SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    783201 8cm5:R (2.15) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783202 8cm5:R (2.15) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783203 8cm5:R (2.15) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783204 8cm5:S (2.15) BS01 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783205 8cm5:S (2.15) BS02 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783206 8cm5:S (2.15) BS03 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783207 8cm6:A (1.416) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783208 8cm6:A (1.416) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783209 8cm6:A (1.416) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783210 8cm6:B (1.416) BS01 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783211 8cm6:B (1.416) BS02 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783212 8cm6:B (1.416) BS03 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783213 8cm6:C (1.416) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783214 8cm6:C (1.416) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783215 8cm6:C (1.416) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783216 8cm6:C (1.416) BS04 ARF 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783217 8cm6:C (1.416) BS05 ARF 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783218 8cm6:D (1.416) BS01 ARF ? GO:0030313 ... Q72EJ0 37985883
    783219 8cm6:D (1.416) BS02 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783220 8cm6:D (1.416) BS03 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783221 8cm6:D (1.416) BS04 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783222 8cm7:A (2.117) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783223 8cm7:A (2.117) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783224 8cm7:A (2.117) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    783225 8cm7:B (2.117) BS01 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783226 8cm7:B (2.117) BS02 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783227 8cm7:B (2.117) BS03 SF4 ? GO:0030313 ... Q72EJ0 37985883
    783228 8cm8:A (1.22) BS01 V19 ? GO:0005178 ... O00214 N/A
    783229 8cm8:B (1.22) BS01 V19 ? GO:0005178 ... O00214 N/A
    783230 8cm9:A (2.8) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 37819980
    783231 8cm9:A (2.8) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 37819980
    783232 8cm9:B (2.8) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 37819980
    783233 8cm9:B (2.8) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 37819980
    783234 8cm9:C (2.8) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 37819980
    783235 8cm9:C (2.8) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 37819980
    783236 8cm9:D (2.8) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 37819980
    783237 8cm9:D (2.8) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 37819980
    783238 8cmb:A (1.84) BS01 peptide ? GO:0006955 ... P01903 37471227
    783239 8cmb:B (1.84) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783240 8cmc:A (1.42) BS01 peptide ? GO:0006955 ... P01903 37471227
    783241 8cmc:B (1.42) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783242 8cmd:A (2.54) BS01 peptide ? GO:0006955 ... P01903 37471227
    783243 8cmd:B (2.54) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783244 8cmd:D (2.54) BS01 peptide ? GO:0006955 ... P01903 37471227
    783245 8cmd:E (2.54) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783246 8cmd:G (2.54) BS01 peptide ? GO:0006955 ... P01903 37471227
