SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    783801 8c99:2 (3.29) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783802 8c99:E (3.29) BS01 rna ? GO:0001070 ... P60723 36797249
    783803 8c99:J (3.29) BS01 rna ? GO:0002181 ... P0AA10 36797249
    783804 8c99:L (3.29) BS01 rna ? GO:0002181 ... P02413 36797249
    783805 8c99:Q (3.29) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    783806 8c99:R (3.29) BS01 rna ? GO:0002181 ... P0AG48 36797249
    783807 8c99:S (3.29) BS01 rna ? GO:0002181 ... P61175 36797249
    783808 8c99:U (3.29) BS01 rna ? GO:0000027 ... P60624 36797249
    783809 8c99:Y (3.29) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783810 8c99:Z (3.29) BS01 rna ? GO:0000027 ... P0AG51 36797249
    783811 8c9a:2 (4.86) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783812 8c9a:E (4.86) BS01 rna ? GO:0001070 ... P60723 36797249
    783813 8c9a:S (4.86) BS01 rna ? GO:0002181 ... P61175 36797249
    783814 8c9a:T (4.86) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    783815 8c9a:U (4.86) BS01 rna ? GO:0000027 ... P60624 36797249
    783816 8c9a:Y (4.86) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783817 8c9b:2 (5.9) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    783818 8c9b:E (5.9) BS01 rna ? GO:0001070 ... P60723 36797249
    783819 8c9b:S (5.9) BS01 rna ? GO:0002181 ... P61175 36797249
    783820 8c9b:U (5.9) BS01 rna ? GO:0000027 ... P60624 36797249
    783821 8c9b:Y (5.9) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783822 8c9c:S (6.62) BS01 rna ? GO:0002181 ... P61175 36797249
    783823 8c9c:U (6.62) BS01 rna ? GO:0000027 ... P60624 36797249
    783824 8c9c:Y (6.62) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    783825 8c9d:A (2.3) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    783826 8c9d:A (2.3) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    783827 8c9d:A (2.3) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    783828 8c9e:A (2.9) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783829 8c9e:A (2.9) BS02 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783830 8c9e:A (2.9) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783831 8c9f:A (3.1) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783832 8c9f:A (3.1) BS02 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783833 8c9f:A (3.1) BS03 ILA 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783834 8c9g:A (2.8) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783835 8c9g:A (2.8) BS02 MRC 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783836 8c9g:B (2.8) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783837 8c9g:B (2.8) BS02 MRC 6.1.1.5 GO:0000049 ... A0A0B6A6A8 37679387
    783838 8c9h:A (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783839 8c9h:B (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783840 8c9h:C (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783841 8c9h:D (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783842 8c9h:E (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783843 8c9h:F (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783844 8c9h:G (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783845 8c9h:H (3.2) BS01 T60 ? GO:0005515 ... O14520 38319972
    783846 8c9i:A (2.05) BS01 HEB 1.14.-.- GO:0004497 ... P9WPL7 N/A
