SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    782801 8c3a:CY (3.0) BS01 rna ? GO:0003674 ... A0A1D8PN83 N/A
    782802 8c3a:CY (3.0) BS02 MG ? GO:0003674 ... A0A1D8PN83 N/A
    782803 8c3a:CZ (3.0) BS01 rna ? GO:0000028 ... Q5ADQ6 N/A
    782804 8c3a:D (3.0) BS01 rna ? GO:0003735 ... P40910 N/A
    782805 8c3a:DA (3.0) BS01 rna ? GO:0000462 ... A0A1D8PPE0 N/A
    782806 8c3a:DB (3.0) BS01 rna ? GO:0000028 ... A0A1D8PDT3 N/A
    782807 8c3a:DB (3.0) BS02 MG ? GO:0000028 ... A0A1D8PDT3 N/A
    782808 8c3a:DC (3.0) BS01 rna ? GO:0003723 ... A0A1D8PK22 N/A
    782809 8c3a:DD (3.0) BS01 rna ? GO:0000462 ... A0A1D8PCW6 N/A
    782810 8c3a:DE (3.0) BS01 rna ? GO:0000028 ... A0A1D8PEY9 N/A
    782811 8c3a:DF (3.0) BS01 rna ? GO:0000054 ... A0A1D8PQQ5 N/A
    782812 8c3a:DG (3.0) BS01 rna ? GO:0003674 ... A0A1D8PK61 N/A
    782813 8c3a:DG (3.0) BS02 MG ? GO:0003674 ... A0A1D8PK61 N/A
    782814 8c3a:DG (3.0) BS03 MG ? GO:0003674 ... A0A1D8PK61 N/A
    782815 8c3a:DH (3.0) BS01 rna ? GO:0000462 ... Q5A389 N/A
    782816 8c3a:DI (3.0) BS01 rna ? GO:0000447 ... A0A1D8PCG7 N/A
    782817 8c3a:DJ (3.0) BS01 rna ? GO:0003674 ... Q96W54 N/A
    782818 8c3a:DJ (3.0) BS02 MG ? GO:0003674 ... Q96W54 N/A
    782819 8c3a:DK (3.0) BS01 rna ? GO:0003674 ... A0A1D8PDU3 N/A
    782820 8c3a:DL (3.0) BS01 rna ? GO:0002181 ... Q5A7K0 N/A
    782821 8c3a:DM (3.0) BS01 rna ? GO:0003674 ... A0A1D8PNQ6 N/A
    782822 8c3a:DN (3.0) BS01 rna ? GO:0003729 ... Q5ALV6 N/A
    782823 8c3a:DN (3.0) BS02 ZN ? GO:0003729 ... Q5ALV6 N/A
    782824 8c3a:DO (3.0) BS01 rna ? GO:0003674 ... A0A1D8PTI7 N/A
    782825 8c3a:DP (3.0) BS01 rna ? GO:0000028 ... A0A1D8PQN0 N/A
    782826 8c3a:DQ (3.0) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    782827 8c3a:DQ (3.0) BS02 MG ? GO:0002181 ... A0A1D8PTR4 N/A
    782828 8c3a:DQ (3.0) BS03 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    782829 8c3a:DR (3.0) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    782830 8c3a:DS (3.0) BS01 rna ? GO:0000028 ... Q5A109 N/A
    782831 8c3a:DS (3.0) BS02 ZN ? GO:0000028 ... Q5A109 N/A
    782832 8c3a:DT (3.0) BS01 rna ? GO:0001403 ... P83774 N/A
    782833 8c3a:E (3.0) BS01 rna ? GO:0000054 ... Q5A900 N/A
    782834 8c3a:F (3.0) BS01 rna ? GO:0003723 ... A0A1D8PSV5 N/A
    782835 8c3a:G (3.0) BS01 rna ? GO:0002181 ... A0A1D8PCI6 N/A
    782836 8c3a:G (3.0) BS02 MG ? GO:0002181 ... A0A1D8PCI6 N/A
    782837 8c3a:H (3.0) BS01 rna ? GO:0003723 ... Q5AG43 N/A
    782838 8c3a:H (3.0) BS02 MG ? GO:0003723 ... Q5AG43 N/A
    782839 8c3a:I (3.0) BS01 rna ? GO:0003674 ... A0A1D8PL99 N/A
    782840 8c3a:J (3.0) BS01 rna ? GO:0003735 ... Q5AJ93 N/A
    782841 8c3a:J (3.0) BS02 MG ? GO:0003735 ... Q5AJ93 N/A
