SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    784001 8cah:g (3.0) BS01 rna ? GO:0002181 ... P0CX33 37169754
    784002 8cah:h (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 37169754
    784003 8cah:i (3.0) BS01 rna ? GO:0001677 ... P38912 37169754
    784004 8cah:m (3.0) BS01 rna ? GO:0001731 ... P32911 37169754
    784005 8cah:p (3.0) BS01 rna ? GO:0001732 ... P06103 37169754
    784006 8cah:q (3.0) BS01 rna ? GO:0001732 ... P32497 37169754
    784007 8cah:x (3.0) BS01 rna ? GO:0000054 ... Q03195 37169754
    784008 8cah:x (3.0) BS02 SF4 ? GO:0000054 ... Q03195 37169754
    784009 8cah:x (3.0) BS03 SF4 ? GO:0000054 ... Q03195 37169754
    784010 8cah:x (3.0) BS04 ADP ? GO:0000054 ... Q03195 37169754
    784011 8cah:x (3.0) BS05 MG ? GO:0000054 ... Q03195 37169754
    784012 8cah:z (3.0) BS01 rna ? GO:0000184 ... Q05775 37169754
    784013 8cai:B (2.08) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    784014 8cai:C (2.08) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    784015 8cai:D (2.08) BS01 rna ? GO:0000028 ... P0A7V8 37550453
    784016 8cai:E (2.08) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    784017 8cai:F (2.08) BS01 rna ? GO:0002181 ... P02358 37550453
    784018 8cai:H (2.08) BS01 rna ? GO:0000028 ... P0A7W7 37550453
    784019 8cai:K (2.08) BS01 rna ? GO:0002181 ... P0A7R9 37550453
    784020 8cai:L (2.08) BS01 rna ? GO:0000049 ... P0A7S3 37550453
    784021 8cai:L (2.08) BS02 5I0 ? GO:0000049 ... P0A7S3 37550453
    784022 8cai:O (2.08) BS01 rna ? GO:0000028 ... P0ADZ4 37550453
    784023 8cai:P (2.08) BS01 rna ? GO:0000028 ... P0A7T3 37550453
    784024 8cai:Q (2.08) BS01 rna ? GO:0000028 ... P0AG63 37550453
    784025 8cai:R (2.08) BS01 rna ? GO:0002181 ... P0A7T7 37550453
    784026 8cai:T (2.08) BS01 rna ? GO:0000028 ... P0A7U7 37550453
    784027 8cai:U (2.08) BS01 rna ? GO:0000028 ... P68679 37550453
    784028 8caj:AAA (2.2) BS01 UAX N/A GO:0008233 ... P0DTD1 N/A
    784029 8cak:A (2.67) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784030 8cak:A (2.67) BS02 U4F ? GO:0016020 ... K9WT99 37884805
    784031 8cal:A (2.41) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784032 8cal:A (2.41) BS02 U45 ? GO:0016020 ... K9WT99 37884805
    784033 8cam:0 (1.86) BS01 rna ? GO:0000027 ... P0A7N9 37550453
    784034 8cam:1 (1.86) BS01 rna ? GO:0002181 ... P0A7P5 37550453
    784035 8cam:2 (1.86) BS01 rna ? GO:0002181 ... P0A7Q1 37550453
    784036 8cam:3 (1.86) BS01 rna ? GO:0002181 ... P0A7Q6 37550453
    784037 8cam:3 (1.86) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    784038 8cam:c (1.86) BS01 rna ? GO:0000027 ... P60422 37550453
    784039 8cam:c (1.86) BS02 MG ? GO:0000027 ... P60422 37550453
    784040 8cam:c (1.86) BS03 MG ? GO:0000027 ... P60422 37550453
    784041 8cam:d (1.86) BS01 rna ? GO:0000027 ... P60438 37550453
    784042 8cam:e (1.86) BS01 rna ? GO:0001070 ... P60723 37550453
    784043 8cam:g (1.86) BS01 rna ? GO:0000027 ... P0AG55 37550453
    784044 8cam:h (1.86) BS01 rna ? GO:0002181 ... P0A7R1 37550453
    784045 8cam:i (1.86) BS01 rna ? GO:0002181 ... P0AA10 37550453
    784046 8cam:j (1.86) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    784047 8cam:k (1.86) BS01 rna ? GO:0002181 ... P02413 37550453
    784048 8cam:l (1.86) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    784049 8cam:l (1.86) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    784050 8cam:l (1.86) BS03 6O1 ? GO:0000027 ... P0ADY7 37550453
