SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785001 8crs:A (2.04) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 36841829
    785002 8crs:A (2.04) BS02 1N7 1.18.6.1 GO:0005524 ... P07328 36841829
    785003 8crs:A (2.04) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 36841829
    785004 8crs:B (2.04) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 36841829
    785005 8crs:B (2.04) BS02 1N7 1.18.6.1 GO:0005524 ... P07329 36841829
    785006 8crs:B (2.04) BS03 1N7 1.18.6.1 GO:0005524 ... P07329 36841829
    785007 8crs:B (2.04) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    785008 8crs:B (2.04) BS05 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    785009 8crs:C (2.04) BS01 1N7 1.18.6.1 GO:0005524 ... P07328 36841829
    785010 8crs:C (2.04) BS02 ICS 1.18.6.1 GO:0005524 ... P07328 36841829
    785011 8crs:C (2.04) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 36841829
    785012 8crs:D (2.04) BS01 1N7 1.18.6.1 GO:0005524 ... P07329 36841829
    785013 8crs:D (2.04) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    785014 8crs:D (2.04) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    785015 8crs:D (2.04) BS04 CLF 1.18.6.1 GO:0005524 ... P07329 36841829
    785016 8crs:D (2.04) BS05 1N7 1.18.6.1 GO:0005524 ... P07329 36841829
    785017 8crt:C (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    785018 8crt:E (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    785019 8crv:A (1.6) BS01 OO9 2.7.2.2 GO:0005524 ... P13982 N/A
    785020 8crx:0 (2.78) BS01 rna ? GO:0003735 ... Q6A6J5 36864821
    785021 8crx:0 (2.78) BS02 ZN ? GO:0003735 ... Q6A6J5 36864821
    785022 8crx:1 (2.78) BS01 rna ? GO:0003735 ... Q6A5A1 36864821
    785023 8crx:1 (2.78) BS02 MG ? GO:0003735 ... Q6A5A1 36864821
    785024 8crx:2 (2.78) BS01 rna N/A GO:0003735 ... Q6A7V2 36864821
    785025 8crx:3 (2.78) BS01 rna ? GO:0003735 ... Q6A6Q7 36864821
    785026 8crx:4 (2.78) BS01 rna ? GO:0003735 ... Q6A8B4 36864821
    785027 8crx:4 (2.78) BS02 rna ? GO:0003735 ... Q6A8B4 36864821
    785028 8crx:4 (2.78) BS03 ZN ? GO:0003735 ... Q6A8B4 36864821
    785029 8crx:B (2.78) BS01 rna ? GO:0003735 ... Q6A7J7 36864821
    785030 8crx:D (2.78) BS01 rna ? GO:0003723 ... Q6A6R0 36864821
    785031 8crx:E (2.78) BS01 rna ? GO:0003723 ... Q6A6P3 36864821
    785032 8crx:F (2.78) BS01 rna ? GO:0003735 ... Q6A5M9 36864821
    785033 8crx:G (2.78) BS01 rna ? GO:0003676 ... Q6A6N2 36864821
    785034 8crx:H (2.78) BS01 rna ? GO:0003735 ... Q6A6P0 36864821
    785035 8crx:I (2.78) BS01 rna ? GO:0000049 ... Q6A6L4 36864821
    785036 8crx:J (2.78) BS01 rna ? GO:0003723 ... A0A2B7JN42 36864821
    785037 8crx:J (2.78) BS02 rna ? GO:0003723 ... A0A2B7JN42 36864821
    785038 8crx:K (2.78) BS01 rna ? GO:0003735 ... Q6A6Q9 36864821
    785039 8crx:L (2.78) BS01 rna ? GO:0000049 ... Q6A6L2 36864821
    785040 8crx:M (2.78) BS01 rna N/A GO:0000049 ... Q6A6M5 36864821
    785041 8crx:N (2.78) BS01 rna ? GO:0000049 ... Q6A6Q8 36864821
    785042 8crx:N (2.78) BS02 rna ? GO:0000049 ... Q6A6Q8 36864821
    785043 8crx:O (2.78) BS01 rna ? GO:0003735 ... Q6A7P5 36864821
    785044 8crx:O (2.78) BS02 rna ? GO:0003735 ... Q6A7P5 36864821
    785045 8crx:P (2.78) BS01 rna ? GO:0003735 ... Q6A7S4 36864821
    785046 8crx:Q (2.78) BS01 rna ? GO:0003735 ... Q6A6N5 36864821