    783847 8c9j:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    783848 8c9j:B (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    783849 8c9j:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    783850 8c9j:D (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37294576
    783851 8c9o:AAA (1.69) BS01 O6K 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    783852 8c9o:BBB (1.69) BS01 O6K 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    783853 8c9q:AAA (1.86) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    783854 8c9q:BBB (1.86) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    783855 8c9s:A (1.8) BS01 SAH ? GO:0008171 ... Q82B68 36942619
    783856 8c9s:A (1.8) BS02 MG ? GO:0008171 ... Q82B68 36942619
    783857 8c9s:A (1.8) BS03 BAQ ? GO:0008171 ... Q82B68 36942619
    783858 8c9s:B (1.8) BS01 MG ? GO:0008171 ... Q82B68 36942619
    783859 8c9s:B (1.8) BS02 SAH ? GO:0008171 ... Q82B68 36942619
    783860 8c9s:B (1.8) BS03 BAQ ? GO:0008171 ... Q82B68 36942619
    783861 8c9u:AAA (1.75) BS01 4WI N/A GO:0008233 ... P0DTD1 N/A
    783862 8c9v:A (1.5) BS01 MG ? GO:0008171 ... Q1JXV1 36942619
    783863 8c9w:A (2.114) BS01 U30 ? GO:0001609 ... P0ABE7
    P29274
    37264098
    783864 8c9w:A (2.114) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    783865 8c9w:A (2.114) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    783866 8c9w:A (2.114) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    37264098
    783867 8c9y:A (1.18) BS01 EVB ? N/A A0A0S4TLR1 37314405
    783868 8c9y:A (1.18) BS02 EVB ? N/A A0A0S4TLR1 37314405
    783869 8c9y:A (1.18) BS03 BDF ? N/A A0A0S4TLR1 37314405
    783870 8c9y:A (1.18) BS04 BDF ? N/A A0A0S4TLR1 37314405
    783871 8c9z:A (1.18) BS01 BDF ? N/A A0A0S4TLR1 37314405
    783872 8c9z:A (1.18) BS02 BDF ? N/A A0A0S4TLR1 37314405
    783873 8c9z:A (1.18) BS03 EVB ? N/A A0A0S4TLR1 37314405
    783874 8c9z:A (1.18) BS04 EVB ? N/A A0A0S4TLR1 37314405
    783875 8ca0:A (-1.00) BS01 VIU 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 N/A
    783876 8ca1:A (4.3) BS01 FAD 1.3.8.9 GO:0000062 ... P50544 38177503
    783877 8ca1:A (4.3) BS02 FAD 1.3.8.9 GO:0000062 ... P50544 38177503
    783878 8ca1:B (4.3) BS01 FAD 1.3.8.9 GO:0000062 ... P50544 38177503
    783879 8ca1:B (4.3) BS02 FAD 1.3.8.9 GO:0000062 ... P50544 38177503
    783880 8ca2:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 1932029
    783881 8ca3:B (3.2) BS01 SF4 7.1.1.2 GO:0002020 ... Q9DC70 38177503
    783882 8ca3:D (3.2) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    783883 8ca3:D (3.2) BS02 UQ9 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    783884 8ca3:E (3.2) BS01 FES 7.1.1.2 GO:0003954 ... Q9D6J6 38177503
    783885 8ca3:F (3.2) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783886 8ca3:F (3.2) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783887 8ca3:G (3.2) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783888 8ca3:G (3.2) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783889 8ca3:G (3.2) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783890 8ca3:H (3.2) BS01 UQ9 7.1.1.2 GO:0001666 ... P03888 38177503
    783891 8ca3:I (3.2) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    783892 8ca3:I (3.2) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    783893 8ca3:O (3.2) BS01 GTP ? GO:0005737 ... Q99LC3 38177503
    783894 8ca3:P (3.2) BS01 NDP ? GO:0003954 ... Q9DC69 38177503
    783895 8ca3:R (3.2) BS01 ZN ? GO:0001822 ... P52503 38177503