    784051 8cam:m (1.86) BS01 rna ? GO:0000027 ... P0AG44 37550453
    784052 8cam:o (1.86) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    784053 8cam:p (1.86) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    784054 8cam:q (1.86) BS01 rna ? GO:0002181 ... P0AG48 37550453
    784055 8cam:r (1.86) BS01 rna ? GO:0002181 ... P61175 37550453
    784056 8cam:s (1.86) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    784057 8cam:t (1.86) BS01 rna ? GO:0000027 ... P60624 37550453
    784058 8cam:u (1.86) BS01 rna ? GO:0000027 ... P68919 37550453
    784059 8cam:v (1.86) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    784060 8cam:w (1.86) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    784061 8cam:x (1.86) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    784062 8cam:y (1.86) BS01 rna ? GO:0000027 ... P0AG51 37550453
    784063 8cam:y (1.86) BS02 rna ? GO:0000027 ... P0AG51 37550453
    784064 8cam:z (1.86) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    784065 8can:A (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784066 8can:A (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784067 8can:A (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784068 8can:A (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784069 8can:B (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784070 8can:B (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784071 8can:B (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784072 8can:B (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784073 8can:C (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784074 8can:C (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784075 8can:C (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784076 8can:C (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784077 8can:D (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784078 8can:D (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784079 8can:D (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784080 8can:D (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784081 8can:E (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784082 8can:E (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784083 8can:E (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784084 8can:E (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784085 8can:F (1.93) BS01 TRP ? N/A A0A6J1WF64 37729416
    784086 8can:F (1.93) BS02 CU ? N/A A0A6J1WF64 37729416
    784087 8can:F (1.93) BS03 CU ? N/A A0A6J1WF64 37729416
    784088 8can:F (1.93) BS04 CU ? N/A A0A6J1WF64 37729416
    784089 8cao:A (2.3) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784090 8cao:A (2.3) BS02 U40 ? GO:0016020 ... K9WT99 37884805
    784091 8cap:A (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784092 8cap:A (3.0) BS02 U4O ? GO:0016020 ... K9WT99 37884805
    784093 8cap:A (3.0) BS03 FAD ? GO:0016020 ... K9WT99 37884805
    784094 8cap:B (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784095 8cap:B (3.0) BS02 U4O ? GO:0016020 ... K9WT99 37884805
    784096 8cap:B (3.0) BS03 FAD ? GO:0016020 ... K9WT99 37884805
    784097 8cap:C (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784098 8cap:C (3.0) BS02 FAD ? GO:0016020 ... K9WT99 37884805
    784099 8cap:C (3.0) BS03 U4O ? GO:0016020 ... K9WT99 37884805
    784100 8cap:E (3.0) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784101 8cap:E (3.0) BS02 FAD ? GO:0016020 ... K9WT99 37884805
