SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    782001 8bz8:A (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782002 8bz8:A (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782003 8bz8:B (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782004 8bz8:B (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782005 8bz8:C (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782006 8bz8:C (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782007 8bz8:D (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782008 8bz8:D (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782009 8bz8:E (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782010 8bz8:E (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782011 8bz8:F (2.52) BS01 MG ? GO:0003824 ... A0A401AAP7 39746981
    782012 8bz8:F (2.52) BS02 TRH ? GO:0003824 ... A0A401AAP7 39746981
    782013 8bz9:A (1.3) BS01 peptide ? GO:0001836 ... P31947 37455289
    782014 8bz9:A (1.3) BS02 LF5 ? GO:0001836 ... P31947 37455289
    782015 8bz9:A (1.3) BS03 LF5 ? GO:0001836 ... P31947 37455289
    782016 8bza:A (1.25) BS01 peptide ? GO:0001836 ... P31947 37455289
    782017 8bza:A (1.25) BS02 L1T ? GO:0001836 ... P31947 37455289
    782018 8bzb:A (1.7) BS01 peptide ? GO:0001836 ... P31947 37455289
    782019 8bzb:A (1.7) BS02 GEH ? GO:0001836 ... P31947 37455289
    782020 8bzb:A (1.7) BS03 SH9 ? GO:0001836 ... P31947 37455289
    782021 8bzc:A (1.1) BS01 peptide ? GO:0001836 ... P31947 N/A
    782022 8bzc:A (1.1) BS02 GEH ? GO:0001836 ... P31947 N/A
    782023 8bzc:A (1.1) BS03 SG0 ? GO:0001836 ... P31947 N/A
    782024 8bzd:A (1.5) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782025 8bzd:A (1.5) BS02 SIT N/A GO:0001836 ... P31947 N/A
    782026 8bze:A (1.43) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782027 8bze:A (1.43) BS02 SIY N/A GO:0001836 ... P31947 N/A
    782028 8bzf:A (1.53) BS01 peptide ? GO:0001836 ... P31947 N/A
    782029 8bzf:A (1.53) BS02 SJ4 ? GO:0001836 ... P31947 N/A
    782030 8bzg:A (1.49) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782031 8bzg:A (1.49) BS02 SJC N/A GO:0001836 ... P31947 N/A
    782032 8bzh:A (1.46) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782033 8bzh:A (1.46) BS02 EZ5 N/A GO:0001836 ... P31947 N/A
    782034 8bzi:A (1.72) BS01 SJL 2.7.11.1 GO:0004672 ... Q9Y6E0 37094449
    782035 8bzj:A (2.52) BS01 SJX 2.7.11.1 GO:0004672 ... Q9Y6E0 38422480
    782036 8bzj:B (2.52) BS01 SJX 2.7.11.1 GO:0004672 ... Q9Y6E0 38422480
    782037 8bzl:3 (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P49720 39907714
    782038 8bzl:A (2.14) BS01 peptide ? GO:0000502 ... P25787 39907714
    782039 8bzl:B (2.14) BS01 peptide ? GO:0000502 ... P25789 39907714
    782040 8bzl:B (2.14) BS02 peptide ? GO:0000502 ... P25789 39907714
    782041 8bzl:C (2.14) BS01 peptide ? GO:0000502 ... O14818 39907714
    782042 8bzl:D (2.14) BS01 peptide ? GO:0000502 ... P28066 39907714
    782043 8bzl:E (2.14) BS01 peptide ? GO:0000502 ... P25786 39907714
    782044 8bzl:H (2.14) BS01 MG 3.4.25.1 GO:0000502 ... Q99436 39907714
    782045 8bzl:I (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P49720 39907714
    782046 8bzl:K (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P28074 39907714
    782047 8bzl:O (2.14) BS01 peptide ? GO:0000502 ... P25787 39907714
    782048 8bzl:P (2.14) BS01 peptide ? GO:0000502 ... P25789 39907714
    782049 8bzl:P (2.14) BS02 peptide ? GO:0000502 ... P25789 39907714
    782050 8bzl:Q (2.14) BS01 peptide ? GO:0000502 ... O14818 39907714
    782051 8bzl:R (2.14) BS01 peptide ? GO:0000502 ... P28066 39907714
