SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    782001 8cgd:i (1.98) BS01 rna ? GO:0002181 ... P0AA10 37550453
    782002 8cgd:j (1.98) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    782003 8cgd:k (1.98) BS01 rna ? GO:0002181 ... P02413 37550453
    782004 8cgd:l (1.98) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    782005 8cgd:l (1.98) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    782006 8cgd:m (1.98) BS01 rna ? GO:0000027 ... P0AG44 37550453
    782007 8cgd:n (1.98) BS01 rna ? GO:0002181 ... P0C018 37550453
    782008 8cgd:n (1.98) BS02 rna ? GO:0002181 ... P0C018 37550453
    782009 8cgd:o (1.98) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    782010 8cgd:p (1.98) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    782011 8cgd:q (1.98) BS01 rna ? GO:0002181 ... P0AG48 37550453
    782012 8cgd:r (1.98) BS01 rna ? GO:0002181 ... P61175 37550453
    782013 8cgd:s (1.98) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    782014 8cgd:t (1.98) BS01 rna ? GO:0000027 ... P60624 37550453
    782015 8cgd:u (1.98) BS01 rna ? GO:0000027 ... P68919 37550453
    782016 8cgd:u (1.98) BS02 rna ? GO:0000027 ... P68919 37550453
    782017 8cgd:v (1.98) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    782018 8cgd:v (1.98) BS02 rna ? GO:0000027 ... P0A7L8 37550453
    782019 8cgd:w (1.98) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    782020 8cgd:x (1.98) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    782021 8cgd:y (1.98) BS01 rna ? GO:0000027 ... P0AG51 37550453
    782022 8cgd:y (1.98) BS02 rna ? GO:0000027 ... P0AG51 37550453
    782023 8cgd:z (1.98) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    782024 8cge:A (2.5) BS01 CO N/A N/A N/A 37507458
    782025 8cge:A (2.5) BS02 CO N/A N/A N/A 37507458
    782026 8cge:B (2.5) BS01 CO N/A N/A N/A 37507458
    782027 8cge:B (2.5) BS02 CO N/A N/A N/A 37507458
    782028 8cgi:C (1.89) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    782029 8cgi:G (1.89) BS01 rna ? GO:0000028 ... P02359 37550453
    782030 8cgi:I (1.89) BS01 rna ? GO:0000049 ... P0A7X3 37550453
    782031 8cgi:J (1.89) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    782032 8cgi:M (1.89) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    782033 8cgi:M (1.89) BS02 MG ? GO:0000049 ... P0A7S9 37550453
    782034 8cgi:N (1.89) BS01 peptide ? GO:0000028 ... P0AG59 37550453
    782035 8cgi:N (1.89) BS02 rna ? GO:0000028 ... P0AG59 37550453
    782036 8cgi:S (1.89) BS01 peptide ? GO:0000028 ... P0A7U3 37550453
    782037 8cgi:S (1.89) BS02 rna ? GO:0000028 ... P0A7U3 37550453
    782038 8cgj:B (1.79) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    782039 8cgj:C (1.79) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    782040 8cgj:D (1.79) BS01 rna ? GO:0000028 ... P0A7V8 37550453
    782041 8cgj:E (1.79) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    782042 8cgj:F (1.79) BS01 rna ? GO:0002181 ... P02358 37550453
    782043 8cgj:H (1.79) BS01 rna ? GO:0000028 ... P0A7W7 37550453
    782044 8cgj:K (1.79) BS01 rna ? GO:0002181 ... P0A7R9 37550453
    782045 8cgj:L (1.79) BS01 rna ? GO:0000049 ... P0A7S3 37550453
    782046 8cgj:L (1.79) BS02 5I0 ? GO:0000049 ... P0A7S3 37550453
    782047 8cgj:O (1.79) BS01 rna ? GO:0000028 ... P0ADZ4 37550453
    782048 8cgj:P (1.79) BS01 rna ? GO:0000028 ... P0A7T3 37550453
    782049 8cgj:Q (1.79) BS01 rna ? GO:0000028 ... P0AG63 37550453
    782050 8cgj:R (1.79) BS01 rna ? GO:0002181 ... P0A7T7 37550453