    782842 8c3a:K (3.0) BS01 rna ? GO:0002181 ... Q59T44 N/A
    782843 8c3a:K (3.0) BS02 rna ? GO:0002181 ... Q59T44 N/A
    782844 8c3a:L (3.0) BS01 rna ? GO:0003723 ... A0A1D8PGY8 N/A
    782845 8c3a:L1 (3.0) BS01 rna ? GO:0000055 ... Q9UVJ4 N/A
    782846 8c3a:M (3.0) BS01 rna ? GO:0003674 ... A0A1D8PI15 N/A
    782847 8c3a:N (3.0) BS01 rna ? GO:0003674 ... A0A1D8PN83 N/A
    782848 8c3a:O (3.0) BS01 rna ? GO:0000028 ... Q5ADQ6 N/A
    782849 8c3a:P (3.0) BS01 rna ? GO:0000462 ... A0A1D8PPE0 N/A
    782850 8c3a:P0 (3.0) BS01 rna ? GO:0000027 ... G1UA71 N/A
    782851 8c3a:Q (3.0) BS01 rna ? GO:0000028 ... A0A1D8PDT3 N/A
    782852 8c3a:Q (3.0) BS02 MG ? GO:0000028 ... A0A1D8PDT3 N/A
    782853 8c3a:R (3.0) BS01 rna ? GO:0003723 ... A0A1D8PK22 N/A
    782854 8c3a:R (3.0) BS02 rna ? GO:0003723 ... A0A1D8PK22 N/A
    782855 8c3a:R (3.0) BS03 MG ? GO:0003723 ... A0A1D8PK22 N/A
    782856 8c3a:S (3.0) BS01 rna ? GO:0000462 ... A0A1D8PCW6 N/A
    782857 8c3a:T (3.0) BS01 rna ? GO:0000028 ... A0A1D8PEY9 N/A
    782858 8c3a:U (3.0) BS01 rna ? GO:0000054 ... A0A1D8PQQ5 N/A
    782859 8c3a:V (3.0) BS01 rna ? GO:0003674 ... A0A1D8PK61 N/A
    782860 8c3a:W (3.0) BS01 rna ? GO:0000462 ... Q5A389 N/A
    782861 8c3a:X (3.0) BS01 rna ? GO:0000447 ... A0A1D8PCG7 N/A
    782862 8c3a:Y (3.0) BS01 rna ? GO:0003674 ... Q96W54 N/A
    782863 8c3a:Y (3.0) BS02 MG ? GO:0003674 ... Q96W54 N/A
    782864 8c3a:Z (3.0) BS01 rna ? GO:0003674 ... A0A1D8PDU3 N/A
    782865 8c3a:a (3.0) BS01 rna ? GO:0002181 ... Q5A7K0 N/A
    782866 8c3a:b (3.0) BS01 rna ? GO:0003674 ... A0A1D8PNQ6 N/A
    782867 8c3a:c (3.0) BS01 rna ? GO:0003729 ... Q5ALV6 N/A
    782868 8c3a:c (3.0) BS02 ZN ? GO:0003729 ... Q5ALV6 N/A
    782869 8c3a:d (3.0) BS01 rna ? GO:0003674 ... A0A1D8PTI7 N/A
    782870 8c3a:e (3.0) BS01 rna ? GO:0000028 ... A0A1D8PQN0 N/A
    782871 8c3a:f (3.0) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    782872 8c3a:f (3.0) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    782873 8c3a:g (3.0) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    782874 8c3a:h (3.0) BS01 rna ? GO:0000028 ... Q5A109 N/A
    782875 8c3a:i (3.0) BS01 rna ? GO:0000723 ... A0A1D8PK71 N/A
    782876 8c3a:i (3.0) BS02 rna ? GO:0000723 ... A0A1D8PK71 N/A
    782877 8c3a:i (3.0) BS03 MG ? GO:0000723 ... A0A1D8PK71 N/A
    782878 8c3a:i (3.0) BS04 MG ? GO:0000723 ... A0A1D8PK71 N/A
    782879 8c3a:j (3.0) BS01 rna ? GO:0002181 ... A0A1D8PF08 N/A
    782880 8c3a:j (3.0) BS02 rna ? GO:0002181 ... A0A1D8PF08 N/A
    782881 8c3a:j (3.0) BS03 MG ? GO:0002181 ... A0A1D8PF08 N/A
    782882 8c3a:j (3.0) BS04 MG ? GO:0002181 ... A0A1D8PF08 N/A
    782883 8c3a:k (3.0) BS01 rna ? GO:0000027 ... Q59LS1 N/A
