SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785001 8cec:F (3.57) BS01 rna ? GO:0003723 ... P21466 38326618
    785002 8cec:G (3.57) BS01 rna ? GO:0003723 ... P21467 38326618
    785003 8cec:H (3.57) BS01 rna ? GO:0003676 ... P21465 38326618
    785004 8cec:I (3.57) BS01 rna ? GO:0003735 ... P12879 38326618
    785005 8cec:K (3.57) BS01 rna ? GO:0000049 ... P21469 38326618
    785006 8cec:L (3.57) BS01 rna ? GO:0000049 ... P21472 38326618
    785007 8cec:N (3.57) BS01 rna ? GO:0003723 ... P21470 38326618
    785008 8cec:O (3.57) BS01 rna ? GO:0003735 ... P21473 38326618
    785009 8cec:P (3.57) BS01 rna ? GO:0003735 ... P21474 38326618
    785010 8cec:Q (3.57) BS01 rna ? GO:0003735 ... P12874 38326618
    785011 8cec:R (3.57) BS01 rna ? GO:0000049 ... P21471 38326618
    785012 8cec:S (3.57) BS01 rna ? GO:0003723 ... P21477 38326618
    785013 8cec:T (3.57) BS01 rna ? GO:0003735 ... P21468 38326618
    785014 8cec:U (3.57) BS01 rna ? GO:0003735 ... P21475 38326618
    785015 8cec:V (3.57) BS01 rna ? GO:0003735 ... P04969 38326618
    785016 8cec:X (3.57) BS01 rna ? GO:0000049 ... P20282 38326618
    785017 8cec:Y (3.57) BS01 rna ? GO:0003735 ... P12878 38326618
    785018 8cec:a (3.57) BS01 rna ? GO:0003723 ... P21476 38326618
    785019 8ced:C (4.15) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    785020 8ced:C (4.15) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    785021 8ced:D (4.15) BS01 rna ? GO:0003735 ... P21464 38326618
    785022 8ced:E (4.15) BS01 rna ? GO:0003676 ... P21465 38326618
    785023 8ced:F (4.15) BS01 rna ? GO:0003723 ... P21466 38326618
    785024 8ced:G (4.15) BS01 rna ? GO:0003723 ... P21467 38326618
    785025 8ced:H (4.15) BS01 rna ? GO:0000049 ... P21469 38326618
    785026 8ced:I (4.15) BS01 rna ? GO:0003735 ... P12879 38326618
    785027 8ced:J (4.15) BS01 rna ? GO:0003723 ... P21470 38326618
    785028 8ced:K (4.15) BS01 rna ? GO:0000049 ... P21471 38326618
    785029 8ced:L (4.15) BS01 rna ? GO:0000049 ... P21472 38326618
    785030 8ced:M (4.15) BS01 rna ? GO:0000049 ... P20282 38326618
    785031 8ced:N (4.15) BS01 rna ? GO:0003735 ... P12878 38326618
    785032 8ced:O (4.15) BS01 rna ? GO:0003735 ... P21473 38326618
    785033 8ced:P (4.15) BS01 rna ? GO:0003735 ... P21474 38326618
    785034 8ced:Q (4.15) BS01 rna ? GO:0003735 ... P12874 38326618
    785035 8ced:R (4.15) BS01 rna ? GO:0003723 ... P21476 38326618
    785036 8ced:S (4.15) BS01 rna ? GO:0003723 ... P21477 38326618
    785037 8ced:T (4.15) BS01 rna ? GO:0003735 ... P21468 38326618
    785038 8ced:U (4.15) BS01 rna ? GO:0003735 ... P21475 38326618
    785039 8ced:V (4.15) BS01 rna ? GO:0003735 ... P04969 38326618
    785040 8cee:C (3.7) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    785041 8cee:C (3.7) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    785042 8cee:D (3.7) BS01 rna ? GO:0003735 ... P21464 38326618
    785043 8cee:E (3.7) BS01 rna ? GO:0003676 ... P21465 38326618
    785044 8cee:F (3.7) BS01 rna ? GO:0003723 ... P21466 38326618
    785045 8cee:G (3.7) BS01 rna ? GO:0003723 ... P21467 38326618
    785046 8cee:H (3.7) BS01 rna ? GO:0000049 ... P21469 38326618
    785047 8cee:I (3.7) BS01 rna ? GO:0003735 ... P12879 38326618
    785048 8cee:J (3.7) BS01 rna ? GO:0003723 ... P21470 38326618
    785049 8cee:K (3.7) BS01 rna ? GO:0000049 ... P21471 38326618
    785050 8cee:L (3.7) BS01 rna ? GO:0000049 ... P21472 38326618