    782051 8cgj:T (1.79) BS01 rna ? GO:0000028 ... P0A7U7 37550453
    782052 8cgj:U (1.79) BS01 rna ? GO:0000028 ... P68679 37550453
    782053 8cgk:0 (1.64) BS01 rna ? GO:0000027 ... P0A7N9 37550453
    782054 8cgk:1 (1.64) BS01 rna ? GO:0002181 ... P0A7P5 37550453
    782055 8cgk:2 (1.64) BS01 rna ? GO:0002181 ... P0A7Q1 37550453
    782056 8cgk:3 (1.64) BS01 rna ? GO:0002181 ... P0A7Q6 37550453
    782057 8cgk:3 (1.64) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    782058 8cgk:c (1.64) BS01 rna ? GO:0000027 ... P60422 37550453
    782059 8cgk:c (1.64) BS02 MG ? GO:0000027 ... P60422 37550453
    782060 8cgk:d (1.64) BS01 rna ? GO:0000027 ... P60438 37550453
    782061 8cgk:e (1.64) BS01 rna ? GO:0001070 ... P60723 37550453
    782062 8cgk:g (1.64) BS01 rna ? GO:0000027 ... P0AG55 37550453
    782063 8cgk:h (1.64) BS01 rna ? GO:0002181 ... P0A7R1 37550453
    782064 8cgk:i (1.64) BS01 rna ? GO:0002181 ... P0AA10 37550453
    782065 8cgk:j (1.64) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    782066 8cgk:k (1.64) BS01 rna ? GO:0002181 ... P02413 37550453
    782067 8cgk:l (1.64) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    782068 8cgk:l (1.64) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    782069 8cgk:l (1.64) BS03 6UQ ? GO:0000027 ... P0ADY7 37550453
    782070 8cgk:m (1.64) BS01 rna ? GO:0000027 ... P0AG44 37550453
    782071 8cgk:o (1.64) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    782072 8cgk:p (1.64) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    782073 8cgk:q (1.64) BS01 rna ? GO:0002181 ... P0AG48 37550453
    782074 8cgk:r (1.64) BS01 rna ? GO:0002181 ... P61175 37550453
    782075 8cgk:s (1.64) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    782076 8cgk:t (1.64) BS01 rna ? GO:0000027 ... P60624 37550453
    782077 8cgk:u (1.64) BS01 rna ? GO:0000027 ... P68919 37550453
    782078 8cgk:u (1.64) BS02 rna ? GO:0000027 ... P68919 37550453
    782079 8cgk:v (1.64) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    782080 8cgk:v (1.64) BS02 rna ? GO:0000027 ... P0A7L8 37550453
    782081 8cgk:w (1.64) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    782082 8cgk:x (1.64) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    782083 8cgk:y (1.64) BS01 rna ? GO:0000027 ... P0AG51 37550453
    782084 8cgk:y (1.64) BS02 rna ? GO:0000027 ... P0AG51 37550453
    782085 8cgk:z (1.64) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    782086 8cgn:0 (2.28) BS01 rna ? GO:0000462 ... P0CX31 38030725
    782087 8cgn:1 (2.28) BS01 rna ? GO:0002181 ... Q3E792 38030725
    782088 8cgn:2 (2.28) BS01 rna ? GO:0003735 ... N/A 38030725
    782089 8cgn:2 (2.28) BS02 ZN ? GO:0003735 ... N/A 38030725
    782090 8cgn:3 (2.28) BS01 rna ? GO:0000028 ... P35997 38030725
    782091 8cgn:4 (2.28) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    782092 8cgn:5 (2.28) BS01 rna ? GO:0003735 ... N/A 38030725
    782093 8cgn:5 (2.28) BS02 ZN ? GO:0003735 ... N/A 38030725
    782094 8cgn:6 (2.28) BS01 rna ? GO:0002181 ... P0CX33 38030725
    782095 8cgn:7 (2.28) BS01 rna ? GO:0001965 ... P38011 38030725
    782096 8cgn:8 (2.28) BS01 rna ? GO:0003735 ... N/A 38030725
    782097 8cgn:A (2.28) BS01 rna ? GO:0000470 ... P26784 38030725
    782098 8cgn:B (2.28) BS01 rna N/A GO:0003735 ... N/A 38030725
    782099 8cgn:B (2.28) BS02 rna N/A GO:0003735 ... N/A 38030725
    782100 8cgn:C (2.28) BS01 rna ? GO:0002181 ... P0CX49 38030725