    782884 8c3a:k (3.0) BS02 MG ? GO:0000027 ... Q59LS1 N/A
    782885 8c3a:k (3.0) BS03 MG ? GO:0000027 ... Q59LS1 N/A
    782886 8c3a:k (3.0) BS04 MG ? GO:0000027 ... Q59LS1 N/A
    782887 8c3a:k (3.0) BS05 MG ? GO:0000027 ... Q59LS1 N/A
    782888 8c3a:l (3.0) BS01 rna ? GO:0003723 ... A0A1D8PFV1 N/A
    782889 8c3a:l (3.0) BS02 rna ? GO:0003723 ... A0A1D8PFV1 N/A
    782890 8c3a:l1 (3.0) BS01 rna ? GO:0000055 ... Q9UVJ4 N/A
    782891 8c3a:m (3.0) BS01 rna ? GO:0000027 ... Q5AGZ7 N/A
    782892 8c3a:m (3.0) BS02 rna ? GO:0000027 ... Q5AGZ7 N/A
    782893 8c3a:n (3.0) BS01 rna ? GO:0002181 ... A0A1D8PCX8 N/A
    782894 8c3a:o (3.0) BS01 rna ? GO:0000463 ... A0A1D8PDL6 N/A
    782895 8c3a:o (3.0) BS02 rna ? GO:0000463 ... A0A1D8PDL6 N/A
    782896 8c3a:p (3.0) BS01 rna ? GO:0000470 ... Q5ANA1 N/A
    782897 8c3a:p (3.0) BS02 rna ? GO:0000470 ... Q5ANA1 N/A
    782898 8c3a:p0 (3.0) BS01 rna ? GO:0000027 ... G1UA71 N/A
    782899 8c3a:q (3.0) BS01 rna ? GO:0002181 ... Q5AEN2 N/A
    782900 8c3a:r (3.0) BS01 rna ? GO:0003735 ... Q5AIB8 N/A
    782901 8c3a:r (3.0) BS02 rna ? GO:0003735 ... Q5AIB8 N/A
    782902 8c3a:r (3.0) BS03 MG ? GO:0003735 ... Q5AIB8 N/A
    782903 8c3a:r (3.0) BS04 MG ? GO:0003735 ... Q5AIB8 N/A
    782904 8c3a:s (3.0) BS01 rna ? GO:0003723 ... A0A1D8PHW1 N/A
    782905 8c3a:s (3.0) BS02 rna ? GO:0003723 ... A0A1D8PHW1 N/A
    782906 8c3a:t (3.0) BS01 rna ? GO:0003723 ... O59931 N/A
    782907 8c3a:t (3.0) BS02 rna ? GO:0003723 ... O59931 N/A
    782908 8c3a:u (3.0) BS01 rna ? GO:0003723 ... A0A1D8PFL9 N/A
    782909 8c3a:v (3.0) BS01 rna ? GO:0002181 ... Q5A6R1 N/A
    782910 8c3a:v (3.0) BS02 rna ? GO:0002181 ... Q5A6R1 N/A
    782911 8c3a:v (3.0) BS03 MG ? GO:0002181 ... Q5A6R1 N/A
    782912 8c3a:w (3.0) BS01 rna ? GO:0003729 ... Q5AB87 N/A
    782913 8c3a:w (3.0) BS02 MG ? GO:0003729 ... Q5AB87 N/A
    782914 8c3a:x (3.0) BS01 rna ? GO:0002181 ... Q59TE0 N/A
    782915 8c3a:x (3.0) BS02 rna ? GO:0002181 ... Q59TE0 N/A
    782916 8c3a:x (3.0) BS03 MG ? GO:0002181 ... Q59TE0 N/A
    782917 8c3a:x (3.0) BS04 MG ? GO:0002181 ... Q59TE0 N/A
    782918 8c3a:y (3.0) BS01 rna ? GO:0002181 ... A0A1D8PK43 N/A
    782919 8c3a:z (3.0) BS01 rna ? GO:0003723 ... A0A1D8PK40 N/A
    782920 8c3a:z (3.0) BS02 rna ? GO:0003723 ... A0A1D8PK40 N/A
    782921 8c3a:z (3.0) BS03 MG ? GO:0003723 ... A0A1D8PK40 N/A
    782922 8c3b:BBB (1.24) BS01 T9L 4.6.1.18 GO:0003676 ... P61823 N/A
    782923 8c3b:BBB (1.24) BS02 T9U 4.6.1.18 GO:0003676 ... P61823 N/A
    782924 8c3c:A (1.6) BS01 peptide ? GO:0001836 ... P31947 37350830
    782925 8c3c:A (1.6) BS02 FSC ? GO:0001836 ... P31947 37350830
    782926 8c3c:A (1.6) BS03 MG ? GO:0001836 ... P31947 37350830
