SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    784801 8cdl:l (2.72) BS01 rna ? GO:0000462 ... P0CX40 38030725
    784802 8cdl:m (2.72) BS01 rna ? GO:0000462 ... O13516 38030725
    784803 8cdl:n (2.72) BS01 rna ? GO:0000054 ... Q08745 38030725
    784804 8cdl:o (2.72) BS01 rna ? GO:0000028 ... P0CX47 38030725
    784805 8cdl:p (2.72) BS01 rna ? GO:0000462 ... P05756 38030725
    784806 8cdl:p (2.72) BS02 rna ? GO:0000462 ... P05756 38030725
    784807 8cdl:q (2.72) BS01 rna ? GO:0000028 ... P06367 38030725
    784808 8cdl:q (2.72) BS02 rna ? GO:0000028 ... P06367 38030725
    784809 8cdl:q (2.72) BS03 MG ? GO:0000028 ... P06367 38030725
    784810 8cdl:r (2.72) BS01 rna ? GO:0000054 ... Q01855 38030725
    784811 8cdl:s (2.72) BS01 rna ? GO:0000462 ... P0CX51 38030725
    784812 8cdl:t (2.72) BS01 rna ? GO:0000028 ... P02407 38030725
    784813 8cdl:u (2.72) BS01 rna ? GO:0000054 ... P0CX55 38030725
    784814 8cdl:v (2.72) BS01 rna ? GO:0000054 ... P07280 38030725
    784815 8cdl:w (2.72) BS01 rna ? GO:0000462 ... P38701 38030725
    784816 8cdl:y (2.72) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    784817 8cdl:z (2.72) BS01 rna ? GO:0000462 ... P0CX29 38030725
    784818 8cdm:A (2.35) BS01 KQ0 ? GO:0000146 ... Q8IDR3 37308472
    784819 8cdn:A (2.55) BS01 dna ? GO:0000978 ... O15178 39952925
    784820 8cdn:A (2.55) BS02 dna ? GO:0000978 ... O15178 39952925
    784821 8cdo:A (1.32) BS01 GLC ? GO:0015833 ... A5WYD2 38058289
    784822 8cdo:A (1.32) BS02 FRU ? GO:0015833 ... A5WYD2 38058289
    784823 8cdo:A (1.32) BS03 GLC ? GO:0015833 ... A5WYD2 38058289
    784824 8cdo:A (1.32) BS04 FRU ? GO:0015833 ... A5WYD2 38058289
    784825 8cdo:A (1.32) BS05 BNX ? GO:0015833 ... A5WYD2 38058289
    784826 8cdo:A (1.32) BS06 ALX ? GO:0015833 ... A5WYD2 38058289
    784827 8cdq:A (2.21) BS01 AGS ? GO:0000146 ... Q8IDR3 37308472
    784828 8cdq:A (2.21) BS02 MG ? GO:0000146 ... Q8IDR3 37308472
    784829 8cdq:A (2.21) BS03 KQ0 ? GO:0000146 ... Q8IDR3 37308472
    784830 8cdr:0 (2.04) BS01 rna ? GO:0000462 ... P0CX31 38030725
    784831 8cdr:1 (2.04) BS01 rna ? GO:0002181 ... Q3E792 38030725
    784832 8cdr:2 (2.04) BS01 rna ? GO:0000054 ... P39938 38030725
    784833 8cdr:2 (2.04) BS02 ZN ? GO:0000054 ... P39938 38030725
    784834 8cdr:3 (2.04) BS01 rna ? GO:0000028 ... P35997 38030725
    784835 8cdr:4 (2.04) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    784836 8cdr:5 (2.04) BS01 rna ? GO:0002181 ... P41057 38030725
    784837 8cdr:5 (2.04) BS02 ZN ? GO:0002181 ... P41057 38030725
    784838 8cdr:6 (2.04) BS01 rna ? GO:0002181 ... P0CX33 38030725
    784839 8cdr:7 (2.04) BS01 rna ? GO:0001965 ... P38011 38030725
    784840 8cdr:8 (2.04) BS01 rna ? GO:0000028 ... P05759 38030725
    784841 8cdr:8 (2.04) BS02 ZN ? GO:0000028 ... P05759 38030725
    784842 8cdr:A (2.04) BS01 rna ? GO:0000470 ... P26784 38030725
    784843 8cdr:Aa (2.04) BS01 rna 3.6.5.- GO:0003746 ... P32324 38030725
    784844 8cdr:Aa (2.04) BS02 rna 3.6.5.- GO:0003746 ... P32324 38030725
    784845 8cdr:Aa (2.04) BS03 rna 3.6.5.- GO:0003746 ... P32324 38030725
    784846 8cdr:Aa (2.04) BS04 GDP 3.6.5.- GO:0003746 ... P32324 38030725
    784847 8cdr:Aa (2.04) BS05 SO1 3.6.5.- GO:0003746 ... P32324 38030725
    784848 8cdr:B (2.04) BS01 rna ? GO:0000448 ... P05740 38030725
    784849 8cdr:B (2.04) BS02 rna ? GO:0000448 ... P05740 38030725
    784850 8cdr:C (2.04) BS01 rna ? GO:0002181 ... P0CX49 38030725