    783247 8cmd:H (2.54) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783248 8cme:A (2.26) BS01 peptide ? GO:0006955 ... P01903 37471227
    783249 8cme:B (2.26) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783250 8cme:D (2.26) BS01 peptide ? GO:0006955 ... P01903 37471227
    783251 8cme:E (2.26) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783252 8cme:G (2.26) BS01 peptide ? GO:0006955 ... P01903 37471227
    783253 8cme:H (2.26) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783254 8cmf:A (2.2) BS01 peptide ? GO:0006955 ... P01903 37471227
    783255 8cmf:B (2.2) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783256 8cmf:D (2.2) BS01 peptide ? GO:0006955 ... P01903 37471227
    783257 8cmf:E (2.2) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783258 8cmg:A (1.64) BS01 peptide ? GO:0006955 ... P01903 37471227
    783259 8cmg:B (1.64) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783260 8cmh:A (1.64) BS01 peptide ? GO:0006955 ... P01903 37471227
    783261 8cmh:B (1.64) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783262 8cmi:A (2.6) BS01 peptide ? GO:0006955 ... P01903 37471227
    783263 8cmi:B (2.6) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783264 8cmi:D (2.6) BS01 peptide ? GO:0006955 ... P01903 37471227
    783265 8cmi:E (2.6) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783266 8cmi:G (2.6) BS01 peptide ? GO:0006955 ... P01903 37471227
    783267 8cmi:H (2.6) BS01 peptide ? GO:0006955 ... D7RIG0 37471227
    783268 8cmj:0 (3.79) BS01 rna ? GO:0000462 ... P0CX31 38030725
    783269 8cmj:1 (3.79) BS01 rna ? GO:0002181 ... Q3E792 38030725
    783270 8cmj:2 (3.79) BS01 rna ? GO:0003735 ... N/A 38030725
    783271 8cmj:2 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    783272 8cmj:3 (3.79) BS01 rna ? GO:0000028 ... P35997 38030725
    783273 8cmj:4 (3.79) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    783274 8cmj:5 (3.79) BS01 rna ? GO:0003735 ... N/A 38030725
    783275 8cmj:5 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    783276 8cmj:6 (3.79) BS01 rna ? GO:0002181 ... P0CX33 38030725
    783277 8cmj:7 (3.79) BS01 rna ? GO:0001965 ... P38011 38030725
    783278 8cmj:8 (3.79) BS01 rna ? GO:0003735 ... N/A 38030725
    783279 8cmj:8 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    783280 8cmj:A (3.79) BS01 rna ? GO:0000470 ... P26784 38030725
    783281 8cmj:Aa (3.79) BS01 rna ? GO:0003924 ... N/A 38030725
    783282 8cmj:Aa (3.79) BS02 GTP ? GO:0003924 ... N/A 38030725
    783283 8cmj:B (3.79) BS01 rna ? GO:0000448 ... P05740 38030725
    783284 8cmj:B (3.79) BS02 rna ? GO:0000448 ... P05740 38030725
    783285 8cmj:C (3.79) BS01 rna ? GO:0002181 ... P0CX49 38030725
    783286 8cmj:D (3.79) BS01 rna ? GO:0002181 ... P0CX82 38030725
    783287 8cmj:D (3.79) BS02 rna ? GO:0002181 ... P0CX82 38030725
    783288 8cmj:DD (3.79) BS01 rna ? GO:0000027 ... P05317 38030725
    783289 8cmj:E (3.79) BS01 rna ? GO:0002181 ... P0CX23 38030725
    783290 8cmj:E (3.79) BS02 rna ? GO:0002181 ... P0CX23 38030725
    783291 8cmj:EE (3.79) BS01 rna ? GO:0002181 ... P0CX45 38030725
    783292 8cmj:EE (3.79) BS02 rna ? GO:0002181 ... P0CX45 38030725
    783293 8cmj:Ee (3.79) BS01 rna ? GO:0000027 ... P0CX53 38030725
    783294 8cmj:F (3.79) BS01 rna ? GO:0002181 ... Q02753 38030725
    783295 8cmj:F (3.79) BS02 rna ? GO:0002181 ... Q02753 38030725
    783296 8cmj:FF (3.79) BS01 rna ? GO:0000027 ... P14126 38030725
    783297 8cmj:G (3.79) BS01 rna ? GO:0002181 ... P05749 38030725
