SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    781201 8ceu:e (1.83) BS01 rna ? GO:0001070 ... P60723 37550453
    781202 8ceu:f (1.83) BS01 rna ? GO:0000027 ... P62399 37550453
    781203 8ceu:f (1.83) BS02 rna ? GO:0000027 ... P62399 37550453
    781204 8ceu:g (1.83) BS01 rna ? GO:0000027 ... P0AG55 37550453
    781205 8ceu:h (1.83) BS01 rna ? GO:0002181 ... P0A7R1 37550453
    781206 8ceu:i (1.83) BS01 rna ? GO:0002181 ... P0AA10 37550453
    781207 8ceu:j (1.83) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    781208 8ceu:k (1.83) BS01 rna ? GO:0002181 ... P02413 37550453
    781209 8ceu:l (1.83) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    781210 8ceu:l (1.83) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    781211 8ceu:m (1.83) BS01 rna ? GO:0000027 ... P0AG44 37550453
    781212 8ceu:n (1.83) BS01 rna ? GO:0002181 ... P0C018 37550453
    781213 8ceu:n (1.83) BS02 rna ? GO:0002181 ... P0C018 37550453
    781214 8ceu:o (1.83) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    781215 8ceu:p (1.83) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    781216 8ceu:q (1.83) BS01 rna ? GO:0002181 ... P0AG48 37550453
    781217 8ceu:r (1.83) BS01 rna ? GO:0002181 ... P61175 37550453
    781218 8ceu:s (1.83) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    781219 8ceu:s (1.83) BS02 peptide ? GO:0000027 ... P0ADZ0 37550453
    781220 8ceu:t (1.83) BS01 rna ? GO:0000027 ... P60624 37550453
    781221 8ceu:u (1.83) BS01 rna ? GO:0000027 ... P68919 37550453
    781222 8ceu:u (1.83) BS02 rna ? GO:0000027 ... P68919 37550453
    781223 8ceu:v (1.83) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    781224 8ceu:v (1.83) BS02 rna ? GO:0000027 ... P0A7L8 37550453
    781225 8ceu:v (1.83) BS03 MG ? GO:0000027 ... P0A7L8 37550453
    781226 8ceu:w (1.83) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    781227 8ceu:x (1.83) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    781228 8ceu:y (1.83) BS01 rna ? GO:0000027 ... P0AG51 37550453
    781229 8ceu:y (1.83) BS02 rna ? GO:0000027 ... P0AG51 37550453
    781230 8ceu:z (1.83) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    781231 8cev:A (2.14) BS01 UG9 2.1.1.57 GO:0003746 ... A0A7H0DN74 37080993
    781232 8cev:B (2.14) BS01 UG9 2.1.1.57 GO:0003746 ... A0A7H0DN74 37080993
    781233 8cew:A (1.53) BS01 ZN 3.5.2.6 N/A Q6PJP8 38817593
    781234 8cew:A (1.53) BS02 UFI 3.5.2.6 N/A Q6PJP8 38817593
    781235 8cew:A (1.53) BS03 UFI 3.5.2.6 N/A Q6PJP8 38817593
    781236 8cex:A (2.3) BS01 UG0 3.2.2.-
    4.2.99.18
    GO:0000702 ... O08760 N/A
    781237 8cey:A (1.95) BS01 UEF 3.2.2.-
    4.2.99.18
    GO:0000702 ... O08760 N/A
    781238 8cey:B (1.95) BS01 UEF 3.2.2.-
    4.2.99.18
    GO:0000702 ... O08760 N/A
    781239 8cey:C (1.95) BS01 UEF 3.2.2.-
    4.2.99.18
    GO:0000702 ... O08760 N/A
    781240 8cf0:A (1.76) BS01 UF3 3.5.2.6 N/A Q6PJP8 38817593
    781241 8cf1:B (1.82) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    781242 8cf1:C (1.82) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    781243 8cf1:E (1.82) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    781244 8cf1:G (1.82) BS01 rna ? GO:0000028 ... P02359 37550453
    781245 8cf1:I (1.82) BS01 rna ? GO:0000049 ... P0A7X3 37550453
    781246 8cf1:J (1.82) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    781247 8cf1:M (1.82) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    781248 8cf1:N (1.82) BS01 rna ? GO:0000028 ... P0AG59 37550453
    781249 8cf1:S (1.82) BS01 rna ? GO:0000028 ... P0A7U3 37550453