    785051 8cee:M (3.7) BS01 rna ? GO:0000049 ... P20282 38326618
    785052 8cee:N (3.7) BS01 rna ? GO:0003735 ... P12878 38326618
    785053 8cee:O (3.7) BS01 rna ? GO:0003735 ... P21473 38326618
    785054 8cee:P (3.7) BS01 rna ? GO:0003735 ... P21474 38326618
    785055 8cee:Q (3.7) BS01 rna ? GO:0003735 ... P12874 38326618
    785056 8cee:R (3.7) BS01 rna ? GO:0003723 ... P21476 38326618
    785057 8cee:S (3.7) BS01 rna ? GO:0003723 ... P21477 38326618
    785058 8cee:T (3.7) BS01 rna ? GO:0003735 ... P21468 38326618
    785059 8cee:U (3.7) BS01 rna ? GO:0003735 ... P21475 38326618
    785060 8cee:V (3.7) BS01 rna ? GO:0003735 ... P04969 38326618
    785061 8cef:C (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785062 8cef:C (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785063 8cef:C (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785064 8cef:C (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785065 8cef:D (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785066 8cef:D (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785067 8cef:D (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785068 8cef:D (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785069 8cef:G (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785070 8cef:G (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785071 8cef:G (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785072 8cef:G (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785073 8cef:H (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785074 8cef:H (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785075 8cef:H (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785076 8cef:H (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785077 8cef:J (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785078 8cef:J (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785079 8cef:J (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785080 8cef:J (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785081 8cef:K (2.486) BS01 dna ? GO:0003700 ... O08580 37503845
    785082 8cef:K (2.486) BS02 dna ? GO:0003700 ... O08580 37503845
    785083 8cef:K (2.486) BS03 ZN ? GO:0003700 ... O08580 37503845
    785084 8cef:K (2.486) BS04 ZN ? GO:0003700 ... O08580 37503845
    785085 8ceh:0 (2.05) BS01 rna ? GO:0000462 ... P0CX31 38030725
    785086 8ceh:1 (2.05) BS01 rna ? GO:0002181 ... Q3E792 38030725
    785087 8ceh:2 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    785088 8ceh:2 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    785089 8ceh:3 (2.05) BS01 rna ? GO:0000028 ... P35997 38030725
    785090 8ceh:4 (2.05) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    785091 8ceh:5 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    785092 8ceh:5 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    785093 8ceh:6 (2.05) BS01 rna ? GO:0002181 ... P0CX33 38030725
    785094 8ceh:7 (2.05) BS01 rna ? GO:0001965 ... P38011 38030725
    785095 8ceh:8 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    785096 8ceh:A (2.05) BS01 rna ? GO:0000470 ... P26784 38030725
    785097 8ceh:Aa (2.05) BS01 rna ? GO:0003924 ... N/A 38030725
    785098 8ceh:Aa (2.05) BS02 rna ? GO:0003924 ... N/A 38030725
    785099 8ceh:Aa (2.05) BS03 rna ? GO:0003924 ... N/A 38030725
    785100 8ceh:Aa (2.05) BS04 GDP ? GO:0003924 ... N/A 38030725
    785101 8ceh:Aa (2.05) BS05 SO1 ? GO:0003924 ... N/A 38030725