    784851 8cdr:D (2.04) BS01 rna ? GO:0002181 ... P0CX82 38030725
    784852 8cdr:D (2.04) BS02 rna ? GO:0002181 ... P0CX82 38030725
    784853 8cdr:DD (2.04) BS01 rna ? GO:0000027 ... P05317 38030725
    784854 8cdr:E (2.04) BS01 rna ? GO:0002181 ... P0CX23 38030725
    784855 8cdr:E (2.04) BS02 rna ? GO:0002181 ... P0CX23 38030725
    784856 8cdr:EE (2.04) BS01 rna ? GO:0002181 ... P0CX45 38030725
    784857 8cdr:EE (2.04) BS02 rna ? GO:0002181 ... P0CX45 38030725
    784858 8cdr:EE (2.04) BS03 MG ? GO:0002181 ... P0CX45 38030725
    784859 8cdr:Ee (2.04) BS01 rna ? GO:0000027 ... P0CX53 38030725
    784860 8cdr:F (2.04) BS01 rna ? GO:0002181 ... Q02753 38030725
    784861 8cdr:F (2.04) BS02 rna ? GO:0002181 ... Q02753 38030725
    784862 8cdr:FF (2.04) BS01 rna ? GO:0000027 ... P14126 38030725
    784863 8cdr:G (2.04) BS01 rna ? GO:0002181 ... P05749 38030725
    784864 8cdr:GG (2.04) BS01 rna ? GO:0002181 ... P10664 38030725
    784865 8cdr:GG (2.04) BS02 rna ? GO:0002181 ... P10664 38030725
    784866 8cdr:H (2.04) BS01 rna ? GO:0002181 ... P0CX41 38030725
    784867 8cdr:H (2.04) BS02 rna ? GO:0002181 ... P0CX41 38030725
    784868 8cdr:HH (2.04) BS01 rna ? GO:0000027 ... P26321 38030725
    784869 8cdr:HH (2.04) BS02 rna ? GO:0000027 ... P26321 38030725
    784870 8cdr:I (2.04) BS01 rna ? GO:0002181 ... P04449 38030725
    784871 8cdr:II (2.04) BS01 rna ? GO:0000027 ... Q02326 38030725
    784872 8cdr:J (2.04) BS01 rna ? GO:0000027 ... P04456 38030725
    784873 8cdr:J (2.04) BS02 rna ? GO:0000027 ... P04456 38030725
    784874 8cdr:JJ (2.04) BS01 rna ? GO:0000463 ... P05737 38030725
    784875 8cdr:JJ (2.04) BS02 rna ? GO:0000463 ... P05737 38030725
    784876 8cdr:K (2.04) BS01 rna ? GO:0002181 ... P05743 38030725
    784877 8cdr:K (2.04) BS02 rna ? GO:0002181 ... P05743 38030725
    784878 8cdr:KK (2.04) BS01 rna ? GO:0000470 ... P17076 38030725
    784879 8cdr:KK (2.04) BS02 rna ? GO:0000470 ... P17076 38030725
    784880 8cdr:L (2.04) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    784881 8cdr:LL (2.04) BS01 rna ? GO:0002181 ... P05738 38030725
    784882 8cdr:M (2.04) BS01 rna ? GO:0002181 ... P02406 38030725
    784883 8cdr:MM (2.04) BS01 rna ? GO:0000027 ... P41805 38030725
    784884 8cdr:MM (2.04) BS02 rna ? GO:0000027 ... P41805 38030725
    784885 8cdr:MM (2.04) BS03 rna ? GO:0000027 ... P41805 38030725
    784886 8cdr:N (2.04) BS01 rna ? GO:0002181 ... P05747 38030725
    784887 8cdr:NN (2.04) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    784888 8cdr:NN (2.04) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    784889 8cdr:NN (2.04) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    784890 8cdr:O (2.04) BS01 rna ? GO:0002181 ... P14120 38030725
    784891 8cdr:OO (2.04) BS01 rna ? GO:0002181 ... Q12690 38030725
    784892 8cdr:OO (2.04) BS02 rna ? GO:0002181 ... Q12690 38030725
    784893 8cdr:P (2.04) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    784894 8cdr:PP (2.04) BS01 rna ? GO:0000027 ... P36105 38030725
    784895 8cdr:Q (2.04) BS01 rna ? GO:0002181 ... P38061 38030725
    784896 8cdr:QQ (2.04) BS01 rna ? GO:0000470 ... P05748 38030725
    784897 8cdr:QQ (2.04) BS02 rna ? GO:0000470 ... P05748 38030725
    784898 8cdr:R (2.04) BS01 rna ? GO:0000027 ... P05744 38030725
    784899 8cdr:S (2.04) BS01 rna ? GO:0002181 ... P87262 38030725
    784900 8cdr:S (2.04) BS02 ZN ? GO:0002181 ... P87262 38030725
    784901 8cdr:T (2.04) BS01 rna ? GO:0000463 ... P0CX84 38030725
