdr:n (2.04) BS01 rna ? GO:0000054 ... Q08745 38030725
    780822 8cdr:o (2.04) BS01 rna ? GO:0000028 ... P0CX47 38030725
    780823 8cdr:p (2.04) BS01 rna ? GO:0000462 ... P05756 38030725
    780824 8cdr:p (2.04) BS02 rna ? GO:0000462 ... P05756 38030725
    780825 8cdr:q (2.04) BS01 rna ? GO:0000028 ... P06367 38030725
    780826 8cdr:r (2.04) BS01 rna ? GO:0000028 ... Q01855 38030725
    780827 8cdr:s (2.04) BS01 rna ? GO:0000462 ... P0CX51 38030725
    780828 8cdr:t (2.04) BS01 rna ? GO:0000028 ... P02407 38030725
    780829 8cdr:u (2.04) BS01 rna ? GO:0000054 ... P0CX55 38030725
    780830 8cdr:v (2.04) BS01 rna ? GO:0000028 ... P07280 38030725
    780831 8cdr:w (2.04) BS01 rna ? GO:0000462 ... P38701 38030725
    780832 8cdr:y (2.04) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    780833 8cdr:z (2.04) BS01 rna ? GO:0000462 ... P0CX29 38030725
    780834 8cdu:C (3.1) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780835 8cdu:C (3.1) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780836 8cdu:D (3.1) BS01 rna ? GO:0003735 ... P21464 38326618
    780837 8cdu:E (3.1) BS01 rna ? GO:0003676 ... P21465 38326618
    780838 8cdu:F (3.1) BS01 rna ? GO:0003723 ... P21466 38326618
    780839 8cdu:G (3.1) BS01 rna ? GO:0003723 ... P21467 38326618
    780840 8cdu:H (3.1) BS01 rna ? GO:0000028 ... P21469 38326618
    780841 8cdu:I (3.1) BS01 rna ? GO:0003735 ... P12879 38326618
    780842 8cdu:J (3.1) BS01 rna ? GO:0003723 ... P21470 38326618
    780843 8cdu:K (3.1) BS01 rna ? GO:0000049 ... P21471 38326618
    780844 8cdu:L (3.1) BS01 rna ? GO:0000049 ... P21472 38326618
    780845 8cdu:M (3.1) BS01 rna ? GO:0000049 ... P20282 38326618
    780846 8cdu:N (3.1) BS01 rna ? GO:0003735 ... P12878 38326618
    780847 8cdu:O (3.1) BS01 rna ? GO:0003735 ... P21473 38326618
    780848 8cdu:P (3.1) BS01 rna ? GO:0003735 ... P21474 38326618
    780849 8cdu:Q (3.1) BS01 rna ? GO:0003735 ... P12874 38326618
    780850 8cdu:R (3.1) BS01 rna ? GO:0000028 ... P21476 38326618
    780851 8cdu:S (3.1) BS01 rna ? GO:0003723 ... P21477 38326618
    780852 8cdu:T (3.1) BS01 rna ? GO:0003735 ... P21468 38326618
    780853 8cdu:U (3.1) BS01 rna ? GO:0003735 ... P21475 38326618
    780854 8cdu:V (3.1) BS01 rna ? GO:0003735 ... P04969 38326618
    780855 8cdv:C (4.73) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780856 8cdv:C (4.73) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780857 8cdv:F (4.73) BS01 rna ? GO:0003723 ... P21466 38326618
    780858 8cdv:G (4.73) BS01 rna ? GO:0003723 ... P21467 38326618
    780859 8cdv:H (4.73) BS01 rna ? GO:0000028 ... P21469 38326618
    780860 8cdv:H (4.73) BS02 rna ? GO:0000028 ... P21469 38326618
    780861 8cdv:I (4.73) BS01 rna ? GO:0003735 ... P12879 38326618
    780862 8cdv:J (4.73) BS01 rna ? GO:0003723 ... P21470 38326618
    780863 8cdv:K (4.73) BS01 rna ? GO:0000049 ... P21471 38326618
    780864 8cdv:L (4.73) BS01 rna ? GO:0000049 ... P21472 38326618
    780865 8cdv:M (4.73) BS01 rna ? GO:0000049 ... P20282 38326618
    780866 8cdv:O (4.73) BS01 rna ? GO:0003735 ... P21473 38326618
    780867 8cdv:P (4.73) BS01 rna ? GO:0003735 ... P21474 38326618
    780868 8cdv:Q (4.73) BS01 rna ? GO:0003735 ... P12874 38326618
    780869 8cdv:R (4.73) BS01 rna ? GO:0000028 ... P21476 38326618
    780870 8cdv:S (4.73) BS01 rna ? GO:0003723 ... P21477 38326618
    780871 8cdv:T (4.73) BS01 rna ? GO:0003735 ... P21468 38326618
    780872 8cdv:U (4.73) BS01 rna ? GO:0003735 ... P21475 38326618
    780873 8cdv:V (4.73) BS01 rna ? GO:0003735 ... P04969 38326618
    780874 8cdw:A (1.941) BS01 UES 2.7.11.1 GO:0004672 ... Q92918 37531921
    780875 8cdw:B (1.941) BS01 UES 2.7.11.1 GO:0004672 ... Q92918 37531921
    780876 8cdx:AAA (1.335) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780877 8cdx:AAA (1.335) BS02 UE7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780878 8cdx:BBB (1.335) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780879 8cdx:BBB (1.335) BS02 UE7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780880 8cdz:AAA (1.44) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780881 8cdz:AAA (1.44) BS02 U7M 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780882 8cdz:BBB (1.44) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780883 8cdz:BBB (1.44) BS02 U7M 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    780884 8ce3:A (1.89) BS01 UE0 2.4.1.155 GO:0030144 ... Q09328 N/A
