SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    783601 8c8y:D (3.03) BS01 rna ? GO:0000027 ... P60438 36797249
    783602 8c8y:E (3.03) BS01 rna ? GO:0001070 ... P60723 36797249
    783603 8c8y:F (3.03) BS01 rna ? GO:0000027 ... P62399 36797249
    783604 8c8y:F (3.03) BS02 rna ? GO:0000027 ... P62399 36797249
    783605 8c8y:H (3.03) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    783606 8c8y:J (3.03) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783607 8c8y:K (3.03) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783608 8c8y:L (3.03) BS01 rna ? GO:0002181 ... P02413 36797249
    783609 8c8y:N (3.03) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783610 8c8y:O (3.03) BS01 rna ? GO:0002181 ... P0C018 36797249
    783611 8c8y:O (3.03) BS02 rna ? GO:0002181 ... P0C018 36797249
    783612 8c8y:P (3.03) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783613 8c8y:Q (3.03) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783614 8c8y:R (3.03) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783615 8c8y:S (3.03) BS01 rna ? GO:0002181 ... P61175 36797249
    783616 8c8y:T (3.03) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783617 8c8y:U (3.03) BS01 rna ? GO:0000027 ... P60624 36797249
    783618 8c8y:V (3.03) BS01 rna ? GO:0000027 ... P68919 36797249
    783619 8c8y:W (3.03) BS01 rna ? GO:0003735 ... P0A7L8 36797249
    783620 8c8y:W (3.03) BS02 rna ? GO:0003735 ... P0A7L8 36797249
    783621 8c8y:X (3.03) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    783622 8c8y:Y (3.03) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783623 8c8y:Z (3.03) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783624 8c8y:Z (3.03) BS02 rna ? GO:0000027 ... P0AG51 36797249
    783625 8c8z:0 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783626 8c8z:2 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783627 8c8z:D (3.12) BS01 rna ? GO:0000027 ... P60438 36797249
    783628 8c8z:E (3.12) BS01 rna ? GO:0001070 ... P60723 36797249
    783629 8c8z:F (3.12) BS01 rna ? GO:0000027 ... P62399 36797249
    783630 8c8z:F (3.12) BS02 rna ? GO:0000027 ... P62399 36797249
    783631 8c8z:H (3.12) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    783632 8c8z:J (3.12) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783633 8c8z:K (3.12) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783634 8c8z:L (3.12) BS01 rna ? GO:0002181 ... P02413 36797249
    783635 8c8z:N (3.12) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783636 8c8z:O (3.12) BS01 rna ? GO:0002181 ... P0C018 36797249
    783637 8c8z:O (3.12) BS02 rna ? GO:0002181 ... P0C018 36797249
    783638 8c8z:P (3.12) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783639 8c8z:Q (3.12) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783640 8c8z:R (3.12) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783641 8c8z:S (3.12) BS01 rna ? GO:0002181 ... P61175 36797249
    783642 8c8z:T (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783643 8c8z:U (3.12) BS01 rna ? GO:0000027 ... P60624 36797249
    783644 8c8z:V (3.12) BS01 rna ? GO:0000027 ... P68919 36797249
    783645 8c8z:W (3.12) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    783646 8c8z:W (3.12) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    783647 8c8z:X (3.12) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    783648 8c8z:Y (3.12) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783649 8c8z:Z (3.12) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783650 8c8z:Z (3.12) BS02 rna ? GO:0000027 ... P0AG51 36797249
    783651 8c90:0 (3.15) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783652 8c90:2 (3.15) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783653 8c90:D (3.15) BS01 rna ? GO:0000027 ... P60438 36797249
    783654 8c90:E (3.15) BS01 rna ? GO:0001070 ... P60723 36797249
    783655 8c90:F (3.15) BS01 rna ? GO:0000027 ... P62399 36797249
    783656 8c90:F (3.15) BS02 rna ? GO:0000027 ... P62399 36797249
    783657 8c90:J (3.15) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783658 8c90:K (3.15) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783659 8c90:L (3.15) BS01 rna ? GO:0002181 ... P02413 36797249
    783660 8c90:N (3.15) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783661 8c90:O (3.15) BS01 rna ? GO:0002181 ... P0C018 36797249
    783662 8c90:O (3.15) BS02 rna ? GO:0002181 ... P0C018 36797249
    783663 8c90:P (3.15) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783664 8c90:Q (3.15) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783665 8c90:R (3.15) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783666 8c90:S (3.15) BS01 rna ? GO:0002181 ... P61175 36797249