    784902 8cdr:T (2.04) BS02 rna ? GO:0000463 ... P0CX84 38030725
    784903 8cdr:U (2.04) BS01 rna ? GO:0000470 ... P05745 38030725
    784904 8cdr:V (2.04) BS01 rna ? GO:0000448 ... P49166 38030725
    784905 8cdr:V (2.04) BS02 rna ? GO:0000448 ... P49166 38030725
    784906 8cdr:V (2.04) BS03 ZN ? GO:0000448 ... P49166 38030725
    784907 8cdr:W (2.04) BS01 rna ? GO:0002181 ... P49167 38030725
    784908 8cdr:X (2.04) BS01 rna ? GO:0002181 ... P04650 38030725
    784909 8cdr:X (2.04) BS02 rna ? GO:0002181 ... P04650 38030725
    784910 8cdr:Y (2.04) BS01 rna ? GO:0000027 ... P0CH08 38030725
    784911 8cdr:Y (2.04) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    784912 8cdr:a (2.04) BS01 rna ? GO:0002181 ... P0CX27 38030725
    784913 8cdr:a (2.04) BS02 rna ? GO:0002181 ... P0CX27 38030725
    784914 8cdr:a (2.04) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    784915 8cdr:b (2.04) BS01 rna ? GO:0002181 ... P0CX25 38030725
    784916 8cdr:b (2.04) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    784917 8cdr:d (2.04) BS01 rna ? GO:0000028 ... P32905 38030725
    784918 8cdr:e (2.04) BS01 rna ? GO:0000462 ... P33442 38030725
    784919 8cdr:f (2.04) BS01 rna ? GO:0000054 ... P25443 38030725
    784920 8cdr:g (2.04) BS01 rna ? GO:0000054 ... P05750 38030725
    784921 8cdr:h (2.04) BS01 rna ? GO:0002181 ... P0CX35 38030725
    784922 8cdr:i (2.04) BS01 rna ? GO:0000054 ... P26783 38030725
    784923 8cdr:j (2.04) BS01 rna ? GO:0000462 ... P0CX37 38030725
    784924 8cdr:k (2.04) BS01 rna ? GO:0002181 ... P26786 38030725
    784925 8cdr:l (2.04) BS01 rna ? GO:0000462 ... P0CX40 38030725
    784926 8cdr:l (2.04) BS02 rna ? GO:0000462 ... P0CX40 38030725
    784927 8cdr:m (2.04) BS01 rna ? GO:0000462 ... O13516 38030725
    784928 8cdr:n (2.04) BS01 rna ? GO:0000054 ... Q08745 38030725
    784929 8cdr:o (2.04) BS01 rna ? GO:0000028 ... P0CX47 38030725
    784930 8cdr:p (2.04) BS01 rna ? GO:0000462 ... P05756 38030725
    784931 8cdr:p (2.04) BS02 rna ? GO:0000462 ... P05756 38030725
    784932 8cdr:q (2.04) BS01 rna ? GO:0000028 ... P06367 38030725
    784933 8cdr:r (2.04) BS01 rna ? GO:0000054 ... Q01855 38030725
    784934 8cdr:s (2.04) BS01 rna ? GO:0000462 ... P0CX51 38030725
    784935 8cdr:t (2.04) BS01 rna ? GO:0000028 ... P02407 38030725
    784936 8cdr:u (2.04) BS01 rna ? GO:0000054 ... P0CX55 38030725
    784937 8cdr:v (2.04) BS01 rna ? GO:0000054 ... P07280 38030725
    784938 8cdr:w (2.04) BS01 rna ? GO:0000462 ... P38701 38030725
    784939 8cdr:y (2.04) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    784940 8cdr:z (2.04) BS01 rna ? GO:0000462 ... P0CX29 38030725
    784941 8cdu:C (3.1) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    784942 8cdu:C (3.1) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    784943 8cdu:D (3.1) BS01 rna ? GO:0003735 ... P21464 38326618
    784944 8cdu:E (3.1) BS01 rna ? GO:0003676 ... P21465 38326618
    784945 8cdu:F (3.1) BS01 rna ? GO:0003723 ... P21466 38326618
    784946 8cdu:G (3.1) BS01 rna ? GO:0003723 ... P21467 38326618
    784947 8cdu:H (3.1) BS01 rna ? GO:0000049 ... P21469 38326618
    784948 8cdu:I (3.1) BS01 rna ? GO:0003735 ... P12879 38326618
    784949 8cdu:J (3.1) BS01 rna ? GO:0003723 ... P21470 38326618
    784950 8cdu:K (3.1) BS01 rna ? GO:0000049 ... P21471 38326618
    784951 8cdu:L (3.1) BS01 rna ? GO:0000049 ... P21472 38326618
    784952 8cdu:M (3.1) BS01 rna ? GO:0000049 ... P20282 38326618