    785047 8crx:R (2.78) BS01 rna ? GO:0003735 ... Q6A5N1 36864821
    785048 8crx:S (2.78) BS01 rna ? GO:0003735 ... Q6A6N9 36864821
    785049 8crx:S (2.78) BS02 ZN ? GO:0003735 ... Q6A6N9 36864821
    785050 8crx:T (2.78) BS01 rna ? GO:0003723 ... Q6A9B3 36864821
    785051 8crx:U (2.78) BS01 rna ? GO:0000028 ... Q6A6N0 36864821
    785052 8crx:X (2.78) BS01 rna N/A N/A Q6AAZ0 36864821
    785053 8crx:X (2.78) BS02 rna N/A N/A Q6AAZ0 36864821
    785054 8crx:c (2.78) BS01 rna ? GO:0002181 ... Q6A6M9 36864821
    785055 8crx:c (2.78) BS02 MG ? GO:0002181 ... Q6A6M9 36864821
    785056 8crx:d (2.78) BS01 rna ? GO:0003735 ... Q6A6M6 36864821
    785057 8crx:e (2.78) BS01 rna ? GO:0003735 ... A0A2B7I5M5 36864821
    785058 8crx:f (2.78) BS01 rna ? GO:0000049 ... A0A3E2DDM1 36864821
    785059 8crx:f (2.78) BS02 rna ? GO:0000049 ... A0A3E2DDM1 36864821
    785060 8crx:f (2.78) BS03 rna ? GO:0000049 ... A0A3E2DDM1 36864821
    785061 8crx:g (2.78) BS01 rna ? GO:0002181 ... Q6A6P1 36864821
    785062 8crx:i (2.78) BS01 rna ? GO:0003729 ... A0A2B7I6I7 36864821
    785063 8crx:j (2.78) BS01 rna ? GO:0003735 ... A0A2B7JMZ8 36864821
    785064 8crx:j (2.78) BS02 rna ? GO:0003735 ... A0A2B7JMZ8 36864821
    785065 8crx:k (2.78) BS01 rna ? GO:0003735 ... Q6A6P5 36864821
    785066 8crx:k (2.78) BS02 MG ? GO:0003735 ... Q6A6P5 36864821
    785067 8crx:l (2.78) BS01 rna ? GO:0000049 ... Q6A6N3 36864821
    785068 8crx:l (2.78) BS02 rna ? GO:0000049 ... Q6A6N3 36864821
    785069 8crx:m (2.78) BS01 rna N/A GO:0003735 ... A0A8B2VJI7 36864821
    785070 8crx:n (2.78) BS01 rna ? GO:0003735 ... Q6A6P2 36864821
    785071 8crx:n (2.78) BS02 rna ? GO:0003735 ... Q6A6P2 36864821
    785072 8crx:o (2.78) BS01 rna ? GO:0003735 ... Q6A7T1 36864821
    785073 8crx:o (2.78) BS02 rna ? GO:0003735 ... Q6A7T1 36864821
    785074 8crx:p (2.78) BS01 rna ? GO:0000027 ... Q6A7V3 36864821
    785075 8crx:q (2.78) BS01 rna N/A GO:0003723 ... Q6A9I3 36864821
    785076 8crx:r (2.78) BS01 rna ? GO:0003735 ... Q6A6N1 36864821
    785077 8crx:s (2.78) BS01 rna ? GO:0003735 ... Q6A6M8 36864821
    785078 8crx:t (2.78) BS01 rna N/A GO:0003723 ... Q6A6N7 36864821
    785079 8crx:u (2.78) BS01 rna ? GO:0003723 ... Q6AAC8 36864821
    785080 8crx:u (2.78) BS02 rna ? GO:0003723 ... Q6AAC8 36864821
    785081 8crx:v (2.78) BS01 rna ? GO:0003735 ... Q6A9I2 36864821
    785082 8crx:v (2.78) BS02 rna ? GO:0003735 ... Q6A9I2 36864821
    785083 8crx:w (2.78) BS01 rna ? GO:0003735 ... A0A2B7I7B7 36864821
    785084 8crx:w (2.78) BS02 ZN ? GO:0003735 ... A0A2B7I7B7 36864821
    785085 8crx:x (2.78) BS01 rna ? GO:0003735 ... Q6A6N4 36864821
    785086 8crx:y (2.78) BS01 rna ? GO:0003735 ... Q6A6P4 36864821
    785087 8crx:y (2.78) BS02 rna ? GO:0003735 ... Q6A6P4 36864821
    785088 8crx:z (2.78) BS01 rna ? GO:0003735 ... A0A2B7I771 36864821
    785089 8crx:z (2.78) BS02 ZN ? GO:0003735 ... A0A2B7I771 36864821
    785090 8cs0:A (1.65) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 35969672
    785091 8cs0:A (1.65) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 35969672
    785092 8cs9:L (2.74) BS01 CLR ? GO:0005515 ... Q02094 35835865
    785093 8cs9:L (2.74) BS02 CLR ? GO:0005515 ... Q02094 35835865
    785094 8cs9:Q (2.74) BS01 AJP ? GO:0005515 ... Q02094 35835865
    785095 8cs9:R (2.74) BS01 CLR ? GO:0016020 ... P02724 35835865
