SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    782401 8che:H (1.49) BS01 peptide N/A N/A N/A 39196196
    782402 8che:L (1.49) BS01 peptide N/A N/A N/A 39196196
    782403 8chf:A (4.25) BS01 29L 2.7.11.1 GO:0000165 ... P04049 38331211
    782404 8chf:B (4.25) BS01 29L 2.7.11.1 GO:0000165 ... P04049 38331211
    782405 8chi:A (1.7) BS01 UMR 5.2.1.8 GO:0003007 ... P62942 37772190
    782406 8chi:A (1.7) BS02 UMR 5.2.1.8 GO:0003007 ... P62942 37772190
    782407 8chi:B (1.7) BS01 UMR 5.2.1.8 GO:0003007 ... P62942 37772190
    782408 8chj:A (1.697) BS01 UQI 5.2.1.8 GO:0003007 ... P62942 37772190
    782409 8chj:B (1.697) BS01 UQI 5.2.1.8 GO:0003007 ... P62942 37772190
    782410 8chj:B (1.697) BS02 UQI 5.2.1.8 GO:0003007 ... P62942 37772190
    782411 8chj:C (1.697) BS01 UQI 5.2.1.8 GO:0003007 ... P62942 37772190
    782412 8chj:D (1.697) BS01 UQI 5.2.1.8 GO:0003007 ... P62942 37772190
    782413 8chk:A (1.55) BS01 UUI 5.2.1.8 GO:0003007 ... P62942 37772190
    782414 8chk:B (1.55) BS01 UUI 5.2.1.8 GO:0003007 ... P62942 37772190
    782415 8chk:C (1.55) BS01 UUI 5.2.1.8 GO:0003007 ... P62942 37772190
    782416 8chl:A (1.4) BS01 USV 5.2.1.8 GO:0003007 ... P62942 37772190
    782417 8chl:B (1.4) BS01 USV 5.2.1.8 GO:0003007 ... P62942 37772190
    782418 8chm:A (1.12) BS01 UT6 5.2.1.8 GO:0003007 ... P62942 37772190
    782419 8chn:A (0.99) BS01 UUI 5.2.1.8 GO:0003755 ... Q13451 37772190
    782420 8chp:A (1.0) BS01 UT6 5.2.1.8 GO:0003755 ... Q13451 37772190
    782421 8chq:A (1.01) BS01 UMR 5.2.1.8 GO:0003755 ... Q13451 37772190
    782422 8chr:A (1.1) BS01 UUI 5.2.1.8 GO:0003755 ... Q13451 37772190
    782423 8chs:A (3.15) BS01 A3P 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    782424 8chs:A (3.15) BS02 CA 2.8.2.8
    3.5.1.-
    GO:0000139 ... P52848 38351061
    782425 8chx:A (1.8) BS01 ZN ? GO:0015031 ... P57069 37095149
    782426 8chx:A (1.8) BS02 ZN ? GO:0015031 ... P57069 37095149
    782427 8chx:B (1.8) BS01 ZN ? GO:0015031 ... P57069 37095149
    782428 8chy:A (2.0) BS01 ZN N/A GO:0006396 ... N/A 38591647
    782429 8chy:A (2.0) BS02 ZN N/A GO:0006396 ... N/A 38591647
    782430 8chy:A (2.0) BS03 ZN N/A GO:0006396 ... N/A 38591647
    782431 8chy:A (2.0) BS04 ZN N/A GO:0006396 ... N/A 38591647
    782432 8chy:A (2.0) BS05 ZN N/A GO:0006396 ... N/A 38591647
    782433 8chy:A (2.0) BS06 ZN N/A GO:0006396 ... N/A 38591647
    782434 8ci0:AAA (1.902) BS01 MG 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782435 8ci0:AAA (1.902) BS02 TPP 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782436 8ci0:AAA (1.902) BS03 TPP 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782437 8ci0:BBB (1.902) BS01 TPP 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782438 8ci0:BBB (1.902) BS02 MG 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782439 8ci0:BBB (1.902) BS03 TPP 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782440 8ci0:CCC (1.902) BS01 UP0 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782441 8ci0:CCC (1.902) BS02 MG 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782442 8ci0:CCC (1.902) BS03 8EL 2.2.1.1 GO:0004802 ... Q7SIC9 36807428
    782443 8ci1:A (2.8) BS01 NCT ? GO:0004888 ... P36544 37749098
    782444 8ci1:B (2.8) BS01 NCT ? GO:0004888 ... P36544 37749098
    782445 8ci1:C (2.8) BS01 NCT ? GO:0004888 ... P36544 37749098
    782446 8ci1:D (2.8) BS01 NCT ? GO:0004888 ... P36544 37749098
    782447 8ci1:E (2.8) BS01 NCT ? GO:0004888 ... P36544 37749098