    784953 8cdu:N (3.1) BS01 rna ? GO:0003735 ... P12878 38326618
    784954 8cdu:O (3.1) BS01 rna ? GO:0003735 ... P21473 38326618
    784955 8cdu:P (3.1) BS01 rna ? GO:0003735 ... P21474 38326618
    784956 8cdu:Q (3.1) BS01 rna ? GO:0003735 ... P12874 38326618
    784957 8cdu:R (3.1) BS01 rna ? GO:0003723 ... P21476 38326618
    784958 8cdu:S (3.1) BS01 rna ? GO:0003723 ... P21477 38326618
    784959 8cdu:T (3.1) BS01 rna ? GO:0003735 ... P21468 38326618
    784960 8cdu:U (3.1) BS01 rna ? GO:0003735 ... P21475 38326618
    784961 8cdu:V (3.1) BS01 rna ? GO:0003735 ... P04969 38326618
    784962 8cdv:C (4.73) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    784963 8cdv:C (4.73) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    784964 8cdv:F (4.73) BS01 rna ? GO:0003723 ... P21466 38326618
    784965 8cdv:G (4.73) BS01 rna ? GO:0003723 ... P21467 38326618
    784966 8cdv:H (4.73) BS01 rna ? GO:0000049 ... P21469 38326618
    784967 8cdv:H (4.73) BS02 rna ? GO:0000049 ... P21469 38326618
    784968 8cdv:I (4.73) BS01 rna ? GO:0003735 ... P12879 38326618
    784969 8cdv:J (4.73) BS01 rna ? GO:0003723 ... P21470 38326618
    784970 8cdv:K (4.73) BS01 rna ? GO:0000049 ... P21471 38326618
    784971 8cdv:L (4.73) BS01 rna ? GO:0000049 ... P21472 38326618
    784972 8cdv:M (4.73) BS01 rna ? GO:0000049 ... P20282 38326618
    784973 8cdv:O (4.73) BS01 rna ? GO:0003735 ... P21473 38326618
    784974 8cdv:P (4.73) BS01 rna ? GO:0003735 ... P21474 38326618
    784975 8cdv:Q (4.73) BS01 rna ? GO:0003735 ... P12874 38326618
    784976 8cdv:R (4.73) BS01 rna ? GO:0003723 ... P21476 38326618
    784977 8cdv:S (4.73) BS01 rna ? GO:0003723 ... P21477 38326618
    784978 8cdv:T (4.73) BS01 rna ? GO:0003735 ... P21468 38326618
    784979 8cdv:U (4.73) BS01 rna ? GO:0003735 ... P21475 38326618
    784980 8cdv:V (4.73) BS01 rna ? GO:0003735 ... P04969 38326618
    784981 8cdw:A (1.941) BS01 UES 2.7.11.1 GO:0004672 ... Q92918 37531921
    784982 8cdw:B (1.941) BS01 UES 2.7.11.1 GO:0004672 ... Q92918 37531921
    784983 8cdx:AAA (1.335) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784984 8cdx:AAA (1.335) BS02 UE7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784985 8cdx:BBB (1.335) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784986 8cdx:BBB (1.335) BS02 UE7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784987 8cdz:AAA (1.44) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784988 8cdz:AAA (1.44) BS02 U7M 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784989 8cdz:BBB (1.44) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784990 8cdz:BBB (1.44) BS02 U7M 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 38067512
    784991 8ce3:A (1.89) BS01 UE0 2.4.1.155 GO:0030144 ... Q09328 N/A
    784992 8ce5:A (3.62) BS01 MG 7.6.2.5 GO:0005515 ... P33931 37626034
    784993 8ce5:A (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    784994 8ce5:A (3.62) BS03 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    784995 8ce5:a (3.62) BS01 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    784996 8ce5:a (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    784997 8ce5:a (3.62) BS03 MG 7.6.2.5 GO:0005515 ... P33931 37626034
    784998 8cec:C (3.57) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    784999 8cec:C (3.57) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    785000 8cec:D (3.57) BS01 rna ? GO:0003735 ... P21464 38326618

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).