    783667 8c90:T (3.15) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783668 8c90:U (3.15) BS01 rna ? GO:0000027 ... P60624 36797249
    783669 8c90:V (3.15) BS01 rna ? GO:0000027 ... P68919 36797249
    783670 8c90:W (3.15) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    783671 8c90:W (3.15) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    783672 8c90:Y (3.15) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783673 8c90:Z (3.15) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783674 8c91:0 (4.19) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783675 8c91:2 (4.19) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783676 8c91:C (4.19) BS01 rna ? GO:0000027 ... P60422 36797249
    783677 8c91:D (4.19) BS01 rna ? GO:0000027 ... P60438 36797249
    783678 8c91:E (4.19) BS01 rna ? GO:0001070 ... P60723 36797249
    783679 8c91:J (4.19) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783680 8c91:K (4.19) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783681 8c91:L (4.19) BS01 rna ? GO:0002181 ... P02413 36797249
    783682 8c91:N (4.19) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783683 8c91:P (4.19) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783684 8c91:Q (4.19) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783685 8c91:R (4.19) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783686 8c91:S (4.19) BS01 rna ? GO:0002181 ... P61175 36797249
    783687 8c91:T (4.19) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783688 8c91:U (4.19) BS01 rna ? GO:0000027 ... P60624 36797249
    783689 8c91:Y (4.19) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783690 8c91:Z (4.19) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783691 8c92:0 (3.79) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783692 8c92:2 (3.79) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783693 8c92:D (3.79) BS01 rna ? GO:0000027 ... P60438 36797249
    783694 8c92:E (3.79) BS01 rna ? GO:0001070 ... P60723 36797249
    783695 8c92:J (3.79) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783696 8c92:K (3.79) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783697 8c92:L (3.79) BS01 rna ? GO:0002181 ... P02413 36797249
    783698 8c92:N (3.79) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783699 8c92:P (3.79) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783700 8c92:Q (3.79) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783701 8c92:R (3.79) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783702 8c92:S (3.79) BS01 rna ? GO:0002181 ... P61175 36797249
    783703 8c92:T (3.79) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783704 8c92:U (3.79) BS01 rna ? GO:0000027 ... P60624 36797249
    783705 8c92:Y (3.79) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783706 8c92:Z (3.79) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783707 8c93:0 (4.17) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783708 8c93:2 (4.17) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783709 8c93:D (4.17) BS01 rna ? GO:0000027 ... P60438 36797249
    783710 8c93:E (4.17) BS01 rna ? GO:0001070 ... P60723 36797249
    783711 8c93:J (4.17) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783712 8c93:K (4.17) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783713 8c93:L (4.17) BS01 rna ? GO:0002181 ... P02413 36797249
    783714 8c93:N (4.17) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783715 8c93:P (4.17) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783716 8c93:Q (4.17) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783717 8c93:R (4.17) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783718 8c93:S (4.17) BS01 rna ? GO:0002181 ... P61175 36797249
    783719 8c93:T (4.17) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783720 8c93:U (4.17) BS01 rna ? GO:0000027 ... P60624 36797249
    783721 8c93:Y (4.17) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783722 8c93:Z (4.17) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783723 8c94:0 (3.8) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783724 8c94:2 (3.8) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783725 8c94:D (3.8) BS01 rna ? GO:0000027 ... P60438 36797249
    783726 8c94:E (3.8) BS01 rna ? GO:0001070 ... P60723 36797249
    783727 8c94:F (3.8) BS01 rna ? GO:0000027 ... P62399 36797249
    783728 8c94:F (3.8) BS02 rna ? GO:0000027 ... P62399 36797249
    783729 8c94:J (3.8) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783730 8c94:K (3.8) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783731 8c94:L (3.8) BS01 rna ? GO:0002181 ... P02413 36797249
    783732 8c94:N (3.8) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783733 8c94:O (3.8) BS01 rna ? GO:0002181 ... P0C018 36797249
    783734 8c94:O (3.8) BS02 rna ? GO:0002181 ... P0C018 36797249