    785096 8cs9:V (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    785097 8cs9:V (2.74) BS02 PIO ? GO:0005452 ... P02730 35835865
    785098 8cs9:V (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785099 8cs9:Y (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    785100 8cs9:Y (2.74) BS02 PIO ? GO:0005452 ... P02730 35835865
    785101 8cs9:Y (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785102 8cs9:Z (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    785103 8cs9:Z (2.74) BS02 PIO ? GO:0005452 ... P02730 35835865
    785104 8cs9:Z (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785105 8cs9:b (2.74) BS01 CLR ? GO:0016020 ... P02724 35835865
    785106 8cs9:e (2.74) BS01 PIO ? GO:0005452 ... P02730 35835865
    785107 8cs9:e (2.74) BS02 CLR ? GO:0005452 ... P02730 35835865
    785108 8cs9:e (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785109 8cs9:f (2.74) BS01 PIO ? GO:0005452 ... P02730 35835865
    785110 8cs9:f (2.74) BS02 CLR ? GO:0005452 ... P02730 35835865
    785111 8cs9:f (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785112 8cs9:g (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    785113 8cs9:g (2.74) BS02 PIO ? GO:0005452 ... P02730 35835865
    785114 8cs9:g (2.74) BS03 PIO ? GO:0005452 ... P02730 35835865
    785115 8csb:A (2.25) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    785116 8csb:A (2.25) BS02 CMK ? GO:0000271 ... Q6U8B0 36271007
    785117 8csb:B (2.25) BS01 CMK ? GO:0000271 ... Q6U8B0 36271007
    785118 8csb:B (2.25) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    785119 8csc:A (1.9) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    785120 8csc:A (1.9) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    785121 8csc:B (1.9) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    785122 8csc:B (1.9) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    785123 8csd:A (1.95) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    785124 8csd:A (1.95) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    785125 8csd:B (1.95) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    785126 8csd:B (1.95) BS02 KDO ? GO:0000271 ... Q6U8B0 36271007
    785127 8cse:A (2.3) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    785128 8cse:A (2.3) BS02 PXV ? GO:0000271 ... Q6U8B0 36271007
    785129 8cse:A (2.3) BS03 C5P ? GO:0000271 ... Q6U8B0 36271007
    785130 8cse:B (2.3) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    785131 8cse:B (2.3) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    785132 8csf:A (2.4) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    785133 8csf:A (2.4) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    785134 8csf:A (2.4) BS03 KDO ? GO:0000271 ... Q6U8B0 36271007
    785135 8csf:B (2.4) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    785136 8csf:B (2.4) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    785137 8csf:B (2.4) BS03 KDO ? GO:0000271 ... Q6U8B0 36271007
    785138 8csg:A (2.48) BS01 PWL 2.1.1.320 GO:0000387 ... O14744 36545438
    785139 8csg:A (2.48) BS02 MTA 2.1.1.320 GO:0000387 ... O14744 36545438
    785140 8csh:A (2.25) BS01 dna ? N/A Q9L8I7 35907571
    785141 8csh:A (2.25) BS02 dna ? N/A Q9L8I7 35907571
    785142 8csh:D (2.25) BS01 dna ? N/A Q9L8I7 35907571
    785143 8csh:D (2.25) BS02 dna ? N/A Q9L8I7 35907571