    783896 8ca3:T (3.2) BS01 EHZ ? GO:0000035 ... Q9CR21 38177503
    783897 8ca3:W (3.2) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    783898 8ca3:n (3.2) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    783899 8ca4:E (3.25) BS01 FES 7.1.1.2 GO:0003954 ... Q9D6J6 38177503
    783900 8ca4:F (3.25) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783901 8ca4:F (3.25) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783902 8ca4:G (3.25) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783903 8ca4:G (3.25) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783904 8ca4:G (3.25) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783905 8ca5:B (3.9) BS01 SF4 7.1.1.2 GO:0002020 ... Q9DC70 38177503
    783906 8ca5:B (3.9) BS02 UQ9 7.1.1.2 GO:0002020 ... Q9DC70 38177503
    783907 8ca5:D (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38177503
    783908 8ca5:E (3.9) BS01 FES 7.1.1.2 GO:0003954 ... Q9D6J6 38177503
    783909 8ca5:F (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783910 8ca5:F (3.9) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38177503
    783911 8ca5:G (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783912 8ca5:G (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783913 8ca5:G (3.9) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38177503
    783914 8ca5:H (3.9) BS01 UQ9 7.1.1.2 GO:0001666 ... P03888 38177503
    783915 8ca5:I (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    783916 8ca5:I (3.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38177503
    783917 8ca5:O (3.9) BS01 GTP ? GO:0005737 ... Q99LC3 38177503
    783918 8ca5:P (3.9) BS01 NDP ? GO:0003954 ... Q9DC69 38177503
    783919 8ca5:T (3.9) BS01 EHZ ? GO:0000035 ... Q9CR21 38177503
    783920 8ca5:U (3.9) BS01 EHZ ? GO:0000035 ... Q9CR21 38177503
    783921 8ca5:W (3.9) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    783922 8ca5:n (3.9) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    783923 8ca7:C (2.06) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    783924 8ca7:E (2.06) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    783925 8ca7:G (2.06) BS01 rna ? GO:0000028 ... P02359 37550453
    783926 8ca7:I (2.06) BS01 rna ? GO:0002181 ... P0A7X3 37550453
    783927 8ca7:J (2.06) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    783928 8ca7:M (2.06) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    783929 8ca7:M (2.06) BS02 MG ? GO:0000049 ... P0A7S9 37550453
    783930 8ca7:N (2.06) BS01 rna ? GO:0000028 ... P0AG59 37550453
    783931 8ca7:S (2.06) BS01 rna ? GO:0002181 ... P0A7U3 37550453
    783932 8ca9:A (2.29) BS01 MAN ? N/A Q24995 37729416
    783933 8ca9:A (2.29) BS02 CU ? N/A Q24995 37729416
    783934 8ca9:B (2.29) BS01 MAN ? N/A Q24995 37729416
    783935 8ca9:B (2.29) BS02 CU ? N/A Q24995 37729416
    783936 8ca9:C (2.29) BS01 MAN ? N/A Q24995 37729416
    783937 8ca9:C (2.29) BS02 CU ? N/A Q24995 37729416
    783938 8ca9:D (2.29) BS01 MAN ? N/A N/A 37729416
    783939 8ca9:E (2.29) BS01 MAN ? N/A N/A 37729416
    783940 8ca9:F (2.29) BS01 MAN ? N/A N/A 37729416
    783941 8caa:A (1.999) BS01 U3F ? N/A Q15561 36988034
    783942 8caa:A (1.999) BS02 U3O ? N/A Q15561 36988034
    783943 8caa:B (1.999) BS01 U3F ? N/A Q15561 36988034
    783944 8caa:B (1.999) BS02 U3O ? N/A Q15561 36988034
    783945 8cac:AAA (2.13) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    783946 8cac:BBB (2.13) BS01 O6K N/A GO:0008233 ... P0DTD1 N/A