    781250 8cf3:C (2.52) BS01 UJ9 N/A GO:0008658 ... P18357 39060390
    781251 8cf3:E (2.52) BS01 UJ9 N/A GO:0008658 ... P18357 39060390
    781252 8cf5:0 (2.71) BS01 rna ? GO:0000462 ... P0CX31 38030725
    781253 8cf5:1 (2.71) BS01 rna ? GO:0002181 ... Q3E792 38030725
    781254 8cf5:2 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    781255 8cf5:2 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    781256 8cf5:3 (2.71) BS01 rna ? GO:0000028 ... P35997 38030725
    781257 8cf5:4 (2.71) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    781258 8cf5:5 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    781259 8cf5:5 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    781260 8cf5:6 (2.71) BS01 rna ? GO:0002181 ... P0CX33 38030725
    781261 8cf5:7 (2.71) BS01 rna ? GO:0001965 ... P38011 38030725
    781262 8cf5:8 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    781263 8cf5:A (2.71) BS01 rna ? GO:0000470 ... P26784 38030725
    781264 8cf5:Aa (2.71) BS01 rna ? GO:0003924 ... N/A 38030725
    781265 8cf5:Aa (2.71) BS02 rna ? GO:0003924 ... N/A 38030725
    781266 8cf5:Aa (2.71) BS03 rna ? GO:0003924 ... N/A 38030725
    781267 8cf5:Aa (2.71) BS04 GTP ? GO:0003924 ... N/A 38030725
    781268 8cf5:Aa (2.71) BS05 SO1 ? GO:0003924 ... N/A 38030725
    781269 8cf5:Aa (2.71) BS06 MG ? GO:0003924 ... N/A 38030725
    781270 8cf5:B (2.71) BS01 rna ? GO:0000448 ... P05740 38030725
    781271 8cf5:B (2.71) BS02 rna ? GO:0000448 ... P05740 38030725
    781272 8cf5:C (2.71) BS01 rna ? GO:0002181 ... P0CX49 38030725
    781273 8cf5:D (2.71) BS01 rna ? GO:0002181 ... P0CX82 38030725
    781274 8cf5:D (2.71) BS02 rna ? GO:0002181 ... P0CX82 38030725
    781275 8cf5:DD (2.71) BS01 rna ? GO:0000027 ... P05317 38030725
    781276 8cf5:E (2.71) BS01 rna ? GO:0002181 ... P0CX23 38030725
    781277 8cf5:E (2.71) BS02 rna ? GO:0002181 ... P0CX23 38030725
    781278 8cf5:EE (2.71) BS01 rna ? GO:0002181 ... P0CX45 38030725
    781279 8cf5:EE (2.71) BS02 rna ? GO:0002181 ... P0CX45 38030725
    781280 8cf5:Ee (2.71) BS01 rna ? GO:0000027 ... P0CX53 38030725
    781281 8cf5:F (2.71) BS01 rna ? GO:0002181 ... Q02753 38030725
    781282 8cf5:F (2.71) BS02 rna ? GO:0002181 ... Q02753 38030725
    781283 8cf5:FF (2.71) BS01 rna ? GO:0000027 ... P14126 38030725
    781284 8cf5:G (2.71) BS01 rna ? GO:0002181 ... P05749 38030725
    781285 8cf5:GG (2.71) BS01 rna ? GO:0002181 ... P10664 38030725
    781286 8cf5:GG (2.71) BS02 rna ? GO:0002181 ... P10664 38030725
    781287 8cf5:H (2.71) BS01 rna ? GO:0002181 ... P0CX41 38030725
    781288 8cf5:HH (2.71) BS01 rna ? GO:0000027 ... P26321 38030725
    781289 8cf5:HH (2.71) BS02 rna ? GO:0000027 ... P26321 38030725
    781290 8cf5:I (2.71) BS01 rna ? GO:0002181 ... P04449 38030725
    781291 8cf5:II (2.71) BS01 rna ? GO:0000027 ... Q02326 38030725
    781292 8cf5:J (2.71) BS01 rna ? GO:0000027 ... P04456 38030725
    781293 8cf5:J (2.71) BS02 rna ? GO:0000027 ... P04456 38030725
    781294 8cf5:JJ (2.71) BS01 rna ? GO:0000463 ... P05737 38030725
    781295 8cf5:JJ (2.71) BS02 rna ? GO:0000463 ... P05737 38030725
    781296 8cf5:K (2.71) BS01 rna ? GO:0002181 ... P05743 38030725
    781297 8cf5:K (2.71) BS02 rna ? GO:0002181 ... P05743 38030725
    781298 8cf5:KK (2.71) BS01 rna ? GO:0000470 ... P17076 38030725
    781299 8cf5:KK (2.71) BS02 rna ? GO:0000470 ... P17076 38030725
    781300 8cf5:L (2.71) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    781301 8cf5:LL (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    781302 8cf5:M (2.71) BS01 rna ? GO:0002181 ... P02406 38030725
