SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    784201 8cq7:CQ (3.2) BS02 MG N/A GO:0000054 ... A0A8H6BYS1 N/A
    784202 8cq7:CR (3.2) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    784203 8cq7:CS (3.2) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    784204 8cq7:CT (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    784205 8cq7:CU (3.2) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    784206 8cq7:CV (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784207 8cq7:CV (3.2) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784208 8cq7:CW (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    784209 8cq7:CW (3.2) BS02 MG N/A GO:0003723 ... A0A8H6F1X2 N/A
    784210 8cq7:CX (3.2) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    784211 8cq7:CY (3.2) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    784212 8cq7:CY (3.2) BS02 MG N/A GO:0003735 ... A0A1D8PN83 N/A
    784213 8cq7:CZ (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    784214 8cq7:D (3.2) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    784215 8cq7:DA (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    784216 8cq7:DB (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    784217 8cq7:DB (3.2) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    784218 8cq7:DC (3.2) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784219 8cq7:DC (3.2) BS02 MG N/A GO:0000028 ... A0A1D8PK22 N/A
    784220 8cq7:DD (3.2) BS01 rna N/A GO:0000462 ... O94017 N/A
    784221 8cq7:DE (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    784222 8cq7:DF (3.2) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    784223 8cq7:DG (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    784224 8cq7:DG (3.2) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    784225 8cq7:DG (3.2) BS03 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    784226 8cq7:DH (3.2) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    784227 8cq7:DI (3.2) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    784228 8cq7:DJ (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    784229 8cq7:DJ (3.2) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    784230 8cq7:DJ (3.2) BS03 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    784231 8cq7:DK (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    784232 8cq7:DL (3.2) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    784233 8cq7:DM (3.2) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    784234 8cq7:DN (3.2) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    784235 8cq7:DN (3.2) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    784236 8cq7:DO (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    784237 8cq7:DP (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    784238 8cq7:DQ (3.2) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    784239 8cq7:DQ (3.2) BS02 MG N/A GO:0002181 ... A0A1D8PTR4 N/A
    784240 8cq7:DQ (3.2) BS03 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    784241 8cq7:DR (3.2) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    784242 8cq7:DS (3.2) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    784243 8cq7:DS (3.2) BS02 ZN N/A GO:0003735 ... Q5A109 N/A
    784244 8cq7:DT (3.2) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    784245 8cq7:E (3.2) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    784246 8cq7:F (3.2) BS01 rna N/A GO:0000054 ... A0A8H6BYS1 N/A
    784247 8cq7:G (3.2) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    784248 8cq7:G (3.2) BS02 MG N/A GO:0003723 ... A0A1D8PCI6 N/A
    784249 8cq7:H (3.2) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    784250 8cq7:H (3.2) BS02 MG N/A GO:0000054 ... A0A8H6BS29 N/A
    784251 8cq7:I (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    784252 8cq7:I (3.2) BS02 MG N/A GO:0003735 ... A0A8H6BZ37 N/A
    784253 8cq7:J (3.2) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    784254 8cq7:J (3.2) BS02 MG N/A GO:0003735 ... A0A8H6C655 N/A
    784255 8cq7:K (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784256 8cq7:K (3.2) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784257 8cq7:K (3.2) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    784258 8cq7:L (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    784259 8cq7:L1 (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    784260 8cq7:M (3.2) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    784261 8cq7:N (3.2) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    784262 8cq7:O (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    784263 8cq7:P (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    784264 8cq7:P0 (3.2) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    784265 8cq7:P0 (3.2) BS02 MG N/A GO:0000027 ... G1UA71 N/A
    784266 8cq7:Q (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    784267 8cq7:Q (3.2) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    784268 8cq7:R (3.2) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784269 8cq7:R (3.2) BS02 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784270 8cq7:R (3.2) BS03 MG N/A GO:0000028 ... A0A1D8PK22 N/A
    784271 8cq7:S (3.2) BS01 rna N/A GO:0000462 ... O94017 N/A
    784272 8cq7:T (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    784273 8cq7:U (3.2) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    784274 8cq7:V (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    784275 8cq7:W (3.2) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    784276 8cq7:X (3.2) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    784277 8cq7:Y (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    784278 8cq7:Y (3.2) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    784279 8cq7:Z (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    784280 8cq7:Z (3.2) BS02 MG N/A GO:0003735 ... A0A8H6F0V0 N/A
    784281 8cq7:a (3.2) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    784282 8cq7:b (3.2) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    784283 8cq7:c (3.2) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    784284 8cq7:c (3.2) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    784285 8cq7:c (3.2) BS03 MG N/A GO:0003729 ... A0A8H6BTS1 N/A
    784286 8cq7:d (3.2) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    784287 8cq7:e (3.2) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    784288 8cq7:f (3.2) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    784289 8cq7:f (3.2) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    784290 8cq7:g (3.2) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    784291 8cq7:h (3.2) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    784292 8cq7:i (3.2) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784293 8cq7:i (3.2) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784294 8cq7:i (3.2) BS03 MG N/A GO:0000723 ... A0A1D8PK71 N/A
    784295 8cq7:j (3.2) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    784296 8cq7:j (3.2) BS02 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    784297 8cq7:j (3.2) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    784298 8cq7:j (3.2) BS04 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    784299 8cq7:k (3.2) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    784300 8cq7:k (3.2) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    784301 8cq7:k (3.2) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    784302 8cq7:k (3.2) BS04 MG N/A GO:0000027 ... Q59LS1 N/A