    783298 8cmj:GG (3.79) BS01 rna ? GO:0002181 ... P10664 38030725
    783299 8cmj:GG (3.79) BS02 rna ? GO:0002181 ... P10664 38030725
    783300 8cmj:H (3.79) BS01 rna ? GO:0002181 ... P0CX41 38030725
    783301 8cmj:HH (3.79) BS01 rna ? GO:0000027 ... P26321 38030725
    783302 8cmj:HH (3.79) BS02 rna ? GO:0000027 ... P26321 38030725
    783303 8cmj:I (3.79) BS01 rna ? GO:0002181 ... P04449 38030725
    783304 8cmj:II (3.79) BS01 rna ? GO:0000027 ... Q02326 38030725
    783305 8cmj:J (3.79) BS01 rna ? GO:0000027 ... P04456 38030725
    783306 8cmj:J (3.79) BS02 rna ? GO:0000027 ... P04456 38030725
    783307 8cmj:JJ (3.79) BS01 rna ? GO:0000463 ... P05737 38030725
    783308 8cmj:JJ (3.79) BS02 rna ? GO:0000463 ... P05737 38030725
    783309 8cmj:K (3.79) BS01 rna ? GO:0002181 ... P05743 38030725
    783310 8cmj:K (3.79) BS02 rna ? GO:0002181 ... P05743 38030725
    783311 8cmj:KK (3.79) BS01 rna ? GO:0000470 ... P17076 38030725
    783312 8cmj:KK (3.79) BS02 rna ? GO:0000470 ... P17076 38030725
    783313 8cmj:L (3.79) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    783314 8cmj:LL (3.79) BS01 rna ? GO:0003735 ... N/A 38030725
    783315 8cmj:M (3.79) BS01 rna ? GO:0002181 ... P02406 38030725
    783316 8cmj:MM (3.79) BS01 rna ? GO:0000027 ... P41805 38030725
    783317 8cmj:MM (3.79) BS02 rna ? GO:0000027 ... P41805 38030725
    783318 8cmj:N (3.79) BS01 rna ? GO:0002181 ... P05747 38030725
    783319 8cmj:NN (3.79) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    783320 8cmj:NN (3.79) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    783321 8cmj:O (3.79) BS01 rna ? GO:0002181 ... P14120 38030725
    783322 8cmj:OO (3.79) BS01 rna ? GO:0002181 ... Q12690 38030725
    783323 8cmj:P (3.79) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    783324 8cmj:PP (3.79) BS01 rna ? GO:0000027 ... P36105 38030725
    783325 8cmj:Q (3.79) BS01 rna ? GO:0002181 ... P38061 38030725
    783326 8cmj:QQ (3.79) BS01 rna ? GO:0002181 ... P05748 38030725
    783327 8cmj:QQ (3.79) BS02 rna ? GO:0002181 ... P05748 38030725
    783328 8cmj:R (3.79) BS01 rna ? GO:0000027 ... P05744 38030725
    783329 8cmj:S (3.79) BS01 rna ? GO:0002181 ... P87262 38030725
    783330 8cmj:S (3.79) BS02 ZN ? GO:0002181 ... P87262 38030725
    783331 8cmj:T (3.79) BS01 rna ? GO:0000463 ... P0CX84 38030725
    783332 8cmj:T (3.79) BS02 rna ? GO:0000463 ... P0CX84 38030725
    783333 8cmj:U (3.79) BS01 rna ? GO:0002181 ... P05745 38030725
    783334 8cmj:V (3.79) BS01 rna ? GO:0000448 ... P49166 38030725
    783335 8cmj:V (3.79) BS02 rna ? GO:0000448 ... P49166 38030725
    783336 8cmj:V (3.79) BS03 ZN ? GO:0000448 ... P49166 38030725
    783337 8cmj:W (3.79) BS01 rna ? GO:0002181 ... P49167 38030725
    783338 8cmj:X (3.79) BS01 rna ? GO:0002181 ... P04650 38030725
    783339 8cmj:X (3.79) BS02 rna ? GO:0002181 ... P04650 38030725
    783340 8cmj:Y (3.79) BS01 rna ? GO:0000027 ... P0CH08 38030725
    783341 8cmj:Y (3.79) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    783342 8cmj:a (3.79) BS01 rna ? GO:0002181 ... P0CX27 38030725
    783343 8cmj:a (3.79) BS02 ZN ? GO:0002181 ... P0CX27 38030725
    783344 8cmj:b (3.79) BS01 rna ? GO:0002181 ... P0CX25 38030725
    783345 8cmj:b (3.79) BS02 rna ? GO:0002181 ... P0CX25 38030725
    783346 8cmj:b (3.79) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    783347 8cmj:d (3.79) BS01 rna ? GO:0000028 ... P32905 38030725
    783348 8cmj:e (3.79) BS01 rna ? GO:0000462 ... P33442 38030725