    785102 8ceh:B (2.05) BS01 rna ? GO:0000448 ... P05740 38030725
    785103 8ceh:B (2.05) BS02 rna ? GO:0000448 ... P05740 38030725
    785104 8ceh:C (2.05) BS01 rna ? GO:0002181 ... P0CX49 38030725
    785105 8ceh:D (2.05) BS01 rna ? GO:0002181 ... P0CX82 38030725
    785106 8ceh:D (2.05) BS02 rna ? GO:0002181 ... P0CX82 38030725
    785107 8ceh:DD (2.05) BS01 rna ? GO:0000027 ... P05317 38030725
    785108 8ceh:E (2.05) BS01 rna ? GO:0002181 ... P0CX23 38030725
    785109 8ceh:E (2.05) BS02 rna ? GO:0002181 ... P0CX23 38030725
    785110 8ceh:EE (2.05) BS01 rna ? GO:0002181 ... P0CX45 38030725
    785111 8ceh:EE (2.05) BS02 rna ? GO:0002181 ... P0CX45 38030725
    785112 8ceh:Ee (2.05) BS01 rna ? GO:0000027 ... P0CX53 38030725
    785113 8ceh:F (2.05) BS01 rna ? GO:0002181 ... Q02753 38030725
    785114 8ceh:F (2.05) BS02 rna ? GO:0002181 ... Q02753 38030725
    785115 8ceh:FF (2.05) BS01 rna ? GO:0000027 ... P14126 38030725
    785116 8ceh:G (2.05) BS01 rna ? GO:0002181 ... P05749 38030725
    785117 8ceh:GG (2.05) BS01 rna ? GO:0002181 ... P10664 38030725
    785118 8ceh:GG (2.05) BS02 rna ? GO:0002181 ... P10664 38030725
    785119 8ceh:H (2.05) BS01 rna ? GO:0002181 ... P0CX41 38030725
    785120 8ceh:HH (2.05) BS01 rna ? GO:0000027 ... P26321 38030725
    785121 8ceh:HH (2.05) BS02 rna ? GO:0000027 ... P26321 38030725
    785122 8ceh:I (2.05) BS01 rna ? GO:0002181 ... P04449 38030725
    785123 8ceh:II (2.05) BS01 rna ? GO:0000027 ... Q02326 38030725
    785124 8ceh:J (2.05) BS01 rna ? GO:0000027 ... P04456 38030725
    785125 8ceh:J (2.05) BS02 rna ? GO:0000027 ... P04456 38030725
    785126 8ceh:JJ (2.05) BS01 rna ? GO:0000463 ... P05737 38030725
    785127 8ceh:JJ (2.05) BS02 rna ? GO:0000463 ... P05737 38030725
    785128 8ceh:K (2.05) BS01 rna ? GO:0002181 ... P05743 38030725
    785129 8ceh:K (2.05) BS02 rna ? GO:0002181 ... P05743 38030725
    785130 8ceh:KK (2.05) BS01 rna ? GO:0000470 ... P17076 38030725
    785131 8ceh:KK (2.05) BS02 rna ? GO:0000470 ... P17076 38030725
    785132 8ceh:L (2.05) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    785133 8ceh:LL (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    785134 8ceh:M (2.05) BS01 rna ? GO:0002181 ... P02406 38030725
    785135 8ceh:MM (2.05) BS01 rna ? GO:0000027 ... P41805 38030725
    785136 8ceh:MM (2.05) BS02 rna ? GO:0000027 ... P41805 38030725
    785137 8ceh:N (2.05) BS01 rna ? GO:0002181 ... P05747 38030725
    785138 8ceh:NN (2.05) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    785139 8ceh:NN (2.05) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    785140 8ceh:NN (2.05) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    785141 8ceh:O (2.05) BS01 rna ? GO:0002181 ... P14120 38030725
    785142 8ceh:OO (2.05) BS01 rna ? GO:0002181 ... Q12690 38030725
    785143 8ceh:OO (2.05) BS02 rna ? GO:0002181 ... Q12690 38030725
    785144 8ceh:P (2.05) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    785145 8ceh:PP (2.05) BS01 rna ? GO:0000027 ... P36105 38030725
    785146 8ceh:Q (2.05) BS01 rna ? GO:0002181 ... P38061 38030725
    785147 8ceh:QQ (2.05) BS01 rna ? GO:0000470 ... P05748 38030725
    785148 8ceh:QQ (2.05) BS02 rna ? GO:0000470 ... P05748 38030725
    785149 8ceh:R (2.05) BS01 rna ? GO:0000027 ... P05744 38030725
    785150 8ceh:S (2.05) BS01 rna ? GO:0002181 ... P87262 38030725
    785151 8ceh:S (2.05) BS02 ZN ? GO:0002181 ... P87262 38030725