    780885 8ce5:A (3.62) BS01 MG 7.6.2.5 GO:0005515 ... P33931 37626034
    780886 8ce5:A (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    780887 8ce5:A (3.62) BS03 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    780888 8ce5:a (3.62) BS01 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    780889 8ce5:a (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    780890 8ce5:a (3.62) BS03 MG 7.6.2.5 GO:0005515 ... P33931 37626034
    780891 8cec:C (3.57) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780892 8cec:C (3.57) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780893 8cec:D (3.57) BS01 rna ? GO:0003735 ... P21464 38326618
    780894 8cec:F (3.57) BS01 rna ? GO:0003723 ... P21466 38326618
    780895 8cec:G (3.57) BS01 rna ? GO:0003723 ... P21467 38326618
    780896 8cec:H (3.57) BS01 rna ? GO:0003676 ... P21465 38326618
    780897 8cec:I (3.57) BS01 rna ? GO:0003735 ... P12879 38326618
    780898 8cec:K (3.57) BS01 rna ? GO:0000028 ... P21469 38326618
    780899 8cec:L (3.57) BS01 rna ? GO:0000049 ... P21472 38326618
    780900 8cec:N (3.57) BS01 rna ? GO:0003723 ... P21470 38326618
    780901 8cec:O (3.57) BS01 rna ? GO:0003735 ... P21473 38326618
    780902 8cec:P (3.57) BS01 rna ? GO:0003735 ... P21474 38326618
    780903 8cec:Q (3.57) BS01 rna ? GO:0003735 ... P12874 38326618
    780904 8cec:R (3.57) BS01 rna ? GO:0000049 ... P21471 38326618
    780905 8cec:S (3.57) BS01 rna ? GO:0003723 ... P21477 38326618
    780906 8cec:T (3.57) BS01 rna ? GO:0003735 ... P21468 38326618
    780907 8cec:U (3.57) BS01 rna ? GO:0003735 ... P21475 38326618
    780908 8cec:V (3.57) BS01 rna ? GO:0003735 ... P04969 38326618
    780909 8cec:X (3.57) BS01 rna ? GO:0000049 ... P20282 38326618
    780910 8cec:Y (3.57) BS01 rna ? GO:0003735 ... P12878 38326618
    780911 8cec:a (3.57) BS01 rna ? GO:0000028 ... P21476 38326618
    780912 8ced:C (4.15) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780913 8ced:C (4.15) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780914 8ced:D (4.15) BS01 rna ? GO:0003735 ... P21464 38326618
    780915 8ced:E (4.15) BS01 rna ? GO:0003676 ... P21465 38326618
    780916 8ced:F (4.15) BS01 rna ? GO:0003723 ... P21466 38326618
    780917 8ced:G (4.15) BS01 rna ? GO:0003723 ... P21467 38326618
    780918 8ced:H (4.15) BS01 rna ? GO:0000028 ... P21469 38326618
    780919 8ced:I (4.15) BS01 rna ? GO:0003735 ... P12879 38326618
    780920 8ced:J (4.15) BS01 rna ? GO:0003723 ... P21470 38326618
    780921 8ced:K (4.15) BS01 rna ? GO:0000049 ... P21471 38326618
    780922 8ced:L (4.15) BS01 rna ? GO:0000049 ... P21472 38326618
    780923 8ced:M (4.15) BS01 rna ? GO:0000049 ... P20282 38326618
    780924 8ced:N (4.15) BS01 rna ? GO:0003735 ... P12878 38326618
    780925 8ced:O (4.15) BS01 rna ? GO:0003735 ... P21473 38326618
    780926 8ced:P (4.15) BS01 rna ? GO:0003735 ... P21474 38326618
    780927 8ced:Q (4.15) BS01 rna ? GO:0003735 ... P12874 38326618
    780928 8ced:R (4.15) BS01 rna ? GO:0000028 ... P21476 38326618
    780929 8ced:S (4.15) BS01 rna ? GO:0003723 ... P21477 38326618
    780930 8ced:T (4.15) BS01 rna ? GO:0003735 ... P21468 38326618
    780931 8ced:U (4.15) BS01 rna ? GO:0003735 ... P21475 38326618
    780932 8ced:V (4.15) BS01 rna ? GO:0003735 ... P04969 38326618
    780933 8cee:C (3.7) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780934 8cee:C (3.7) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    780935 8cee:D (3.7) BS01 rna ? GO:0003735 ... P21464 38326618
    780936 8cee:E (3.7) BS01 rna ? GO:0003676 ... P21465 38326618
    780937 8cee:F (3.7) BS01 rna ? GO:0003723 ... P21466 38326618
    780938 8cee:G (3.7) BS01 rna ? GO:0003723 ... P21467 38326618
    780939 8cee:H (3.7) BS01 rna ? GO:0000028 ... P21469 38326618
    780940 8cee:I (3.7) BS01 rna ? GO:0003735 ... P12879 38326618