    782101 8cgn:D (2.28) BS01 rna ? GO:0002181 ... P0CX82 38030725
    782102 8cgn:D (2.28) BS02 rna ? GO:0002181 ... P0CX82 38030725
    782103 8cgn:DD (2.28) BS01 rna ? GO:0000027 ... P05317 38030725
    782104 8cgn:E (2.28) BS01 rna ? GO:0002181 ... P0CX23 38030725
    782105 8cgn:E (2.28) BS02 rna ? GO:0002181 ... P0CX23 38030725
    782106 8cgn:EE (2.28) BS01 rna ? GO:0002181 ... P0CX45 38030725
    782107 8cgn:EE (2.28) BS02 rna ? GO:0002181 ... P0CX45 38030725
    782108 8cgn:Ee (2.28) BS01 rna ? GO:0000027 ... P0CX53 38030725
    782109 8cgn:F (2.28) BS01 rna ? GO:0002181 ... Q02753 38030725
    782110 8cgn:F (2.28) BS02 rna ? GO:0002181 ... Q02753 38030725
    782111 8cgn:FF (2.28) BS01 rna ? GO:0000027 ... P14126 38030725
    782112 8cgn:G (2.28) BS01 rna ? GO:0002181 ... P05749 38030725
    782113 8cgn:GG (2.28) BS01 rna ? GO:0002181 ... P10664 38030725
    782114 8cgn:GG (2.28) BS02 rna ? GO:0002181 ... P10664 38030725
    782115 8cgn:H (2.28) BS01 rna ? GO:0002181 ... P0CX41 38030725
    782116 8cgn:H (2.28) BS02 rna ? GO:0002181 ... P0CX41 38030725
    782117 8cgn:HH (2.28) BS01 rna ? GO:0000027 ... P26321 38030725
    782118 8cgn:HH (2.28) BS02 rna ? GO:0000027 ... P26321 38030725
    782119 8cgn:I (2.28) BS01 rna ? GO:0002181 ... P04449 38030725
    782120 8cgn:II (2.28) BS01 rna ? GO:0000027 ... Q02326 38030725
    782121 8cgn:J (2.28) BS01 rna ? GO:0000027 ... P04456 38030725
    782122 8cgn:J (2.28) BS02 rna ? GO:0000027 ... P04456 38030725
    782123 8cgn:JJ (2.28) BS01 rna ? GO:0000463 ... P05737 38030725
    782124 8cgn:JJ (2.28) BS02 rna ? GO:0000463 ... P05737 38030725
    782125 8cgn:K (2.28) BS01 rna ? GO:0002181 ... P05743 38030725
    782126 8cgn:K (2.28) BS02 rna ? GO:0002181 ... P05743 38030725
    782127 8cgn:KK (2.28) BS01 rna ? GO:0000470 ... P17076 38030725
    782128 8cgn:KK (2.28) BS02 rna ? GO:0000470 ... P17076 38030725
    782129 8cgn:L (2.28) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    782130 8cgn:LL (2.28) BS01 rna ? GO:0003735 ... N/A 38030725
    782131 8cgn:M (2.28) BS01 rna ? GO:0002181 ... P02406 38030725
    782132 8cgn:MM (2.28) BS01 rna ? GO:0000027 ... P41805 38030725
    782133 8cgn:MM (2.28) BS02 rna ? GO:0000027 ... P41805 38030725
    782134 8cgn:MM (2.28) BS03 rna ? GO:0000027 ... P41805 38030725
    782135 8cgn:N (2.28) BS01 rna ? GO:0002181 ... P05747 38030725
    782136 8cgn:NN (2.28) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    782137 8cgn:NN (2.28) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    782138 8cgn:O (2.28) BS01 rna ? GO:0002181 ... P14120 38030725
    782139 8cgn:OO (2.28) BS01 rna ? GO:0002181 ... Q12690 38030725
    782140 8cgn:OO (2.28) BS02 rna ? GO:0002181 ... Q12690 38030725
    782141 8cgn:P (2.28) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    782142 8cgn:PP (2.28) BS01 rna ? GO:0000027 ... P36105 38030725
    782143 8cgn:Q (2.28) BS01 rna ? GO:0002181 ... P38061 38030725
    782144 8cgn:QQ (2.28) BS01 rna ? GO:0002181 ... P05748 38030725
    782145 8cgn:QQ (2.28) BS02 rna ? GO:0002181 ... P05748 38030725
    782146 8cgn:R (2.28) BS01 rna ? GO:0000027 ... P05744 38030725
    782147 8cgn:S (2.28) BS01 rna ? GO:0002181 ... P87262 38030725
    782148 8cgn:S (2.28) BS02 ZN ? GO:0002181 ... P87262 38030725
    782149 8cgn:T (2.28) BS01 rna ? GO:0000463 ... P0CX84 38030725
    782150 8cgn:T (2.28) BS02 rna ? GO:0000463 ... P0CX84 38030725
    782151 8cgn:U (2.28) BS01 rna ? GO:0002181 ... P05745 38030725