    782448 8ci5:A (3.2) BS01 rna 2.7.7.48 GO:0001172 ... A0A0P0ALW1 37549153
    782449 8ci6:A (1.199) BS01 ALX ? GO:0015833 ... B9JXG4 38058289
    782450 8ci6:A (1.199) BS02 BNX ? GO:0015833 ... B9JXG4 38058289
    782451 8ci9:C (1.41) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 N/A
    782452 8cib:D (1.78) BS01 LYS 3.5.2.19 GO:0016787 ... A0A072ZIR4 37250041
    782453 8cib:F (1.78) BS01 LYS 3.5.2.19 GO:0016787 ... A0A072ZIR4 37250041
    782454 8cic:A (2.102) BS01 U30 ? GO:0001609 ... P0ABE7
    P29274
    37264098
    782455 8cic:A (2.102) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    782456 8cic:A (2.102) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    782457 8cic:A (2.102) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    782458 8cic:A (2.102) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    782459 8cie:A (2.2) BS01 US0 2.7.11.22 GO:0004672 ... O76039 37084253
    782460 8cig:A (1.4) BS01 CA N/A GO:0006396 ... N/A 38591647
    782461 8cij:A (2.821) BS01 USF 2.7.11.1 GO:0004672 ... Q92918 37531921
    782462 8cip:A (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782463 8cip:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782464 8cip:A (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782465 8cip:B (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782466 8cip:B (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782467 8cip:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782468 8cip:C (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782469 8cip:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782470 8cip:C (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782471 8cip:D (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782472 8cip:D (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782473 8cip:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... A0A0I9QGZ2 N/A
    782474 8cir:A (1.85) BS01 peptide ? GO:0003779 ... P26038 37866628
    782475 8cir:B (1.85) BS01 peptide ? GO:0003779 ... P26038 37866628
    782476 8cis:A (1.52) BS01 peptide ? GO:0003779 ... P26038 37866628
    782477 8cis:A (1.52) BS02 peptide ? GO:0003779 ... P26038 37866628
    782478 8cis:A (1.52) BS03 peptide ? GO:0003779 ... P26038 37866628
    782479 8civ:0 (2.47) BS01 rna ? GO:0000462 ... P0CX31 38030725
    782480 8civ:1 (2.47) BS01 rna ? GO:0002181 ... Q3E792 38030725
    782481 8civ:2 (2.47) BS01 rna ? GO:0003735 ... N/A 38030725
    782482 8civ:2 (2.47) BS02 ZN ? GO:0003735 ... N/A 38030725
    782483 8civ:3 (2.47) BS01 rna ? GO:0000028 ... P35997 38030725
    782484 8civ:4 (2.47) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    782485 8civ:5 (2.47) BS01 rna ? GO:0003735 ... N/A 38030725
    782486 8civ:5 (2.47) BS02 ZN ? GO:0003735 ... N/A 38030725
    782487 8civ:6 (2.47) BS01 rna ? GO:0002181 ... P0CX33 38030725
    782488 8civ:7 (2.47) BS01 rna ? GO:0001965 ... P38011 38030725
    782489 8civ:8 (2.47) BS01 rna ? GO:0003735 ... N/A 38030725
    782490 8civ:A (2.47) BS01 rna ? GO:0000470 ... P26784 38030725
    782491 8civ:Aa (2.47) BS01 rna ? GO:0003924 ... N/A 38030725
    782492 8civ:Aa (2.47) BS02 rna ? GO:0003924 ... N/A 38030725
    782493 8civ:Aa (2.47) BS03 rna ? GO:0003924 ... N/A 38030725
    782494 8civ:Aa (2.47) BS04 SO1 ? GO:0003924 ... N/A 38030725
    782495 8civ:Aa (2.47) BS05 GDP ? GO:0003924 ... N/A 38030725
    782496 8civ:B (2.47) BS01 rna ? GO:0000448 ... P05740 38030725
    782497 8civ:B (2.47) BS02 rna ? GO:0000448 ... P05740 38030725
    782498 8civ:C (2.47) BS01 rna ? GO:0002181 ... P0CX49 38030725
