SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    782801 8ckb:O008 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782802 8ckb:O009 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782803 8ckb:O010 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782804 8ckb:O011 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782805 8ckb:O012 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782806 8ckb:O013 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782807 8ckb:O014 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782808 8ckb:O015 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782809 8ckb:O017 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782810 8ckb:O018 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782811 8ckb:O019 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782812 8ckb:O020 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782813 8ckb:O021 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782814 8ckb:O022 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782815 8ckb:O023 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782816 8ckb:O024 (4.39) BS01 peptide ? GO:0019058 ... A0A385DVT1 N/A
    782817 8ckb:P001 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782818 8ckb:P001 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782819 8ckb:P001 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782820 8ckb:P001 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782821 8ckb:P002 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782822 8ckb:P002 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782823 8ckb:P002 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782824 8ckb:P002 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782825 8ckb:P003 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782826 8ckb:P003 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782827 8ckb:P003 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782828 8ckb:P003 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782829 8ckb:P004 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782830 8ckb:P004 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782831 8ckb:P004 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782832 8ckb:P004 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782833 8ckb:P005 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782834 8ckb:P005 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782835 8ckb:P005 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782836 8ckb:P005 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782837 8ckb:P006 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782838 8ckb:P006 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782839 8ckb:P006 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782840 8ckb:P006 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782841 8ckb:P007 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782842 8ckb:P007 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782843 8ckb:P007 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782844 8ckb:P007 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782845 8ckb:P008 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782846 8ckb:P008 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782847 8ckb:P008 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782848 8ckb:P008 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782849 8ckb:P009 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782850 8ckb:P009 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782851 8ckb:P009 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782852 8ckb:P009 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782853 8ckb:P010 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782854 8ckb:P010 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782855 8ckb:P010 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782856 8ckb:P010 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782857 8ckb:P011 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782858 8ckb:P011 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782859 8ckb:P011 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782860 8ckb:P011 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782861 8ckb:P012 (4.39) BS01 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782862 8ckb:P012 (4.39) BS02 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782863 8ckb:P012 (4.39) BS03 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782864 8ckb:P012 (4.39) BS04 peptide ? GO:0098015 ... A0A385DTH1 N/A