    781303 8cf5:MM (2.71) BS01 rna ? GO:0000027 ... P41805 38030725
    781304 8cf5:MM (2.71) BS02 rna ? GO:0000027 ... P41805 38030725
    781305 8cf5:MM (2.71) BS03 rna ? GO:0000027 ... P41805 38030725
    781306 8cf5:N (2.71) BS01 rna ? GO:0002181 ... P05747 38030725
    781307 8cf5:NN (2.71) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    781308 8cf5:NN (2.71) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    781309 8cf5:O (2.71) BS01 rna ? GO:0002181 ... P14120 38030725
    781310 8cf5:OO (2.71) BS01 rna ? GO:0002181 ... Q12690 38030725
    781311 8cf5:OO (2.71) BS02 rna ? GO:0002181 ... Q12690 38030725
    781312 8cf5:P (2.71) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    781313 8cf5:PP (2.71) BS01 rna ? GO:0000027 ... P36105 38030725
    781314 8cf5:Q (2.71) BS01 rna ? GO:0002181 ... P38061 38030725
    781315 8cf5:QQ (2.71) BS01 rna ? GO:0002181 ... P05748 38030725
    781316 8cf5:QQ (2.71) BS02 rna ? GO:0002181 ... P05748 38030725
    781317 8cf5:R (2.71) BS01 rna ? GO:0000027 ... P05744 38030725
    781318 8cf5:S (2.71) BS01 rna ? GO:0002181 ... P87262 38030725
    781319 8cf5:S (2.71) BS02 ZN ? GO:0002181 ... P87262 38030725
    781320 8cf5:T (2.71) BS01 rna ? GO:0000463 ... P0CX84 38030725
    781321 8cf5:T (2.71) BS02 rna ? GO:0000463 ... P0CX84 38030725
    781322 8cf5:U (2.71) BS01 rna ? GO:0002181 ... P05745 38030725
    781323 8cf5:V (2.71) BS01 rna ? GO:0000448 ... P49166 38030725
    781324 8cf5:V (2.71) BS02 rna ? GO:0000448 ... P49166 38030725
    781325 8cf5:V (2.71) BS03 ZN ? GO:0000448 ... P49166 38030725
    781326 8cf5:W (2.71) BS01 rna ? GO:0002181 ... P49167 38030725
    781327 8cf5:X (2.71) BS01 rna ? GO:0002181 ... P04650 38030725
    781328 8cf5:X (2.71) BS02 rna ? GO:0002181 ... P04650 38030725
    781329 8cf5:Y (2.71) BS01 rna ? GO:0000027 ... P0CH08 38030725
    781330 8cf5:Y (2.71) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    781331 8cf5:a (2.71) BS01 rna ? GO:0002181 ... P0CX27 38030725
    781332 8cf5:a (2.71) BS02 rna ? GO:0002181 ... P0CX27 38030725
    781333 8cf5:a (2.71) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    781334 8cf5:b (2.71) BS01 rna ? GO:0002181 ... P0CX25 38030725
    781335 8cf5:b (2.71) BS02 rna ? GO:0002181 ... P0CX25 38030725
    781336 8cf5:b (2.71) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    781337 8cf5:d (2.71) BS01 rna ? GO:0000028 ... P32905 38030725
    781338 8cf5:e (2.71) BS01 rna ? GO:0000462 ... P33442 38030725
    781339 8cf5:e (2.71) BS02 rna ? GO:0000462 ... P33442 38030725
    781340 8cf5:f (2.71) BS01 rna ? GO:0000054 ... P25443 38030725
    781341 8cf5:g (2.71) BS01 rna ? GO:0003723 ... N/A 38030725
    781342 8cf5:h (2.71) BS01 rna ? GO:0002181 ... P0CX35 38030725
    781343 8cf5:i (2.71) BS01 rna ? GO:0000028 ... P26783 38030725
    781344 8cf5:j (2.71) BS01 rna ? GO:0000462 ... P0CX37 38030725
    781345 8cf5:k (2.71) BS01 rna ? GO:0002181 ... P26786 38030725
    781346 8cf5:l (2.71) BS01 rna ? GO:0000462 ... P0CX40 38030725
    781347 8cf5:m (2.71) BS01 rna ? GO:0000462 ... O13516 38030725
    781348 8cf5:n (2.71) BS01 rna ? GO:0000054 ... Q08745 38030725
    781349 8cf5:o (2.71) BS01 rna ? GO:0000028 ... P0CX47 38030725
    781350 8cf5:p (2.71) BS01 rna ? GO:0000462 ... P05756 38030725
    781351 8cf5:q (2.71) BS01 rna ? GO:0000028 ... P06367 38030725
    781352 8cf5:r (2.71) BS01 rna ? GO:0000028 ... Q01855 38030725
    781353 8cf5:s (2.71) BS01 rna ? GO:0000462 ... P0CX51 38030725