    783735 8c94:P (3.8) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783736 8c94:Q (3.8) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783737 8c94:R (3.8) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783738 8c94:S (3.8) BS01 rna ? GO:0002181 ... P61175 36797249
    783739 8c94:U (3.8) BS01 rna ? GO:0000027 ... P60624 36797249
    783740 8c94:V (3.8) BS01 rna ? GO:0000027 ... P68919 36797249
    783741 8c94:W (3.8) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    783742 8c94:W (3.8) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    783743 8c94:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783744 8c94:Z (3.8) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783745 8c94:Z (3.8) BS02 rna ? GO:0000027 ... P0AG51 36797249
    783746 8c95:2 (4.92) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783747 8c95:E (4.92) BS01 rna ? GO:0001070 ... P60723 36797249
    783748 8c95:F (4.92) BS01 rna ? GO:0000027 ... P62399 36797249
    783749 8c95:F (4.92) BS02 rna ? GO:0000027 ... P62399 36797249
    783750 8c95:J (4.92) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783751 8c95:L (4.92) BS01 rna ? GO:0002181 ... P02413 36797249
    783752 8c95:O (4.92) BS01 rna ? GO:0002181 ... P0C018 36797249
    783753 8c95:O (4.92) BS02 rna ? GO:0002181 ... P0C018 36797249
    783754 8c95:Q (4.92) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783755 8c95:R (4.92) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783756 8c95:S (4.92) BS01 rna ? GO:0002181 ... P61175 36797249
    783757 8c95:U (4.92) BS01 rna ? GO:0000027 ... P60624 36797249
    783758 8c95:V (4.92) BS01 rna ? GO:0000027 ... P68919 36797249
    783759 8c95:W (4.92) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    783760 8c95:W (4.92) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    783761 8c95:Y (4.92) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783762 8c95:Z (4.92) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783763 8c95:Z (4.92) BS02 rna ? GO:0000027 ... P0AG51 36797249
    783764 8c96:0 (4.43) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783765 8c96:2 (4.43) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783766 8c96:D (4.43) BS01 rna ? GO:0000027 ... P60438 36797249
    783767 8c96:E (4.43) BS01 rna ? GO:0001070 ... P60723 36797249
    783768 8c96:J (4.43) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783769 8c96:K (4.43) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783770 8c96:L (4.43) BS01 rna ? GO:0002181 ... P02413 36797249
    783771 8c96:N (4.43) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783772 8c96:P (4.43) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783773 8c96:Q (4.43) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783774 8c96:R (4.43) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783775 8c96:S (4.43) BS01 rna ? GO:0002181 ... P61175 36797249
    783776 8c96:U (4.43) BS01 rna ? GO:0000027 ... P60624 36797249
    783777 8c96:Y (4.43) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783778 8c96:Z (4.43) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783779 8c97:0 (4.07) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    783780 8c97:2 (4.07) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783781 8c97:D (4.07) BS01 rna ? GO:0000027 ... P60438 36797249
    783782 8c97:E (4.07) BS01 rna ? GO:0001070 ... P60723 36797249
    783783 8c97:K (4.07) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    783784 8c97:N (4.07) BS01 rna ? GO:0000027 ... P0AG44 36797249
    783785 8c97:P (4.07) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    783786 8c97:S (4.07) BS01 rna ? GO:0002181 ... P61175 36797249
    783787 8c97:T (4.07) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783788 8c97:U (4.07) BS01 rna ? GO:0000027 ... P60624 36797249
    783789 8c97:Y (4.07) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783790 8c98:2 (3.66) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783791 8c98:E (3.66) BS01 rna ? GO:0001070 ... P60723 36797249
    783792 8c98:J (3.66) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783793 8c98:L (3.66) BS01 rna ? GO:0002181 ... P02413 36797249
    783794 8c98:Q (3.66) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783795 8c98:R (3.66) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783796 8c98:S (3.66) BS01 rna ? GO:0002181 ... P61175 36797249
    783797 8c98:T (3.66) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783798 8c98:U (3.66) BS01 rna ? GO:0000027 ... P60624 36797249
    783799 8c98:Y (3.66) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783800 8c98:Z (3.66) BS01 rna ? GO:0000027 ... P0AG51 36797249

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).