    780941 8cee:J (3.7) BS01 rna ? GO:0003723 ... P21470 38326618
    780942 8cee:K (3.7) BS01 rna ? GO:0000049 ... P21471 38326618
    780943 8cee:L (3.7) BS01 rna ? GO:0000049 ... P21472 38326618
    780944 8cee:M (3.7) BS01 rna ? GO:0000049 ... P20282 38326618
    780945 8cee:N (3.7) BS01 rna ? GO:0003735 ... P12878 38326618
    780946 8cee:O (3.7) BS01 rna ? GO:0003735 ... P21473 38326618
    780947 8cee:P (3.7) BS01 rna ? GO:0003735 ... P21474 38326618
    780948 8cee:Q (3.7) BS01 rna ? GO:0003735 ... P12874 38326618
    780949 8cee:R (3.7) BS01 rna ? GO:0000028 ... P21476 38326618
    780950 8cee:S (3.7) BS01 rna ? GO:0003723 ... P21477 38326618
    780951 8cee:T (3.7) BS01 rna ? GO:0003735 ... P21468 38326618
    780952 8cee:U (3.7) BS01 rna ? GO:0003735 ... P21475 38326618
    780953 8cee:V (3.7) BS01 rna ? GO:0003735 ... P04969 38326618
    780954 8cef:C (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780955 8cef:C (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780956 8cef:C (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780957 8cef:C (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780958 8cef:D (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780959 8cef:D (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780960 8cef:D (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780961 8cef:D (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780962 8cef:G (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780963 8cef:G (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780964 8cef:G (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780965 8cef:G (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780966 8cef:H (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780967 8cef:H (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780968 8cef:H (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780969 8cef:H (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780970 8cef:J (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780971 8cef:J (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780972 8cef:J (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780973 8cef:J (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780974 8cef:K (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    780975 8cef:K (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    780976 8cef:K (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    780977 8cef:K (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    780978 8ceh:0 (2.05) BS01 rna ? GO:0000462 ... P0CX31 38030725
    780979 8ceh:1 (2.05) BS01 rna ? GO:0002181 ... Q3E792 38030725
    780980 8ceh:2 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    780981 8ceh:2 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    780982 8ceh:3 (2.05) BS01 rna ? GO:0000028 ... P35997 38030725
    780983 8ceh:4 (2.05) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    780984 8ceh:5 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    780985 8ceh:5 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    780986 8ceh:6 (2.05) BS01 rna ? GO:0002181 ... P0CX33 38030725
    780987 8ceh:7 (2.05) BS01 rna ? GO:0001965 ... P38011 38030725
    780988 8ceh:8 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    780989 8ceh:A (2.05) BS01 rna ? GO:0000470 ... P26784 38030725
    780990 8ceh:Aa (2.05) BS01 rna ? GO:0003924 ... N/A 38030725
    780991 8ceh:Aa (2.05) BS02 rna ? GO:0003924 ... N/A 38030725
    780992 8ceh:Aa (2.05) BS03 rna ? GO:0003924 ... N/A 38030725
    780993 8ceh:Aa (2.05) BS04 GDP ? GO:0003924 ... N/A 38030725
    780994 8ceh:Aa (2.05) BS05 SO1 ? GO:0003924 ... N/A 38030725
    780995 8ceh:B (2.05) BS01 rna ? GO:0000448 ... P05740 38030725
    780996 8ceh:B (2.05) BS02 rna ? GO:0000448 ... P05740 38030725
    780997 8ceh:C (2.05) BS01 rna ? GO:0002181 ... P0CX49 38030725
    780998 8ceh:D (2.05) BS01 rna ? GO:0002181 ... P0CX82 38030725
    780999 8ceh:D (2.05) BS02 rna ? GO:0002181 ... P0CX82 38030725
    781000 8ceh:DD (2.05) BS01 rna ? GO:0000027 ... P05317 38030725

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).