    782927 8c3d:A (2.0) BS01 peptide 3.4.22.38 GO:0006508 ... P43235 37853179
    782928 8c3d:A (2.0) BS02 CA 3.4.22.38 GO:0006508 ... P43235 37853179
    782929 8c3f:L (2.6) BS01 BCL ? GO:0009772 ... Q3J1A5 36837660
    782930 8c3f:L (2.6) BS02 BPB ? GO:0009772 ... Q3J1A5 36837660
    782931 8c3f:L (2.6) BS03 U10 ? GO:0009772 ... Q3J1A5 36837660
    782932 8c3f:L (2.6) BS04 BCL ? GO:0009772 ... Q3J1A5 36837660
    782933 8c3f:L (2.6) BS05 BCL ? GO:0009772 ... Q3J1A5 36837660
    782934 8c3f:L (2.6) BS06 BPB ? GO:0009772 ... Q3J1A5 36837660
    782935 8c3f:L (2.6) BS07 FE ? GO:0009772 ... Q3J1A5 36837660
    782936 8c3f:L (2.6) BS08 U10 ? GO:0009772 ... Q3J1A5 36837660
    782937 8c3f:M (2.6) BS01 BPB ? GO:0009772 ... Q3J1A6 36837660
    782938 8c3f:M (2.6) BS02 BCL ? GO:0009772 ... Q3J1A6 36837660
    782939 8c3f:M (2.6) BS03 BCL ? GO:0009772 ... Q3J1A6 36837660
    782940 8c3f:M (2.6) BS04 BCL ? GO:0009772 ... Q3J1A6 36837660
    782941 8c3f:M (2.6) BS05 BPB ? GO:0009772 ... Q3J1A6 36837660
    782942 8c3f:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837660
    782943 8c3f:M (2.6) BS07 U10 ? GO:0009772 ... Q3J1A6 36837660
    782944 8c3f:M (2.6) BS08 SPN ? GO:0009772 ... Q3J1A6 36837660
    782945 8c3g:A (2.08) BS01 QS0 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782946 8c3g:B (2.08) BS01 QS0 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782947 8c3g:C (2.08) BS01 QS0 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782948 8c3g:D (2.08) BS01 QS0 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782949 8c3h:A (1.71) BS01 peptide ? N/A A4TVL0 36701892
    782950 8c3h:A (1.71) BS02 ZN ? N/A A4TVL0 36701892
    782951 8c3h:B (1.71) BS01 peptide ? N/A A4TVL0 36701892
    782952 8c3h:B (1.71) BS02 ZN ? N/A A4TVL0 36701892
    782953 8c3h:C (1.71) BS01 ZN ? N/A A4TVL0 36701892
    782954 8c3i:A (2.1) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 N/A
    782955 8c3i:B (2.1) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 N/A
    782956 8c3j:C (3.02) BS01 TKI ? N/A P51587 38075664
    782957 8c3m:A (2.6) BS01 FAD 1.18.1.2 GO:0004324 ... Q81IK1 37371954
    782958 8c3m:A (2.6) BS02 FAD 1.18.1.2 GO:0004324 ... Q81IK1 37371954
    782959 8c3m:B (2.6) BS01 FAD 1.18.1.2 GO:0004324 ... Q81IK1 37371954
    782960 8c3m:B (2.6) BS02 FAD 1.18.1.2 GO:0004324 ... Q81IK1 37371954
    782961 8c3n:A (1.21) BS01 peptide ? GO:0003677 ... O74036 38075664
    782962 8c3n:A (1.21) BS02 ADP ? GO:0003677 ... O74036 38075664
    782963 8c3n:A (1.21) BS03 RF6 ? GO:0003677 ... O74036 38075664
    782964 8c3o:A (2.47) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    782965 8c3o:A (2.47) BS02 T8R 3.1.4.39 GO:0003676 ... Q13822 37976710
