SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    784801 8cre:CD (3.0) BS01 rna N/A GO:0003735 ... P47834 N/A
    784802 8cre:CE (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    784803 8cre:CE (3.0) BS02 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    784804 8cre:CE (3.0) BS03 ZN N/A GO:0003723 ... A0A1D8PF45 N/A
    784805 8cre:CF (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PG16 N/A
    784806 8cre:CG (3.0) BS01 rna N/A GO:0003735 ... Q96W55 N/A
    784807 8cre:CG (3.0) BS02 rna N/A GO:0003735 ... Q96W55 N/A
    784808 8cre:CH (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    784809 8cre:CH (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    784810 8cre:CJ (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BR69 N/A
    784811 8cre:CJ (3.0) BS02 3K5 N/A GO:0003735 ... A0A8H6BR69 N/A
    784812 8cre:CJ (3.0) BS03 ZN N/A GO:0003735 ... A0A8H6BR69 N/A
    784813 8cre:CK (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    784814 8cre:CK (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    784815 8cre:CL (3.0) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784816 8cre:CL (3.0) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784817 8cre:CN (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    784818 8cre:CO (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    784819 8cre:CP (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    784820 8cre:CQ (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BYS1 N/A
    784821 8cre:CR (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    784822 8cre:CS (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    784823 8cre:CT (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    784824 8cre:CU (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    784825 8cre:CV (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784826 8cre:CV (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784827 8cre:CW (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    784828 8cre:CX (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    784829 8cre:CY (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    784830 8cre:CZ (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    784831 8cre:D (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    784832 8cre:DA (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    784833 8cre:DB (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    784834 8cre:DB (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    784835 8cre:DC (3.0) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784836 8cre:DC (3.0) BS02 MG N/A GO:0000028 ... A0A1D8PK22 N/A
    784837 8cre:DD (3.0) BS01 rna N/A GO:0000462 ... O94017 N/A
    784838 8cre:DE (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    784839 8cre:DF (3.0) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    784840 8cre:DG (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    784841 8cre:DG (3.0) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    784842 8cre:DH (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    784843 8cre:DI (3.0) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    784844 8cre:DJ (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    784845 8cre:DK (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    784846 8cre:DL (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    784847 8cre:DM (3.0) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    784848 8cre:DN (3.0) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    784849 8cre:DN (3.0) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    784850 8cre:DO (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    784851 8cre:DP (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    784852 8cre:DQ (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    784853 8cre:DQ (3.0) BS02 MG N/A GO:0002181 ... A0A1D8PTR4 N/A
    784854 8cre:DQ (3.0) BS03 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    784855 8cre:DR (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    784856 8cre:DS (3.0) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    784857 8cre:DS (3.0) BS02 ZN N/A GO:0003735 ... Q5A109 N/A
    784858 8cre:DT (3.0) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    784859 8cre:E (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    784860 8cre:F (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BYS1 N/A
    784861 8cre:G (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    784862 8cre:G (3.0) BS02 MG N/A GO:0003723 ... A0A1D8PCI6 N/A
    784863 8cre:H (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    784864 8cre:I (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    784865 8cre:J (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    784866 8cre:J (3.0) BS02 MG N/A GO:0003735 ... A0A8H6C655 N/A
    784867 8cre:K (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784868 8cre:K (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    784869 8cre:K (3.0) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    784870 8cre:L (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    784871 8cre:L1 (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    784872 8cre:M (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    784873 8cre:N (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    784874 8cre:O (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    784875 8cre:P (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    784876 8cre:P0 (3.0) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    784877 8cre:Q (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    784878 8cre:Q (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    784879 8cre:R (3.0) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784880 8cre:R (3.0) BS02 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    784881 8cre:R (3.0) BS03 MG N/A GO:0000028 ... A0A1D8PK22 N/A
    784882 8cre:S (3.0) BS01 rna N/A GO:0000462 ... O94017 N/A
    784883 8cre:T (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    784884 8cre:U (3.0) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    784885 8cre:V (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    784886 8cre:V (3.0) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    784887 8cre:W (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    784888 8cre:X (3.0) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    784889 8cre:Y (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    784890 8cre:Y (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    784891 8cre:Z (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    784892 8cre:a (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    784893 8cre:b (3.0) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    784894 8cre:c (3.0) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    784895 8cre:c (3.0) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    784896 8cre:d (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    784897 8cre:e (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    784898 8cre:f (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    784899 8cre:f (3.0) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    784900 8cre:g (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    784901 8cre:h (3.0) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    784902 8cre:h (3.0) BS02 ZN N/A GO:0003735 ... Q5A109 N/A