    782499 8civ:D (2.47) BS01 rna ? GO:0002181 ... P0CX82 38030725
    782500 8civ:D (2.47) BS02 rna ? GO:0002181 ... P0CX82 38030725
    782501 8civ:DD (2.47) BS01 rna ? GO:0000027 ... P05317 38030725
    782502 8civ:E (2.47) BS01 rna ? GO:0002181 ... P0CX23 38030725
    782503 8civ:E (2.47) BS02 rna ? GO:0002181 ... P0CX23 38030725
    782504 8civ:EE (2.47) BS01 rna ? GO:0002181 ... P0CX45 38030725
    782505 8civ:EE (2.47) BS02 rna ? GO:0002181 ... P0CX45 38030725
    782506 8civ:Ee (2.47) BS01 rna ? GO:0000027 ... P0CX53 38030725
    782507 8civ:F (2.47) BS01 rna ? GO:0002181 ... Q02753 38030725
    782508 8civ:F (2.47) BS02 rna ? GO:0002181 ... Q02753 38030725
    782509 8civ:FF (2.47) BS01 rna ? GO:0000027 ... P14126 38030725
    782510 8civ:G (2.47) BS01 rna ? GO:0002181 ... P05749 38030725
    782511 8civ:GG (2.47) BS01 rna ? GO:0002181 ... P10664 38030725
    782512 8civ:GG (2.47) BS02 rna ? GO:0002181 ... P10664 38030725
    782513 8civ:H (2.47) BS01 rna ? GO:0002181 ... P0CX41 38030725
    782514 8civ:HH (2.47) BS01 rna ? GO:0000027 ... P26321 38030725
    782515 8civ:HH (2.47) BS02 rna ? GO:0000027 ... P26321 38030725
    782516 8civ:I (2.47) BS01 rna ? GO:0002181 ... P04449 38030725
    782517 8civ:II (2.47) BS01 rna ? GO:0000027 ... Q02326 38030725
    782518 8civ:J (2.47) BS01 rna ? GO:0000027 ... P04456 38030725
    782519 8civ:J (2.47) BS02 rna ? GO:0000027 ... P04456 38030725
    782520 8civ:JJ (2.47) BS01 rna ? GO:0000463 ... P05737 38030725
    782521 8civ:JJ (2.47) BS02 rna ? GO:0000463 ... P05737 38030725
    782522 8civ:K (2.47) BS01 rna ? GO:0002181 ... P05743 38030725
    782523 8civ:K (2.47) BS02 rna ? GO:0002181 ... P05743 38030725
    782524 8civ:KK (2.47) BS01 rna ? GO:0000470 ... P17076 38030725
    782525 8civ:KK (2.47) BS02 rna ? GO:0000470 ... P17076 38030725
    782526 8civ:L (2.47) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    782527 8civ:LL (2.47) BS01 rna ? GO:0003735 ... N/A 38030725
    782528 8civ:M (2.47) BS01 rna ? GO:0002181 ... P02406 38030725
    782529 8civ:MM (2.47) BS01 rna ? GO:0000027 ... P41805 38030725
    782530 8civ:MM (2.47) BS02 rna ? GO:0000027 ... P41805 38030725
    782531 8civ:N (2.47) BS01 rna ? GO:0002181 ... P05747 38030725
    782532 8civ:NN (2.47) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    782533 8civ:NN (2.47) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    782534 8civ:NN (2.47) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    782535 8civ:O (2.47) BS01 rna ? GO:0002181 ... P14120 38030725
    782536 8civ:OO (2.47) BS01 rna ? GO:0002181 ... Q12690 38030725
    782537 8civ:OO (2.47) BS02 rna ? GO:0002181 ... Q12690 38030725
    782538 8civ:P (2.47) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    782539 8civ:PP (2.47) BS01 rna ? GO:0000027 ... P36105 38030725
    782540 8civ:Q (2.47) BS01 rna ? GO:0002181 ... P38061 38030725
    782541 8civ:QQ (2.47) BS01 rna ? GO:0002181 ... P05748 38030725
    782542 8civ:QQ (2.47) BS02 rna ? GO:0002181 ... P05748 38030725
    782543 8civ:R (2.47) BS01 rna ? GO:0000027 ... P05744 38030725
    782544 8civ:S (2.47) BS01 rna ? GO:0002181 ... P87262 38030725
    782545 8civ:S (2.47) BS02 ZN ? GO:0002181 ... P87262 38030725
    782546 8civ:T (2.47) BS01 rna ? GO:0000463 ... P0CX84 38030725
    782547 8civ:T (2.47) BS02 rna ? GO:0000463 ... P0CX84 38030725
    782548 8civ:U (2.47) BS01 rna ? GO:0002181 ... P05745 38030725
    782549 8civ:V (2.47) BS01 rna ? GO:0000448 ... P49166 38030725