    783947 8cad:A (2.85) BS01 MAN ? N/A N/A 37729416
    783948 8cad:A (2.85) BS02 CU ? N/A N/A 37729416
    783949 8cad:A (2.85) BS03 CU ? N/A N/A 37729416
    783950 8cad:B (2.85) BS01 MAN ? N/A N/A 37729416
    783951 8cad:B (2.85) BS02 CU ? N/A N/A 37729416
    783952 8cad:B (2.85) BS03 CU ? N/A N/A 37729416
    783953 8cad:C (2.85) BS01 MAN ? N/A N/A 37729416
    783954 8cad:C (2.85) BS02 CU ? N/A N/A 37729416
    783955 8cad:C (2.85) BS03 CU ? N/A N/A 37729416
    783956 8cad:D (2.85) BS01 MAN ? N/A N/A 37729416
    783957 8cad:D (2.85) BS02 CU ? N/A N/A 37729416
    783958 8cad:D (2.85) BS03 CU ? N/A N/A 37729416
    783959 8cad:E (2.85) BS01 MAN ? N/A N/A 37729416
    783960 8cad:E (2.85) BS02 CU ? N/A N/A 37729416
    783961 8cad:E (2.85) BS03 CU ? N/A N/A 37729416
    783962 8cad:F (2.85) BS01 MAN ? N/A N/A 37729416
    783963 8cad:F (2.85) BS02 CU ? N/A N/A 37729416
    783964 8cad:F (2.85) BS03 CU ? N/A N/A 37729416
    783965 8cae:A (2.65) BS01 4WI N/A GO:0008233 ... P0DTC1 N/A
    783966 8cah:A (3.0) BS01 rna ? GO:0000054 ... P05750 37169754
    783967 8cah:B (3.0) BS01 rna ? GO:0000054 ... P26783 37169754
    783968 8cah:B (3.0) BS02 MG ? GO:0000054 ... P26783 37169754
    783969 8cah:C (3.0) BS01 rna ? GO:0000054 ... Q08745 37169754
    783970 8cah:D (3.0) BS01 rna ? GO:0000028 ... P48589 37169754
    783971 8cah:E (3.0) BS01 rna ? GO:0000054 ... Q01855 37169754
    783972 8cah:F (3.0) BS01 rna ? GO:0000462 ... P0CX51 37169754
    783973 8cah:G (3.0) BS01 rna ? GO:0003674 ... P38747 37169754
    783974 8cah:H (3.0) BS01 rna ? GO:0000028 ... P02407 37169754
    783975 8cah:I (3.0) BS01 rna ? GO:0000054 ... P0CX55 37169754
    783976 8cah:J (3.0) BS01 rna ? GO:0000054 ... P07280 37169754
    783977 8cah:K (3.0) BS01 rna ? GO:0000462 ... P38701 37169754
    783978 8cah:L (3.0) BS01 rna ? GO:0002181 ... Q3E792 37169754
    783979 8cah:M (3.0) BS01 rna ? GO:0002181 ... P41057 37169754
    783980 8cah:M (3.0) BS02 ZN ? GO:0002181 ... P41057 37169754
    783981 8cah:N (3.0) BS01 rna ? GO:0003735 ... P05759 37169754
    783982 8cah:O (3.0) BS01 rna ? GO:0001965 ... P38011 37169754
    783983 8cah:P (3.0) BS01 rna ? GO:0000028 ... P32905 37169754
    783984 8cah:Q (3.0) BS01 rna ? GO:0000462 ... P33442 37169754
    783985 8cah:R (3.0) BS01 rna ? GO:0000054 ... P25443 37169754
    783986 8cah:S (3.0) BS01 rna ? GO:0002181 ... P0CX36 37169754
    783987 8cah:S (3.0) BS02 MG ? GO:0002181 ... P0CX36 37169754
    783988 8cah:T (3.0) BS01 rna ? GO:0000462 ... P0CX38 37169754
    783989 8cah:U (3.0) BS01 rna ? GO:0002181 ... P26786 37169754
    783990 8cah:V (3.0) BS01 rna ? GO:0000462 ... P0CX39 37169754
    783991 8cah:W (3.0) BS01 rna ? GO:0000462 ... O13516 37169754
    783992 8cah:X (3.0) BS01 rna ? GO:0000028 ... P0CX47 37169754
    783993 8cah:Y (3.0) BS01 rna ? GO:0000462 ... P05756 37169754
    783994 8cah:Z (3.0) BS01 rna ? GO:0000028 ... P06367 37169754
    783995 8cah:a (3.0) BS01 rna ? GO:0000447 ... P0C0V8 37169754
    783996 8cah:b (3.0) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    783997 8cah:c (3.0) BS01 rna ? GO:0000462 ... P0CX29 37169754
    783998 8cah:d (3.0) BS01 rna ? GO:0000462 ... P0CX31 37169754
    783999 8cah:e (3.0) BS01 rna ? GO:0000054 ... P39938 37169754
    784000 8cah:f (3.0) BS01 rna ? GO:0000028 ... P35997 37169754

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).