    783349 8cmj:f (3.79) BS01 rna ? GO:0000054 ... P25443 38030725
    783350 8cmj:g (3.79) BS01 rna ? GO:0003723 ... N/A 38030725
    783351 8cmj:h (3.79) BS01 rna ? GO:0002181 ... P0CX35 38030725
    783352 8cmj:i (3.79) BS01 rna ? GO:0000028 ... P26783 38030725
    783353 8cmj:j (3.79) BS01 rna ? GO:0000462 ... P0CX37 38030725
    783354 8cmj:k (3.79) BS01 rna ? GO:0002181 ... P26786 38030725
    783355 8cmj:l (3.79) BS01 rna ? GO:0000462 ... P0CX40 38030725
    783356 8cmj:l (3.79) BS02 rna ? GO:0000462 ... P0CX40 38030725
    783357 8cmj:m (3.79) BS01 rna ? GO:0000462 ... O13516 38030725
    783358 8cmj:n (3.79) BS01 rna ? GO:0000054 ... Q08745 38030725
    783359 8cmj:o (3.79) BS01 rna ? GO:0000028 ... P0CX47 38030725
    783360 8cmj:p (3.79) BS01 rna ? GO:0000462 ... P05756 38030725
    783361 8cmj:p (3.79) BS02 rna ? GO:0000462 ... P05756 38030725
    783362 8cmj:q (3.79) BS01 rna ? GO:0000028 ... P06367 38030725
    783363 8cmj:r (3.79) BS01 rna ? GO:0000028 ... Q01855 38030725
    783364 8cmj:r (3.79) BS02 rna ? GO:0000028 ... Q01855 38030725
    783365 8cmj:s (3.79) BS01 rna ? GO:0000462 ... P0CX51 38030725
    783366 8cmj:t (3.79) BS01 rna ? GO:0000028 ... P02407 38030725
    783367 8cmj:u (3.79) BS01 rna ? GO:0000054 ... P0CX55 38030725
    783368 8cmj:v (3.79) BS01 rna ? GO:0000028 ... P07280 38030725
    783369 8cmj:w (3.79) BS01 rna ? GO:0003723 ... N/A 38030725
    783370 8cmj:x (3.79) BS01 rna ? GO:0000447 ... P0C0V8 38030725
    783371 8cmj:y (3.79) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    783372 8cmj:z (3.79) BS01 rna ? GO:0000462 ... P0CX29 38030725
    783373 8cmk:A (2.945) BS01 peptide ? GO:0005515 ... Q9Y5L0 N/A
    783374 8cmk:B (2.945) BS01 peptide ? GO:0005515 ... Q9Y5L0 N/A
    783375 8cmk:B (2.945) BS02 peptide ? GO:0005515 ... Q9Y5L0 N/A
    783376 8cmk:B (2.945) BS03 peptide ? GO:0005515 ... Q9Y5L0 N/A
    783377 8cmn:AA (2.65) BS01 peptide ? GO:0003677 ... P13123 39714421
    783378 8cmo:1 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    783379 8cmo:1 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    783380 8cmo:1 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    783381 8cmo:1 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    783382 8cmo:1 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    783383 8cmo:1 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    783384 8cmo:1 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    783385 8cmo:1 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    783386 8cmo:1 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    783387 8cmo:1 (2.81) BS10 CHL N/A GO:0009765 ... N/A N/A
    783388 8cmo:1 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    783389 8cmo:1 (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    783390 8cmo:1 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    783391 8cmo:1 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    783392 8cmo:1 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    783393 8cmo:2 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    783394 8cmo:2 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    783395 8cmo:2 (2.81) BS03 CHL N/A GO:0009765 ... N/A N/A
    783396 8cmo:2 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    783397 8cmo:3 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    783398 8cmo:3 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    783399 8cmo:3 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    783400 8cmo:3 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).