    782865 8ckb:THA016 (4.39) BS01 peptide N/A N/A N/A N/A
    782866 8ckc:A (2.1) BS01 peptide ? GO:0003677 ... Q9PTN2 37054528
    782867 8ckc:A (2.1) BS02 UYU ? GO:0003677 ... Q9PTN2 37054528
    782868 8ckd:A (1.6) BS01 Y4H ? GO:0015833 ... Q52012 38058289
    782869 8ckd:A (1.6) BS02 Y45 ? GO:0015833 ... Q52012 38058289
    782870 8cke:A (1.298) BS01 GLC ? GO:0015833 ... Q52012 38058289
    782871 8cke:A (1.298) BS02 FRU ? GO:0015833 ... Q52012 38058289
    782872 8cke:A (1.298) BS03 GLC ? GO:0015833 ... Q52012 38058289
    782873 8cke:A (1.298) BS04 FRU ? GO:0015833 ... Q52012 38058289
    782874 8cke:A (1.298) BS05 VDF ? GO:0015833 ... Q52012 38058289
    782875 8cke:A (1.298) BS06 LAO ? GO:0015833 ... Q52012 38058289
    782876 8ckf:A (1.88) BS01 E5Q ? N/A O60885 37874862
    782877 8ckf:A (1.88) BS02 V0R ? N/A O60885 37874862
    782878 8ckg:A (1.714) BS01 SO4 ? N/A Q13591 38548715
    782879 8ckg:A (1.714) BS02 MAN ? N/A Q13591 38548715
    782880 8ckg:A (1.714) BS03 MAN ? N/A Q13591 38548715
    782881 8ckg:B (1.714) BS01 SO4 ? N/A Q13591 38548715
    782882 8ckg:B (1.714) BS02 MAN ? N/A Q13591 38548715
    782883 8ckg:B (1.714) BS03 MAN ? N/A Q13591 38548715
    782884 8ckh:A (1.8) BS01 ANP 2.7.1.148 GO:0005524 ... A6TAP2 N/A
    782885 8ckh:B (1.8) BS01 ANP 2.7.1.148 GO:0005524 ... A6TAP2 N/A
    782886 8ckk:A (1.56) BS01 MAN ? N/A Q13591 38548715
    782887 8ckk:A (1.56) BS02 MAN ? N/A Q13591 38548715
    782888 8ckk:B (1.56) BS01 MAN ? N/A Q13591 38548715
    782889 8ckk:B (1.56) BS02 MAN ? N/A Q13591 38548715
    782890 8ckl:A (2.56) BS01 YYJ ? N/A Q13591 38548715
    782891 8ckl:A (2.56) BS02 GU4 ? N/A Q13591 38548715
    782892 8ckl:A (2.56) BS03 MAN ? N/A Q13591 38548715
    782893 8ckl:B (2.56) BS01 GU4 ? N/A Q13591 38548715
    782894 8ckl:B (2.56) BS02 MAN ? N/A Q13591 38548715
    782895 8ckl:B (2.56) BS03 MAN ? N/A Q13591 38548715
    782896 8ckn:A (1.54) BS01 HEM 1.14.-.- GO:0004497 ... P9WPL3 N/A
    782897 8cko:A (1.421) BS01 GLC ? GO:0015833 ... Q52012 38058289
    782898 8cko:A (1.421) BS02 GLC ? GO:0015833 ... Q52012 38058289
    782899 8cko:A (1.421) BS03 BNX ? GO:0015833 ... Q52012 38058289
    782900 8cko:A (1.421) BS04 ALX ? GO:0015833 ... Q52012 38058289
    782901 8ckq:A (2.0) BS01 FAD 1.5.99.12 GO:0003824 ... E3T1W8 38776394
    782902 8ckq:A (2.0) BS02 UZX 1.5.99.12 GO:0003824 ... E3T1W8 38776394
    782903 8ckr:A (1.3) BS01 CA N/A GO:0006396 ... N/A 38591647
    782904 8ckr:A (1.3) BS02 CA N/A GO:0006396 ... N/A 38591647
    782905 8cks:A (2.6) BS01 UZC ? GO:0003677 ... P02768 N/A
    782906 8cks:A (2.6) BS02 OCA ? GO:0003677 ... P02768 N/A
    782907 8cks:A (2.6) BS03 OCA ? GO:0003677 ... P02768 N/A
    782908 8cks:A (2.6) BS04 OCA ? GO:0003677 ... P02768 N/A
    782909 8ckt:A (2.0) BS01 FAD 1.5.99.12 GO:0003824 ... E3T1W8 38776394
    782910 8ckt:A (2.0) BS02 V2F 1.5.99.12 GO:0003824 ... E3T1W8 38776394
    782911 8cku:0 (3.11) BS01 rna ? GO:0000462 ... P0CX31 38030725
    782912 8cku:1 (3.11) BS01 rna ? GO:0002181 ... Q3E792 38030725
    782913 8cku:2 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    782914 8cku:2 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    782915 8cku:3 (3.11) BS01 rna ? GO:0000028 ... P35997 38030725
    782916 8cku:4 (3.11) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    782917 8cku:5 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    782918 8cku:5 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    782919 8cku:6 (3.11) BS01 rna ? GO:0002181 ... P0CX33 38030725
    782920 8cku:7 (3.11) BS01 rna ? GO:0001965 ... P38011 38030725
    782921 8cku:8 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    782922 8cku:A (3.11) BS01 rna ? GO:0000470 ... P26784 38030725
    782923 8cku:Aa (3.11) BS01 rna ? GO:0003924 ... N/A 38030725
    782924 8cku:Aa (3.11) BS02 rna ? GO:0003924 ... N/A 38030725
    782925 8cku:Aa (3.11) BS03 GTP ? GO:0003924 ... N/A 38030725
    782926 8cku:Aa (3.11) BS04 MG ? GO:0003924 ... N/A 38030725
    782927 8cku:B (3.11) BS01 rna ? GO:0000448 ... P05740 38030725
    782928 8cku:B (3.11) BS02 rna ? GO:0000448 ... P05740 38030725
    782929 8cku:C (3.11) BS01 rna ? GO:0002181 ... P0CX49 38030725
    782930 8cku:D (3.11) BS01 rna ? GO:0002181 ... P0CX82 38030725
    782931 8cku:D (3.11) BS02 rna ? GO:0002181 ... P0CX82 38030725
    782932 8cku:DD (3.11) BS01 rna ? GO:0000027 ... P05317 38030725
    782933 8cku:E (3.11) BS01 rna ? GO:0002181 ... P0CX23 38030725
    782934 8cku:E (3.11) BS02 rna ? GO:0002181 ... P0CX23 38030725