    785152 8ceh:T (2.05) BS01 rna ? GO:0000463 ... P0CX84 38030725
    785153 8ceh:T (2.05) BS02 rna ? GO:0000463 ... P0CX84 38030725
    785154 8ceh:U (2.05) BS01 rna ? GO:0000470 ... P05745 38030725
    785155 8ceh:V (2.05) BS01 rna ? GO:0000448 ... P49166 38030725
    785156 8ceh:V (2.05) BS02 rna ? GO:0000448 ... P49166 38030725
    785157 8ceh:V (2.05) BS03 ZN ? GO:0000448 ... P49166 38030725
    785158 8ceh:W (2.05) BS01 rna ? GO:0002181 ... P49167 38030725
    785159 8ceh:X (2.05) BS01 rna ? GO:0002181 ... P04650 38030725
    785160 8ceh:X (2.05) BS02 rna ? GO:0002181 ... P04650 38030725
    785161 8ceh:Y (2.05) BS01 rna ? GO:0000027 ... P0CH08 38030725
    785162 8ceh:Y (2.05) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    785163 8ceh:a (2.05) BS01 rna ? GO:0002181 ... P0CX27 38030725
    785164 8ceh:a (2.05) BS02 rna ? GO:0002181 ... P0CX27 38030725
    785165 8ceh:a (2.05) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    785166 8ceh:b (2.05) BS01 rna ? GO:0002181 ... P0CX25 38030725
    785167 8ceh:b (2.05) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    785168 8ceh:d (2.05) BS01 rna ? GO:0000028 ... P32905 38030725
    785169 8ceh:e (2.05) BS01 rna ? GO:0000462 ... P33442 38030725
    785170 8ceh:f (2.05) BS01 rna ? GO:0000054 ... P25443 38030725
    785171 8ceh:g (2.05) BS01 rna ? GO:0003723 ... N/A 38030725
    785172 8ceh:h (2.05) BS01 rna ? GO:0002181 ... P0CX35 38030725
    785173 8ceh:i (2.05) BS01 rna ? GO:0000054 ... P26783 38030725
    785174 8ceh:j (2.05) BS01 rna ? GO:0000462 ... P0CX37 38030725
    785175 8ceh:k (2.05) BS01 rna ? GO:0002181 ... P26786 38030725
    785176 8ceh:l (2.05) BS01 rna ? GO:0000462 ... P0CX40 38030725
    785177 8ceh:l (2.05) BS02 rna ? GO:0000462 ... P0CX40 38030725
    785178 8ceh:m (2.05) BS01 rna ? GO:0000462 ... O13516 38030725
    785179 8ceh:n (2.05) BS01 rna ? GO:0000054 ... Q08745 38030725
    785180 8ceh:o (2.05) BS01 rna ? GO:0000028 ... P0CX47 38030725
    785181 8ceh:p (2.05) BS01 rna ? GO:0000462 ... P05756 38030725
    785182 8ceh:p (2.05) BS02 rna ? GO:0000462 ... P05756 38030725
    785183 8ceh:q (2.05) BS01 rna ? GO:0000028 ... P06367 38030725
    785184 8ceh:r (2.05) BS01 rna ? GO:0000054 ... Q01855 38030725
    785185 8ceh:s (2.05) BS01 rna ? GO:0000462 ... P0CX51 38030725
    785186 8ceh:t (2.05) BS01 rna ? GO:0000028 ... P02407 38030725
    785187 8ceh:u (2.05) BS01 rna ? GO:0000054 ... P0CX55 38030725
    785188 8ceh:v (2.05) BS01 rna ? GO:0000054 ... P07280 38030725
    785189 8ceh:w (2.05) BS01 rna ? GO:0003723 ... N/A 38030725
    785190 8ceh:y (2.05) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    785191 8ceh:z (2.05) BS01 rna ? GO:0000462 ... P0CX29 38030725
    785192 8cej:A (2.1) BS01 MEZ 1.2.1.76 GO:0016491 ... P38947 37207322
    785193 8cej:B (2.1) BS01 MEZ 1.2.1.76 GO:0016491 ... P38947 37207322
    785194 8cej:C (2.1) BS01 OA9 1.2.1.76 GO:0016491 ... P38947 37207322
    785195 8cej:D (2.1) BS01 MEZ 1.2.1.76 GO:0016491 ... P38947 37207322
    785196 8cek:A (2.15) BS01 NAP 1.2.1.76 GO:0016491 ... P38947 37207322
    785197 8cek:B (2.15) BS01 NAP 1.2.1.76 GO:0016491 ... P38947 37207322
    785198 8cek:C (2.15) BS01 NAP 1.2.1.76 GO:0016491 ... P38947 37207322
    785199 8cek:D (2.15) BS01 NAP 1.2.1.76 GO:0016491 ... P38947 37207322
    785200 8cem:B (3.0) BS01 BMA ? GO:0004866 ... Q2UVX4 16831446

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).