    782052 8bzl:S (2.14) BS01 peptide ? GO:0000502 ... P25786 39907714
    782053 8bzl:V (2.14) BS01 MG 3.4.25.1 GO:0000502 ... Q99436 39907714
    782054 8bzl:Y (2.14) BS01 MG 3.4.25.1 GO:0000502 ... P28074 39907714
    782055 8bzm:A (2.69) BS01 dna ? GO:0003700 ... P85037 40205063
    782056 8bzm:A (2.69) BS02 dna ? GO:0003700 ... P85037 40205063
    782057 8bzm:B (2.69) BS01 dna ? GO:0003700 ... P32519 40205063
    782058 8bzm:B (2.69) BS02 dna ? GO:0003700 ... P32519 40205063
    782059 8bzm:E (2.69) BS01 dna ? GO:0003700 ... P85037 40205063
    782060 8bzm:E (2.69) BS02 dna ? GO:0003700 ... P85037 40205063
    782061 8bzm:H (2.69) BS01 dna ? GO:0003700 ... P32519 40205063
    782062 8bzm:H (2.69) BS02 dna ? GO:0003700 ... P32519 40205063
    782063 8bzm:I (2.69) BS01 dna ? GO:0003700 ... P85037 40205063
    782064 8bzm:J (2.69) BS01 dna ? GO:0003700 ... P85037 40205063
    782065 8bzn:A (2.19) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 38127066
    782066 8bzn:A (2.19) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 38127066
    782067 8bzp:A (1.86) BS01 SWM 2.7.11.24 GO:0004672 ... P53779 37487500
    782068 8bzp:A (1.86) BS02 C15 2.7.11.24 GO:0004672 ... P53779 37487500
    782069 8bzp:B (1.86) BS01 SWM 2.7.11.24 GO:0004672 ... P53779 37487500
    782070 8bzp:B (1.86) BS02 C15 2.7.11.24 GO:0004672 ... P53779 37487500
    782071 8bzs:A (2.25) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 37277066
    782072 8bzs:A (2.25) BS02 3WL 2.4.1.1 GO:0004645 ... P00489 37277066
    782073 8bzt:A (1.65) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782074 8bzt:A (1.65) BS02 SKR N/A GO:0001836 ... P31947 N/A
    782075 8bzv:A (1.8) BS01 ADN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    782076 8bzv:B (1.8) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    782077 8bzv:B (1.8) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    782078 8bzw:A (1.1) BS01 peptide ? GO:0001836 ... P31947 37455289
    782079 8bzw:A (1.1) BS02 SSX ? GO:0001836 ... P31947 37455289
    782080 8bzw:A (1.1) BS03 GEH ? GO:0001836 ... P31947 37455289
    782081 8bzx:A (2.05) BS01 SW6 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    782082 8bzx:A (2.05) BS02 MG 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    782083 8bzx:B (2.05) BS01 SW6 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    782084 8bzx:B (2.05) BS02 MG 2.2.1.7 GO:0008661 ... A6T5F3 37201323
    782085 8bzy:A (3.24) BS01 SZU ? GO:0005381 ... Q9NP59 36943194
    782086 8bzz:AAA (1.07) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36798036
    782087 8bzz:AAA (1.07) BS02 SVO 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36798036
    782088 8bzz:AAA (1.07) BS03 SVO 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36798036
    782089 8c00:B (2.9) BS01 rna ? GO:0000054 ... P26783 36996028
    782090 8c00:E (2.9) BS01 rna ? GO:0000054 ... Q01855 36996028
    782091 8c00:F (2.9) BS01 rna ? GO:0000462 ... P0CX51 36996028
    782092 8c00:H (2.9) BS01 rna ? GO:0000054 ... P0CX55 36996028
    782093 8c00:I (2.9) BS01 rna ? GO:0000054 ... P07280 36996028
    782094 8c00:K (2.9) BS01 rna ? GO:0002181 ... Q3E792 36996028
    782095 8c00:L (2.9) BS01 rna ? GO:0000028 ... Q3E7X9 36996028
    782096 8c00:Q (2.9) BS01 rna ? GO:0000462 ... P33442 36996028
    782097 8c00:S (2.9) BS01 rna ? GO:0002181 ... P0CX35 36996028
    782098 8c00:T (2.9) BS01 rna ? GO:0000462 ... P0CX37 36996028
    782099 8c00:U (2.9) BS01 rna ? GO:0002181 ... P26786 36996028
    782100 8c00:V (2.9) BS01 rna ? GO:0000462 ... P0CX39 36996028