    782935 8cku:EE (3.11) BS01 rna ? GO:0002181 ... P0CX45 38030725
    782936 8cku:EE (3.11) BS02 rna ? GO:0002181 ... P0CX45 38030725
    782937 8cku:EE (3.11) BS03 MG ? GO:0002181 ... P0CX45 38030725
    782938 8cku:Ee (3.11) BS01 rna ? GO:0000027 ... P0CX53 38030725
    782939 8cku:F (3.11) BS01 rna ? GO:0002181 ... Q02753 38030725
    782940 8cku:F (3.11) BS02 rna ? GO:0002181 ... Q02753 38030725
    782941 8cku:FF (3.11) BS01 rna ? GO:0000027 ... P14126 38030725
    782942 8cku:G (3.11) BS01 rna ? GO:0002181 ... P05749 38030725
    782943 8cku:GG (3.11) BS01 rna ? GO:0002181 ... P10664 38030725
    782944 8cku:GG (3.11) BS02 rna ? GO:0002181 ... P10664 38030725
    782945 8cku:H (3.11) BS01 rna ? GO:0002181 ... P0CX41 38030725
    782946 8cku:H (3.11) BS02 rna ? GO:0002181 ... P0CX41 38030725
    782947 8cku:HH (3.11) BS01 rna ? GO:0000027 ... P26321 38030725
    782948 8cku:HH (3.11) BS02 rna ? GO:0000027 ... P26321 38030725
    782949 8cku:I (3.11) BS01 rna ? GO:0002181 ... P04449 38030725
    782950 8cku:II (3.11) BS01 rna ? GO:0000027 ... Q02326 38030725
    782951 8cku:J (3.11) BS01 rna ? GO:0000027 ... P04456 38030725
    782952 8cku:J (3.11) BS02 rna ? GO:0000027 ... P04456 38030725
    782953 8cku:JJ (3.11) BS01 rna ? GO:0000463 ... P05737 38030725
    782954 8cku:JJ (3.11) BS02 rna ? GO:0000463 ... P05737 38030725
    782955 8cku:K (3.11) BS01 rna ? GO:0002181 ... P05743 38030725
    782956 8cku:K (3.11) BS02 rna ? GO:0002181 ... P05743 38030725
    782957 8cku:KK (3.11) BS01 rna ? GO:0000470 ... P17076 38030725
    782958 8cku:KK (3.11) BS02 rna ? GO:0000470 ... P17076 38030725
    782959 8cku:L (3.11) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    782960 8cku:LL (3.11) BS01 rna ? GO:0002181 ... P05738 38030725
    782961 8cku:M (3.11) BS01 rna ? GO:0002181 ... P02406 38030725
    782962 8cku:MM (3.11) BS01 rna ? GO:0000027 ... P41805 38030725
    782963 8cku:MM (3.11) BS02 rna ? GO:0000027 ... P41805 38030725
    782964 8cku:MM (3.11) BS03 rna ? GO:0000027 ... P41805 38030725
    782965 8cku:N (3.11) BS01 rna ? GO:0002181 ... P05747 38030725
    782966 8cku:NN (3.11) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    782967 8cku:NN (3.11) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    782968 8cku:O (3.11) BS01 rna ? GO:0002181 ... P14120 38030725
    782969 8cku:OO (3.11) BS01 rna ? GO:0002181 ... Q12690 38030725
    782970 8cku:P (3.11) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    782971 8cku:PP (3.11) BS01 rna ? GO:0000027 ... P36105 38030725
    782972 8cku:Q (3.11) BS01 rna ? GO:0002181 ... P38061 38030725
    782973 8cku:QQ (3.11) BS01 rna ? GO:0002181 ... P05748 38030725
    782974 8cku:QQ (3.11) BS02 rna ? GO:0002181 ... P05748 38030725
    782975 8cku:R (3.11) BS01 rna ? GO:0000027 ... P05744 38030725
    782976 8cku:S (3.11) BS01 rna ? GO:0002181 ... P87262 38030725
    782977 8cku:S (3.11) BS02 ZN ? GO:0002181 ... P87262 38030725
    782978 8cku:T (3.11) BS01 rna ? GO:0000463 ... P0CX84 38030725
    782979 8cku:T (3.11) BS02 rna ? GO:0000463 ... P0CX84 38030725
    782980 8cku:U (3.11) BS01 rna ? GO:0002181 ... P05745 38030725
    782981 8cku:V (3.11) BS01 rna ? GO:0000448 ... P49166 38030725
    782982 8cku:V (3.11) BS02 rna ? GO:0000448 ... P49166 38030725
    782983 8cku:V (3.11) BS03 ZN ? GO:0000448 ... P49166 38030725
    782984 8cku:W (3.11) BS01 rna ? GO:0002181 ... P49167 38030725
    782985 8cku:X (3.11) BS01 rna ? GO:0002181 ... P04650 38030725
    782986 8cku:X (3.11) BS02 rna ? GO:0002181 ... P04650 38030725
    782987 8cku:Y (3.11) BS01 rna ? GO:0000027 ... P0CH08 38030725
    782988 8cku:Y (3.11) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    782989 8cku:a (3.11) BS01 rna ? GO:0002181 ... P0CX27 38030725
    782990 8cku:a (3.11) BS02 rna ? GO:0002181 ... P0CX27 38030725
    782991 8cku:a (3.11) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    782992 8cku:b (3.11) BS01 rna ? GO:0002181 ... P0CX25 38030725
    782993 8cku:b (3.11) BS02 rna ? GO:0002181 ... P0CX25 38030725
    782994 8cku:b (3.11) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    782995 8cku:d (3.11) BS01 rna ? GO:0000028 ... P32905 38030725
    782996 8cku:e (3.11) BS01 rna ? GO:0000462 ... P33442 38030725
    782997 8cku:e (3.11) BS02 rna ? GO:0000462 ... P33442 38030725
    782998 8cku:f (3.11) BS01 rna ? GO:0000054 ... P25443 38030725
    782999 8cku:g (3.11) BS01 rna ? GO:0003723 ... N/A 38030725
    783000 8cku:h (3.11) BS01 rna ? GO:0002181 ... P0CX35 38030725

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).