    782550 8civ:V (2.47) BS02 rna ? GO:0000448 ... P49166 38030725
    782551 8civ:V (2.47) BS03 ZN ? GO:0000448 ... P49166 38030725
    782552 8civ:W (2.47) BS01 rna ? GO:0002181 ... P49167 38030725
    782553 8civ:X (2.47) BS01 rna ? GO:0002181 ... P04650 38030725
    782554 8civ:X (2.47) BS02 rna ? GO:0002181 ... P04650 38030725
    782555 8civ:Y (2.47) BS01 rna ? GO:0000027 ... P0CH08 38030725
    782556 8civ:Y (2.47) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    782557 8civ:a (2.47) BS01 rna ? GO:0002181 ... P0CX27 38030725
    782558 8civ:a (2.47) BS02 rna ? GO:0002181 ... P0CX27 38030725
    782559 8civ:a (2.47) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    782560 8civ:b (2.47) BS01 rna ? GO:0002181 ... P0CX25 38030725
    782561 8civ:b (2.47) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    782562 8civ:d (2.47) BS01 rna ? GO:0000028 ... P32905 38030725
    782563 8civ:e (2.47) BS01 rna ? GO:0000462 ... P33442 38030725
    782564 8civ:f (2.47) BS01 rna ? GO:0000054 ... P25443 38030725
    782565 8civ:g (2.47) BS01 rna ? GO:0003723 ... N/A 38030725
    782566 8civ:h (2.47) BS01 rna ? GO:0002181 ... P0CX35 38030725
    782567 8civ:i (2.47) BS01 rna ? GO:0000028 ... P26783 38030725
    782568 8civ:j (2.47) BS01 rna ? GO:0000462 ... P0CX37 38030725
    782569 8civ:k (2.47) BS01 rna ? GO:0002181 ... P26786 38030725
    782570 8civ:l (2.47) BS01 rna ? GO:0000462 ... P0CX40 38030725
    782571 8civ:l (2.47) BS02 rna ? GO:0000462 ... P0CX40 38030725
    782572 8civ:m (2.47) BS01 rna ? GO:0000462 ... O13516 38030725
    782573 8civ:n (2.47) BS01 rna ? GO:0000054 ... Q08745 38030725
    782574 8civ:o (2.47) BS01 rna ? GO:0000028 ... P0CX47 38030725
    782575 8civ:p (2.47) BS01 rna ? GO:0000462 ... P05756 38030725
    782576 8civ:p (2.47) BS02 rna ? GO:0000462 ... P05756 38030725
    782577 8civ:q (2.47) BS01 rna ? GO:0000028 ... P06367 38030725
    782578 8civ:r (2.47) BS01 rna ? GO:0000028 ... Q01855 38030725
    782579 8civ:s (2.47) BS01 rna ? GO:0000462 ... P0CX51 38030725
    782580 8civ:t (2.47) BS01 rna ? GO:0000028 ... P02407 38030725
    782581 8civ:u (2.47) BS01 rna ? GO:0000054 ... P0CX55 38030725
    782582 8civ:v (2.47) BS01 rna ? GO:0000028 ... P07280 38030725
    782583 8civ:w (2.47) BS01 rna ? GO:0003723 ... N/A 38030725
    782584 8civ:y (2.47) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    782585 8civ:z (2.47) BS01 rna ? GO:0000462 ... P0CX29 38030725
    782586 8ciw:A (1.93) BS01 FAD ? GO:0000166 ... A0A1H5ILA2 37315145
    782587 8ciw:A (1.93) BS02 ZKK ? GO:0000166 ... A0A1H5ILA2 37315145
    782588 8ciw:A (1.93) BS03 FAD ? GO:0000166 ... A0A1H5ILA2 37315145
    782589 8ciw:B (1.93) BS01 FAD ? GO:0000166 ... A0A1H5ILA2 37315145
    782590 8ciw:B (1.93) BS02 FAD ? GO:0000166 ... A0A1H5ILA2 37315145
    782591 8ciw:B (1.93) BS03 ZKK ? GO:0000166 ... A0A1H5ILA2 37315145
    782592 8cix:A (1.76) BS01 peptide ? GO:0003677 ... P0A988 38278788
    782593 8cix:A (1.76) BS02 CA ? GO:0003677 ... P0A988 38278788
    782594 8cix:A (1.76) BS03 CA ? GO:0003677 ... P0A988 38278788
    782595 8cix:A (1.76) BS04 MG ? GO:0003677 ... P0A988 38278788
    782596 8cix:A (1.76) BS05 MG ? GO:0003677 ... P0A988 38278788
    782597 8ciy:A (1.54) BS01 peptide ? GO:0003677 ... P0A988 38278788
    782598 8ciy:A (1.54) BS02 CA ? GO:0003677 ... P0A988 38278788
    782599 8ciy:A (1.54) BS03 MG ? GO:0003677 ... P0A988 38278788
    782600 8ciy:A (1.54) BS04 MG ? GO:0003677 ... P0A988 38278788

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).