    782101 8c00:W (2.9) BS01 rna ? GO:0000462 ... O13516 36996028
    782102 8c00:X (2.9) BS01 rna ? GO:0000028 ... P0CX47 36996028
    782103 8c00:Y (2.9) BS01 rna ? GO:0000462 ... P05756 36996028
    782104 8c00:Z (2.9) BS01 rna ? GO:0000028 ... P06367 36996028
    782105 8c00:b (2.9) BS01 rna ? GO:0002181 ... P0C0W1 36996028
    782106 8c00:c (2.9) BS01 rna ? GO:0000462 ... P0CX29 36996028
    782107 8c00:d (2.9) BS01 rna ? GO:0000462 ... P0CX31 36996028
    782108 8c00:f (2.9) BS01 rna ? GO:0000028 ... P35997 36996028
    782109 8c00:g (2.9) BS01 rna ? GO:0002181 ... P0CX33 36996028
    782110 8c00:p (2.9) BS01 rna ? GO:0000056 ... Q99216 36996028
    782111 8c00:r (2.9) BS01 rna 2.7.11.1 GO:0000462 ... P40160 36996028
    782112 8c00:t (2.9) BS01 rna ? GO:0000461 ... Q07381 36996028
    782113 8c01:B (2.7) BS01 rna ? GO:0000054 ... P26783 36996028
    782114 8c01:E (2.7) BS01 rna ? GO:0000054 ... Q01855 36996028
    782115 8c01:F (2.7) BS01 rna ? GO:0000462 ... P0CX51 36996028
    782116 8c01:H (2.7) BS01 rna ? GO:0000054 ... P0CX55 36996028
    782117 8c01:I (2.7) BS01 rna ? GO:0000054 ... P07280 36996028
    782118 8c01:K (2.7) BS01 rna ? GO:0002181 ... Q3E792 36996028
    782119 8c01:L (2.7) BS01 rna ? GO:0000028 ... Q3E7X9 36996028
    782120 8c01:P (2.7) BS01 rna ? GO:0000028 ... P32905 36996028
    782121 8c01:Q (2.7) BS01 rna ? GO:0000462 ... P33442 36996028
    782122 8c01:R (2.7) BS01 rna ? GO:0000054 ... P25443 36996028
    782123 8c01:S (2.7) BS01 rna ? GO:0002181 ... P0CX35 36996028
    782124 8c01:T (2.7) BS01 rna ? GO:0000462 ... P0CX37 36996028
    782125 8c01:U (2.7) BS01 rna ? GO:0002181 ... P26786 36996028
    782126 8c01:V (2.7) BS01 rna ? GO:0000462 ... P0CX39 36996028
    782127 8c01:W (2.7) BS01 rna ? GO:0000462 ... O13516 36996028
    782128 8c01:X (2.7) BS01 rna ? GO:0000028 ... P0CX47 36996028
    782129 8c01:Y (2.7) BS01 rna ? GO:0000462 ... P05756 36996028
    782130 8c01:Z (2.7) BS01 rna ? GO:0000028 ... P06367 36996028
    782131 8c01:b (2.7) BS01 rna ? GO:0002181 ... P0C0W1 36996028
    782132 8c01:c (2.7) BS01 rna ? GO:0000462 ... P0CX29 36996028
    782133 8c01:d (2.7) BS01 rna ? GO:0000462 ... P0CX31 36996028
    782134 8c01:e (2.7) BS01 rna ? GO:0000447 ... P38333 36996028
    782135 8c01:f (2.7) BS01 rna ? GO:0000028 ... P35997 36996028
    782136 8c01:g (2.7) BS01 rna ? GO:0002181 ... P0CX33 36996028
    782137 8c01:o (2.7) BS01 rna 3.1.-.- GO:0000462 ... Q08444 36996028
    782138 8c01:o (2.7) BS02 ZN 3.1.-.- GO:0000462 ... Q08444 36996028
    782139 8c01:p (2.7) BS01 rna ? GO:0000056 ... Q99216 36996028
    782140 8c01:r (2.7) BS01 rna 2.7.11.1 GO:0000462 ... P40160 36996028
    782141 8c01:t (2.7) BS01 rna ? GO:0000461 ... Q07381 36996028
    782142 8c03:A (3.89) BS01 SZU ? GO:0005381 ... Q9NP59 36943194
    782143 8c04:A (1.1) BS01 peptide ? GO:0001836 ... P31947 37455289
    782144 8c04:A (1.1) BS02 MG ? GO:0001836 ... P31947 37455289
    782145 8c04:A (1.1) BS03 GEH ? GO:0001836 ... P31947 37455289
    782146 8c04:A (1.1) BS04 LF5 ? GO:0001836 ... P31947 37455289
    782147 8c05:A (2.5) BS01 FMN 2.7.7.65 GO:0003824 ... A0ACD6BA60 37531459
    782148 8c05:A (2.5) BS02 MG 2.7.7.65 GO:0003824 ... A0ACD6BA60 37531459
    782149 8c06:A (2.7) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    782150 8c06:A (2.7) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    782151 8c06:D (2.7) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    782152 8c06:D (2.7) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37620400
    782153 8c07:B (3.3) BS01 SY8 2.3.2.26 GO:0000209 ... O95071 37620400