    784303 8cq7:k (3.2) BS05 MG N/A GO:0000027 ... Q59LS1 N/A
    784304 8cq7:k (3.2) BS06 MG N/A GO:0000027 ... Q59LS1 N/A
    784305 8cq7:l (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    784306 8cq7:l (3.2) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    784307 8cq7:l1 (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    784308 8cq7:m (3.2) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    784309 8cq7:m (3.2) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    784310 8cq7:n (3.2) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    784311 8cq7:o (3.2) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    784312 8cq7:o (3.2) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    784313 8cq7:p (3.2) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    784314 8cq7:p (3.2) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    784315 8cq7:p0 (3.2) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    784316 8cq7:q (3.2) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    784317 8cq7:r (3.2) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    784318 8cq7:r (3.2) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    784319 8cq7:r (3.2) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    784320 8cq7:s (3.2) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    784321 8cq7:s (3.2) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    784322 8cq7:t (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    784323 8cq7:t (3.2) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    784324 8cq7:u (3.2) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    784325 8cq7:v (3.2) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    784326 8cq7:v (3.2) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    784327 8cq7:v (3.2) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    784328 8cq7:v (3.2) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    784329 8cq7:v (3.2) BS05 MG N/A GO:0002181 ... Q5A6R1 N/A
    784330 8cq7:w (3.2) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    784331 8cq7:w (3.2) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    784332 8cq7:x (3.2) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    784333 8cq7:x (3.2) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    784334 8cq7:x (3.2) BS03 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    784335 8cq7:x (3.2) BS04 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    784336 8cq7:y (3.2) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    784337 8cq7:y (3.2) BS02 MG N/A GO:0003723 ... A0A8H6C4Y1 N/A
    784338 8cq7:y (3.2) BS03 MG N/A GO:0003723 ... A0A8H6C4Y1 N/A
    784339 8cq7:y (3.2) BS04 MG N/A GO:0003723 ... A0A8H6C4Y1 N/A
    784340 8cq7:z (3.2) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    784341 8cq7:z (3.2) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    784342 8cq7:z (3.2) BS03 MG N/A GO:0003723 ... A0A1D8PK40 N/A
    784343 8cq8:A (1.8) BS01 VFF 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784344 8cq8:A (1.8) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784345 8cq8:B (1.8) BS01 VFF 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784346 8cq8:B (1.8) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784347 8cq9:A (1.75) BS01 VFU 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784348 8cq9:A (1.75) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784349 8cq9:B (1.75) BS01 VFU 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784350 8cq9:B (1.75) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784351 8cqa:A (2.0) BS01 VF6 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784352 8cqa:A (2.0) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784353 8cqa:B (2.0) BS01 VF6 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784354 8cqa:B (2.0) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    784355 8cqb:A (3.7) BS01 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784356 8cqb:A (3.7) BS02 AF3 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784357 8cqb:A (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784358 8cqb:B (3.7) BS01 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784359 8cqb:B (3.7) BS02 AF3 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784360 8cqb:B (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 39394410
    784361 8cqc:A (2.82) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784362 8cqc:B (2.82) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784363 8cqc:C (2.82) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784364 8cqc:D (2.82) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784365 8cqc:E (2.82) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784366 8cqd:A (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784367 8cqd:B (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784368 8cqd:C (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784369 8cqd:D (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784370 8cqd:E (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784371 8cqd:F (3.54) BS01 RET N/A GO:0005216 ... Q6J4G7 39138159
    784372 8cqe:C (2.85) BS01 VFO ? N/A P40337 37708384
    784373 8cqe:F (2.85) BS01 VFO ? N/A P40337 37708384
    784374 8cqe:I (2.85) BS01 VFO ? N/A P40337 37708384
    784375 8cqe:L (2.85) BS01 VFO ? N/A P40337 37708384
    784376 8cqf:A (2.05) BS01 GLC 3.2.1.1 GO:0003824 ... P29957 37379391
    784377 8cqf:A (2.05) BS02 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    784378 8cqf:A (2.05) BS03 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    784379 8cqf:A (2.05) BS04 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    784380 8cqf:A (2.05) BS05 GLC 3.2.1.1 GO:0003824 ... P29957 37379391
    784381 8cqf:A (2.05) BS06 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    784382 8cqf:A (2.05) BS07 GLC 3.2.1.1 GO:0003824 ... P29957 37379391
    784383 8cqf:A (2.05) BS08 GLC 3.2.1.1 GO:0003824 ... P29957 37379391
    784384 8cqf:A (2.05) BS09 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    784385 8cqg:A (1.74) BS01 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    784386 8cqh:A (2.0) BS01 SAH 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... K0BRZ6 38781970
    784387 8cqh:A (2.0) BS02 GTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... K0BRZ6 38781970
    784388 8cqi:A (2.1) BS01 VGO 3.2.1.166 GO:0016020 ... Q9Y251 38118176
    784389 8cqi:A (2.1) BS02 LYY 3.2.1.166 GO:0016020 ... Q9Y251 38118176
    784390 8cqi:B (2.1) BS01 VGO 3.2.1.166 N/A Q9Y251 38118176
    784391 8cqk:C (2.62) BS01 VYQ ? N/A P40337 37708384
    784392 8cqk:F (2.62) BS01 VYQ ? N/A P40337 37708384
    784393 8cqk:I (2.62) BS01 VYQ ? N/A P40337 37708384
    784394 8cqk:L (2.62) BS01 VYQ ? N/A P40337 37708384
    784395 8cql:C (2.38) BS01 VH3 ? N/A P40337 37708384
    784396 8cql:F (2.38) BS01 VH3 ? N/A P40337 37708384
    784397 8cql:I (2.38) BS01 VH3 ? N/A P40337 37708384
    784398 8cql:L (2.38) BS01 VH3 ? N/A P40337 37708384
    784399 8cqm:A (2.0) BS01 ZN 3.1.4.3 GO:0004629 ... P33378 37838694
    784400 8cqm:A (2.0) BS02 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).