    784903 8cre:i (3.0) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784904 8cre:i (3.0) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    784905 8cre:i (3.0) BS03 MG N/A GO:0000723 ... A0A1D8PK71 N/A
    784906 8cre:j (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    784907 8cre:j (3.0) BS02 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    784908 8cre:j (3.0) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    784909 8cre:k (3.0) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    784910 8cre:k (3.0) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    784911 8cre:k (3.0) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    784912 8cre:k (3.0) BS04 MG N/A GO:0000027 ... Q59LS1 N/A
    784913 8cre:l (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    784914 8cre:l (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    784915 8cre:l1 (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    784916 8cre:m (3.0) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    784917 8cre:m (3.0) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    784918 8cre:n (3.0) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    784919 8cre:o (3.0) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    784920 8cre:o (3.0) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    784921 8cre:p (3.0) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    784922 8cre:p (3.0) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    784923 8cre:p0 (3.0) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    784924 8cre:q (3.0) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    784925 8cre:r (3.0) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    784926 8cre:r (3.0) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    784927 8cre:r (3.0) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    784928 8cre:r (3.0) BS04 MG N/A GO:0003735 ... Q5AIB8 N/A
    784929 8cre:s (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    784930 8cre:s (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    784931 8cre:t (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    784932 8cre:t (3.0) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    784933 8cre:u (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    784934 8cre:v (3.0) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    784935 8cre:v (3.0) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    784936 8cre:v (3.0) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    784937 8cre:v (3.0) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    784938 8cre:w (3.0) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    784939 8cre:w (3.0) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    784940 8cre:x (3.0) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    784941 8cre:x (3.0) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    784942 8cre:x (3.0) BS03 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    784943 8cre:x (3.0) BS04 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    784944 8cre:y (3.0) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    784945 8cre:z (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    784946 8cre:z (3.0) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    784947 8cre:z (3.0) BS03 MG N/A GO:0003723 ... A0A1D8PK40 N/A
    784948 8crf:A (1.15) BS01 NT9 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 37446375
    784949 8crg:AA (1.49) BS01 ADP N/A N/A N/A 37418448
    784950 8crg:AA (1.49) BS02 ADP N/A N/A N/A 37418448
    784951 8crg:BA (1.49) BS01 ADP N/A N/A N/A 37418448
    784952 8crg:BA (1.49) BS02 ADP N/A N/A N/A 37418448
    784953 8crh:A (1.3) BS01 VIL 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784954 8crh:A (1.3) BS02 NDP 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784955 8crh:A (1.3) BS03 VIL 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784956 8crh:B (1.3) BS01 VIL 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784957 8crh:B (1.3) BS02 NDP 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784958 8crh:B (1.3) BS03 VIL 1.5.1.3 GO:0000166 ... A0A0L0P1H8 37428844
    784959 8cri:A (2.1) BS01 LPA 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    784960 8crj:A (2.6) BS01 LAQ 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    784961 8crk:B (1.1) BS01 OG3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 37446375
    784962 8crl:A (2.6) BS01 VK9 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    784963 8crl:A (2.6) BS02 CA 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    784964 8crm:A (1.42) BS01 OF6 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 37446375
    784965 8crn:A (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784966 8crn:A (2.0) BS02 VJL ? GO:0005576 ... P22629 N/A
    784967 8crn:B (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784968 8crn:C (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784969 8crn:C (2.0) BS02 VJL ? GO:0005576 ... P22629 N/A
    784970 8crn:D (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784971 8crn:D (2.0) BS02 VJL ? GO:0005576 ... P22629 N/A
    784972 8cro:A (3.1) BS01 dna 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    784973 8cro:A (3.1) BS02 rna 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    784974 8cro:A (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    784975 8cro:A (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    784976 8cro:A (3.1) BS05 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    784977 8cro:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    784978 8cro:B (3.1) BS02 rna 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    784979 8cro:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    784980 8cro:C (3.1) BS01 dna 2.7.7.6 GO:0000428 ... Q8U0M5 38709902
    784981 8cro:N (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    784982 8cro:P (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q8TZI3 38709902
    784983 8crp:A (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784984 8crp:B (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784985 8crp:B (2.0) BS02 VJL ? GO:0005576 ... P22629 N/A
    784986 8crp:C (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784987 8crp:D (2.0) BS01 VJL ? GO:0005576 ... P22629 N/A
    784988 8crp:D (2.0) BS02 VJL ? GO:0005576 ... P22629 N/A
    784989 8crq:B (3.2) BS01 CLR ? GO:0016020 ... P02724 35835865
    784990 8crq:C (3.2) BS01 CLR ? GO:0005452 ... P02730 35835865
    784991 8crq:C (3.2) BS02 PIO ? GO:0005452 ... P02730 35835865
    784992 8crq:C (3.2) BS03 PIO ? GO:0005452 ... P02730 35835865
    784993 8crq:E (3.2) BS01 CLR ? GO:0005452 ... P02730 35835865
    784994 8crq:E (3.2) BS02 PIO ? GO:0005452 ... P02730 35835865
    784995 8crr:C (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    784996 8crr:C (3.0) BS02 PIO ? GO:0005452 ... P02730 35835865
    784997 8crr:C (3.0) BS03 PIO ? GO:0005452 ... P02730 35835865
    784998 8crr:E (3.0) BS01 PIO ? GO:0005452 ... P02730 35835865
    784999 8crr:E (3.0) BS02 CLR ? GO:0005452 ... P02730 35835865
    785000 8crr:E (3.0) BS03 PIO ? GO:0005452 ... P02730 35835865
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).