    782152 8cgn:V (2.28) BS01 rna ? GO:0000448 ... P49166 38030725
    782153 8cgn:V (2.28) BS02 rna ? GO:0000448 ... P49166 38030725
    782154 8cgn:V (2.28) BS03 ZN ? GO:0000448 ... P49166 38030725
    782155 8cgn:W (2.28) BS01 rna ? GO:0002181 ... P49167 38030725
    782156 8cgn:X (2.28) BS01 rna ? GO:0002181 ... P04650 38030725
    782157 8cgn:X (2.28) BS02 rna ? GO:0002181 ... P04650 38030725
    782158 8cgn:Y (2.28) BS01 rna ? GO:0000027 ... P0CH08 38030725
    782159 8cgn:Y (2.28) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    782160 8cgn:a (2.28) BS01 rna ? GO:0002181 ... P0CX27 38030725
    782161 8cgn:a (2.28) BS02 rna ? GO:0002181 ... P0CX27 38030725
    782162 8cgn:a (2.28) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    782163 8cgn:b (2.28) BS01 rna ? GO:0002181 ... P0CX25 38030725
    782164 8cgn:b (2.28) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    782165 8cgn:d (2.28) BS01 rna ? GO:0000028 ... P32905 38030725
    782166 8cgn:e (2.28) BS01 rna ? GO:0000462 ... P33442 38030725
    782167 8cgn:e (2.28) BS02 rna ? GO:0000462 ... P33442 38030725
    782168 8cgn:f (2.28) BS01 rna ? GO:0000054 ... P25443 38030725
    782169 8cgn:g (2.28) BS01 rna ? GO:0003723 ... N/A 38030725
    782170 8cgn:h (2.28) BS01 rna ? GO:0002181 ... P0CX35 38030725
    782171 8cgn:i (2.28) BS01 rna ? GO:0000028 ... P26783 38030725
    782172 8cgn:i (2.28) BS02 rna ? GO:0000028 ... P26783 38030725
    782173 8cgn:j (2.28) BS01 rna ? GO:0000462 ... P0CX37 38030725
    782174 8cgn:k (2.28) BS01 rna ? GO:0002181 ... P26786 38030725
    782175 8cgn:l (2.28) BS01 rna ? GO:0000462 ... P0CX40 38030725
    782176 8cgn:l (2.28) BS02 rna ? GO:0000462 ... P0CX40 38030725
    782177 8cgn:m (2.28) BS01 rna ? GO:0000462 ... O13516 38030725
    782178 8cgn:n (2.28) BS01 rna ? GO:0000054 ... Q08745 38030725
    782179 8cgn:o (2.28) BS01 rna ? GO:0000028 ... P0CX47 38030725
    782180 8cgn:p (2.28) BS01 rna ? GO:0000462 ... P05756 38030725
    782181 8cgn:p (2.28) BS02 rna ? GO:0000462 ... P05756 38030725
    782182 8cgn:q (2.28) BS01 rna ? GO:0000028 ... P06367 38030725
    782183 8cgn:r (2.28) BS01 rna ? GO:0000028 ... Q01855 38030725
    782184 8cgn:s (2.28) BS01 rna ? GO:0000462 ... P0CX51 38030725
    782185 8cgn:t (2.28) BS01 rna ? GO:0000028 ... P02407 38030725
    782186 8cgn:u (2.28) BS01 rna ? GO:0000054 ... P0CX55 38030725
    782187 8cgn:v (2.28) BS01 rna ? GO:0000028 ... P07280 38030725
    782188 8cgn:w (2.28) BS01 rna ? GO:0003723 ... N/A 38030725
    782189 8cgn:y (2.28) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    782190 8cgn:z (2.28) BS01 rna ? GO:0000462 ... P0CX29 38030725
    782191 8cgo:A (2.65) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 36996715
    782192 8cgo:A (2.65) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 36996715
    782193 8cgo:A (2.65) BS03 XB8 3.1.1.8 GO:0001540 ... P06276 36996715
    782194 8cgo:A (2.65) BS04 SIA 3.1.1.8 GO:0001540 ... P06276 36996715
    782195 8cgp:A (2.62) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    782196 8cgp:A (2.62) BS02 UKG 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    782197 8cgp:B (2.62) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    782198 8cgp:B (2.62) BS02 UKG 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    782199 8cgq:A (2.04) BS01 UDP 2.4.1.- GO:0008194 ... A0A096SRM5 N/A
    782200 8cgr:D (2.12) BS01 rna ? GO:0000028 ... P0A7V8 37550453

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).