    782966 8c3o:A (2.47) BS03 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782967 8c3o:A (2.47) BS04 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782968 8c3o:A (2.47) BS05 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782969 8c3o:B (2.47) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    782970 8c3o:B (2.47) BS02 T8R 3.1.4.39 GO:0003676 ... Q13822 37976710
    782971 8c3o:B (2.47) BS03 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782972 8c3o:B (2.47) BS04 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782973 8c3o:B (2.47) BS05 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782974 8c3p:A (2.38) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    782975 8c3p:A (2.38) BS02 NKP 3.1.4.39 GO:0003676 ... Q13822 37976710
    782976 8c3p:A (2.38) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782977 8c3p:A (2.38) BS04 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782978 8c3p:A (2.38) BS05 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782979 8c3p:A (2.38) BS06 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782980 8c3p:B (2.38) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    782981 8c3p:B (2.38) BS02 NKP 3.1.4.39 GO:0003676 ... Q13822 37976710
    782982 8c3p:B (2.38) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782983 8c3p:B (2.38) BS04 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    782984 8c3p:B (2.38) BS05 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782985 8c3p:B (2.38) BS06 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    782986 8c3q:A (2.32) BS01 RUT 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782987 8c3q:B (2.32) BS01 RUT 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782988 8c3r:A (2.06) BS01 R7O 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782989 8c3r:B (2.06) BS01 R7O 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 N/A
    782990 8c3u:A (1.945) BS01 T9C ? GO:0005125 ... P01584 37679328
    782991 8c3u:B (1.945) BS01 T9C ? GO:0005125 ... P01584 37679328
    782992 8c3u:B (1.945) BS02 T9C ? GO:0005125 ... P01584 37679328
    782993 8c3w:A (1.6) BS01 HEM N/A N/A N/A 37341421
    782994 8c3z:A (1.4) BS01 peptide ? GO:0001836 ... P31947 37224961
    782995 8c3z:A (1.4) BS02 MG ? GO:0001836 ... P31947 37224961
    782996 8c40:A (1.4) BS01 peptide ? GO:0001836 ... P31947 37224961
    782997 8c41:A (2.393) BS01 dna 5.6.2.2 GO:0003677 ... P72525 40595483
    782998 8c41:A (2.393) BS02 dna 5.6.2.2 GO:0003677 ... P72525 40595483
    782999 8c41:A (2.393) BS03 MG 5.6.2.2 GO:0003677 ... P72525 40595483
    783000 8c41:A (2.393) BS04 TE9 5.6.2.2 GO:0003677 ... P72525 40595483

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).