    782154 8c07:I (3.3) BS01 SY8 ? N/A P0CG47 37620400
    782155 8c08:A (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    782156 8c08:B (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    782157 8c0a:A (1.7) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 38457493
    782158 8c0a:B (1.7) BS01 T7I 2.7.10.2 GO:0004672 ... O60674 38457493
    782159 8c0c:B (2.2) BS01 T0C ? GO:0003677 ... P37231 37189440
    782160 8c0f:A (2.1005) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34315764
    782161 8c0f:A (2.1005) BS02 CA 3.6.5.- GO:0000226 ... P81947 34315764
    782162 8c0f:B (2.1005) BS01 GDP ? GO:0000226 ... Q6B856 34315764
    782163 8c0f:B (2.1005) BS02 SOZ ? GO:0000226 ... Q6B856 34315764
    782164 8c0f:C (2.1005) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34315764
    782165 8c0f:C (2.1005) BS02 CA 3.6.5.- GO:0000226 ... P81947 34315764
    782166 8c0f:D (2.1005) BS01 GDP ? GO:0000226 ... Q6B856 34315764
    782167 8c0f:F (2.1005) BS01 ACP N/A GO:0036211 ... N/A 34315764
    782168 8c0g:A (1.88) BS01 SRC 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0C6X7 N/A
    782169 8c0g:B (1.88) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0C6X7 N/A
    782170 8c0g:B (1.88) BS02 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0C6X7 N/A
    782171 8c0i:AAA (1.9) BS01 MG 3.4.19.5 GO:0016787 ... P37595 37095066
    782172 8c0i:AAA (1.9) BS02 MG 3.4.19.5 GO:0016787 ... P37595 37095066
    782173 8c0j:A (3.381) BS01 ZN 3.5.1.28 GO:0008745 ... A0A482PQR2 37276423
    782174 8c0j:C (3.381) BS01 ZN 3.5.1.28 GO:0008745 ... A0A482PQR2 37276423
    782175 8c0k:A (1.4) BS01 peptide ? GO:0001836 ... P31947 37455289
    782176 8c0k:A (1.4) BS02 SOI ? GO:0001836 ... P31947 37455289
    782177 8c0l:A (1.6) BS01 peptide N/A GO:0001836 ... P31947 N/A
    782178 8c0l:A (1.6) BS02 FC7 N/A GO:0001836 ... P31947 N/A
    782179 8c0p:A (1.97) BS01 SZI N/A GO:0008658 ... P18357 39060390
    782180 8c0p:B (1.97) BS01 SZI N/A GO:0008658 ... P18357 39060390
    782181 8c0q:A (1.67) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36829558
    782182 8c0q:A (1.67) BS02 SWU 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36829558
    782183 8c0r:A (1.56) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36829558
    782184 8c0r:A (1.56) BS02 SXL 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 36829558
    782185 8c0s:A (2.0) BS01 SYU N/A GO:0008658 ... P18357 39060390
    782186 8c0s:B (2.0) BS01 SYU N/A GO:0008658 ... P18357 39060390
    782187 8c0t:A (1.28) BS01 CA ? GO:0005509 ... A0A1S4NYF2 37798285
    782188 8c0t:A (1.28) BS02 CA ? GO:0005509 ... A0A1S4NYF2 37798285
    782189 8c0u:A (2.112) BS01 ADP 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    782190 8c0u:A (2.112) BS02 AH0 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    782191 8c0u:B (2.112) BS01 ADP 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    782192 8c0u:B (2.112) BS02 VW0 2.7.1.170 GO:0005524 ... Q9I5Q5 37660917
    782193 8c0v:A (4.1) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    782194 8c0v:A (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    782195 8c0v:B (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    782196 8c0v:B (4.1) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    782197 8c0v:B (4.1) BS03 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    782198 8c0v:C (4.1) BS01 peptide 3.6.4.- GO:0005524 ... P24004 37741838
    782199 8c0v:C (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    782200 8c0v:C (4.1) BS03 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).