    781354 8cf5:t (2.71) BS01 rna ? GO:0000028 ... P02407 38030725
    781355 8cf5:u (2.71) BS01 rna ? GO:0000054 ... P0CX55 38030725
    781356 8cf5:v (2.71) BS01 rna ? GO:0000028 ... P07280 38030725
    781357 8cf5:w (2.71) BS01 rna ? GO:0003723 ... N/A 38030725
    781358 8cf5:x (2.71) BS01 rna ? GO:0000447 ... P0C0V8 38030725
    781359 8cf5:y (2.71) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    781360 8cf5:z (2.71) BS01 rna ? GO:0000462 ... P0CX29 38030725
    781361 8cf5:z (2.71) BS02 rna ? GO:0000462 ... P0CX29 38030725
    781362 8cf6:A (1.34) BS01 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781363 8cf6:A (1.34) BS02 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781364 8cf6:A (1.34) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781365 8cf6:A (1.34) BS04 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781366 8cf6:B (1.34) BS01 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781367 8cf6:B (1.34) BS02 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781368 8cf6:B (1.34) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781369 8cf6:B (1.34) BS04 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781370 8cf6:C (1.34) BS01 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781371 8cf6:C (1.34) BS02 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781372 8cf6:C (1.34) BS03 MFU ? GO:0030246 ... A0A0S4TLR1 37137399
    781373 8cf7:A (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781374 8cf7:B (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781375 8cf7:C (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781376 8cf7:D (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781377 8cf7:E (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781378 8cf7:F (1.14) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 37137399
    781379 8cf8:B (2.2) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    781380 8cf8:C (2.2) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    781381 8cf8:G (2.2) BS01 rna ? GO:0000028 ... P02359 37550453
    781382 8cf8:I (2.2) BS01 rna ? GO:0000049 ... P0A7X3 37550453
    781383 8cf8:J (2.2) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    781384 8cf8:M (2.2) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    781385 8cf8:N (2.2) BS01 rna ? GO:0000028 ... P0AG59 37550453
    781386 8cf8:S (2.2) BS01 rna ? GO:0000028 ... P0A7U3 37550453
    781387 8cf9:A (2.0) BS01 UK6 ? GO:0003677 ... O75469 N/A
    781388 8cfb:A (2.07) BS01 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781389 8cfb:A (2.07) BS02 ADE 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781390 8cfb:A (2.07) BS03 SY4 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781391 8cfb:A (2.07) BS04 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781392 8cfb:B (2.07) BS01 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781393 8cfb:B (2.07) BS02 ADE 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781394 8cfb:B (2.07) BS03 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781395 8cfb:C (2.07) BS01 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781396 8cfb:C (2.07) BS02 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781397 8cfb:C (2.07) BS03 ADE 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781398 8cfb:D (2.07) BS01 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781399 8cfb:D (2.07) BS02 NAD 3.13.2.1 GO:0004013 ... Q9I685 N/A
    781400 8cfb:D (2.07) BS03 ADE 3.13.2.1 GO:0004013 ... Q9I685 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).