    784102 8cap:E (3.0) BS03 U4O ? GO:0016020 ... K9WT99 37884805
    784103 8cas:A (3.3) BS01 rna ? GO:0001677 ... P38912 37169754
    784104 8cas:B (3.3) BS01 rna ? GO:0000054 ... P05750 37169754
    784105 8cas:C (3.3) BS01 rna ? GO:0000054 ... P26783 37169754
    784106 8cas:C (3.3) BS02 MG ? GO:0000054 ... P26783 37169754
    784107 8cas:D (3.3) BS01 rna ? GO:0000054 ... Q08745 37169754
    784108 8cas:E (3.3) BS01 rna ? GO:0000054 ... Q01855 37169754
    784109 8cas:F (3.3) BS01 rna ? GO:0000028 ... P48589 37169754
    784110 8cas:G (3.3) BS01 rna 3.6.5.3 GO:0000049 ... P32481 37169754
    784111 8cas:G (3.3) BS02 MET 3.6.5.3 GO:0000049 ... P32481 37169754
    784112 8cas:G (3.3) BS03 MG 3.6.5.3 GO:0000049 ... P32481 37169754
    784113 8cas:H (3.3) BS01 rna ? GO:0000462 ... P0CX51 37169754
    784114 8cas:I (3.3) BS01 rna ? GO:0000028 ... P02407 37169754
    784115 8cas:J (3.3) BS01 rna ? GO:0000054 ... P0CX55 37169754
    784116 8cas:K (3.3) BS01 rna ? GO:0000054 ... P07280 37169754
    784117 8cas:L (3.3) BS01 rna ? GO:0000462 ... P38701 37169754
    784118 8cas:M (3.3) BS01 rna ? GO:0002181 ... Q3E792 37169754
    784119 8cas:N (3.3) BS01 rna ? GO:0002181 ... P41057 37169754
    784120 8cas:O (3.3) BS01 rna ? GO:0003735 ... P05759 37169754
    784121 8cas:O (3.3) BS02 ZN ? GO:0003735 ... P05759 37169754
    784122 8cas:P (3.3) BS01 rna ? GO:0000028 ... P32905 37169754
    784123 8cas:Q (3.3) BS01 rna ? GO:0000462 ... P33442 37169754
    784124 8cas:R (3.3) BS01 rna ? GO:0000054 ... P25443 37169754
    784125 8cas:S (3.3) BS01 rna ? GO:0002181 ... P0CX36 37169754
    784126 8cas:T (3.3) BS01 rna ? GO:0000462 ... P0CX38 37169754
    784127 8cas:U (3.3) BS01 rna ? GO:0002181 ... P26786 37169754
    784128 8cas:V (3.3) BS01 rna ? GO:0000462 ... P0CX39 37169754
    784129 8cas:W (3.3) BS01 rna ? GO:0000462 ... O13516 37169754
    784130 8cas:X (3.3) BS01 rna ? GO:0000028 ... P0CX47 37169754
    784131 8cas:Y (3.3) BS01 rna ? GO:0000462 ... P05756 37169754
    784132 8cas:Z (3.3) BS01 rna ? GO:0000028 ... P06367 37169754
    784133 8cas:b (3.3) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    784134 8cas:c (3.3) BS01 rna ? GO:0000462 ... P0CX29 37169754
    784135 8cas:d (3.3) BS01 rna ? GO:0000462 ... P0CX31 37169754
    784136 8cas:e (3.3) BS01 rna ? GO:0000054 ... P39938 37169754
    784137 8cas:f (3.3) BS01 rna ? GO:0000028 ... P35997 37169754
    784138 8cas:g (3.3) BS01 rna ? GO:0002181 ... P0CX33 37169754
    784139 8cas:h (3.3) BS01 rna ? GO:0001965 ... P38011 37169754
    784140 8cas:i (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 37169754
    784141 8cas:j (3.3) BS01 rna ? GO:0001731 ... P20459 37169754
    784142 8cas:j (3.3) BS02 rna ? GO:0001731 ... P20459 37169754
    784143 8cas:k (3.3) BS01 rna ? GO:0000054 ... Q03195 37169754
    784144 8cas:k (3.3) BS02 ADP ? GO:0000054 ... Q03195 37169754
    784145 8cas:k (3.3) BS03 ATP ? GO:0000054 ... Q03195 37169754
    784146 8cas:k (3.3) BS04 SF4 ? GO:0000054 ... Q03195 37169754
    784147 8cas:k (3.3) BS05 SF4 ? GO:0000054 ... Q03195 37169754
    784148 8cas:m (3.3) BS01 ZN ? GO:0001732 ... P38431 37169754
    784149 8cas:p (3.3) BS01 rna ? GO:0001732 ... P06103 37169754
    784150 8cas:q (3.3) BS01 rna ? GO:0001732 ... P32497 37169754
    784151 8cas:s (3.3) BS01 rna ? GO:0001731 ... P09064 37169754
    784152 8cas:s (3.3) BS02 ZN ? GO:0001731 ... P09064 37169754
    784153 8cas:x (3.3) BS01 rna ? GO:0003674 ... P38747 37169754
    784154 8cat:A (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 3856839
    784155 8cat:A (2.5) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 3856839 MOAD: Kd<10nM
    784156 8cat:B (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 3856839
    784157 8cat:B (2.5) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 3856839 MOAD: Kd<10nM
    784158 8cau:A (3.4) BS01 NCT ? GO:0001540 ... P36544 37749098
    784159 8cau:B (3.4) BS01 NCT ? GO:0001540 ... P36544 37749098
    784160 8cau:C (3.4) BS01 NCT ? GO:0001540 ... P36544 37749098
    784161 8cau:D (3.4) BS01 NCT ? GO:0001540 ... P36544 37749098
    784162 8cau:E (3.4) BS01 NCT ? GO:0001540 ... P36544 37749098
    784163 8cav:A (2.87) BS01 peptide 2.7.11.1 GO:0004672 ... D1A2F7 37014271
    784164 8cav:A (2.87) BS02 ANP 2.7.11.1 GO:0004672 ... D1A2F7 37014271
    784165 8cav:A (2.87) BS03 MG 2.7.11.1 GO:0004672 ... D1A2F7 37014271
    784166 8cav:B (2.87) BS01 peptide 2.7.11.1 GO:0004672 ... D1A2F7 37014271
    784167 8cav:B (2.87) BS02 ANP 2.7.11.1 GO:0004672 ... D1A2F7 37014271
    784168 8caw:A (1.256) BS01 C84 ? GO:0015833 ... A5WYD2 38058289
    784169 8caw:A (1.256) BS02 UKU ? GO:0015833 ... A5WYD2 38058289
    784170 8cay:A (1.626) BS01 Y4H ? GO:0015833 ... A5WYD2 38058289
    784171 8cay:A (1.626) BS02 Y45 ? GO:0015833 ... A5WYD2 38058289
    784172 8caz:B (2.11) BS01 rna ? GO:0000028 ... P0A7V0 37550453
    784173 8caz:C (2.11) BS01 rna ? GO:0000028 ... P0A7V3 37550453
    784174 8caz:G (2.11) BS01 rna ? GO:0000028 ... P02359 37550453
    784175 8caz:I (2.11) BS01 rna ? GO:0002181 ... P0A7X3 37550453
    784176 8caz:J (2.11) BS01 rna ? GO:0000049 ... P0A7R5 37550453
    784177 8caz:M (2.11) BS01 rna ? GO:0000049 ... P0A7S9 37550453
    784178 8caz:N (2.11) BS01 rna ? GO:0000028 ... P0AG59 37550453
    784179 8caz:S (2.11) BS01 peptide ? GO:0002181 ... P0A7U3 37550453
    784180 8caz:S (2.11) BS02 rna ? GO:0002181 ... P0A7U3 37550453
    784181 8cb0:A (2.5) BS01 FAD ? GO:0016020 ... K9WT99 37884805
    784182 8cb0:A (2.5) BS02 U4F ? GO:0016020 ... K9WT99 37884805
    784183 8cb0:A (2.5) BS03 NAP ? GO:0016020 ... K9WT99 37884805
    784184 8cb1:A (1.75) BS01 U4X 3.2.1.20 GO:0004553 ... P10253 37655021
    784185 8cb2:CCC (2.7) BS01 CA ? N/A Q75X32 N/A
    784186 8cb4:A (2.57) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784187 8cb4:B (2.57) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784188 8cb5:A (2.25) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784189 8cb5:B (2.25) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784190 8cb6:A (1.9) BS01 U54 3.2.1.20 GO:0004553 ... P10253 37655021
    784191 8cb7:A (2.85) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784192 8cb7:B (2.85) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784193 8cb8:A (2.25) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784194 8cb8:B (2.25) BS01 peptide N/A GO:0003677 ... P22262 39970044
    784195 8cb9:A (1.79) BS01 BNX ? GO:0015833 ... A5WYD2 38058289
    784196 8cb9:A (1.79) BS02 ALX ? GO:0015833 ... A5WYD2 38058289
    784197 8cbc:A (1.4) BS01 MAN 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    784198 8cbc:A (1.4) BS02 MAN 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    784199 8cbc:A (1.4) BS03 XLS 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    784200 8cbc:A (1.4) BS04 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).