    785144 8cso:A (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785145 8cso:A (2.6) BS02 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785146 8cso:B (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785147 8cso:B (2.6) BS02 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785148 8cso:C (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785149 8cso:D (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785150 8cso:E (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785151 8cso:F (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    785152 8csp:0 (2.66) BS01 rna ? GO:0003735 ... P82930 36482135
    785153 8csp:5 (2.66) BS01 rna 2.1.1.- GO:0000154 ... Q8WVM0 36482135
    785154 8csp:7 (2.66) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785155 8csp:7 (2.66) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785156 8csp:7 (2.66) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785157 8csp:8 (2.66) BS01 rna 2.3.1.39 GO:0003723 ... Q8IVS2 36482135
    785158 8csp:9 (2.66) BS01 rna ? GO:0003723 ... Q8NC60 36482135
    785159 8csp:B (2.66) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785160 8csp:B (2.66) BS02 peptide ? GO:0003735 ... Q9Y399 36482135
    785161 8csp:B (2.66) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    785162 8csp:D (2.66) BS01 rna ? GO:0003723 ... P82675 36482135
    785163 8csp:E (2.66) BS01 rna ? GO:0003735 ... P82932 36482135
    785164 8csp:F (2.66) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785165 8csp:G (2.66) BS01 rna ? GO:0003723 ... P82933 36482135
    785166 8csp:G (2.66) BS02 peptide ? GO:0003723 ... P82933 36482135
    785167 8csp:H (2.66) BS01 rna ? GO:0005739 ... P82664 36482135
    785168 8csp:J (2.66) BS01 rna ? GO:0003723 ... O15235 36482135
    785169 8csp:K (2.66) BS01 rna ? GO:0003723 ... O60783 36482135
    785170 8csp:L (2.66) BS01 rna ? GO:0003723 ... P82914 36482135
    785171 8csp:M (2.66) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785172 8csp:N (2.66) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785173 8csp:O (2.66) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785174 8csp:O (2.66) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785175 8csp:P (2.66) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785176 8csp:P (2.66) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785177 8csp:S (2.66) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785178 8csp:T (2.66) BS01 rna ? GO:0003735 ... P82663 36482135
    785179 8csp:T (2.66) BS02 FES ? GO:0003735 ... P82663 36482135
    785180 8csp:U (2.66) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785181 8csp:W (2.66) BS01 peptide ? GO:0003723 ... Q9Y2Q9 36482135
    785182 8csp:X (2.66) BS01 rna ? GO:0003723 ... P51398 36482135
    785183 8csp:X (2.66) BS02 ATP ? GO:0003723 ... P51398 36482135
    785184 8csp:X (2.66) BS03 GDP ? GO:0003723 ... P51398 36482135
    785185 8csq:0 (2.54) BS01 rna ? GO:0003735 ... P82930 36482135
    785186 8csq:3 (2.54) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    785187 8csq:5 (2.54) BS01 rna 2.1.1.- GO:0000154 ... Q8WVM0 36482135
    785188 8csq:7 (2.54) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785189 8csq:7 (2.54) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785190 8csq:7 (2.54) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785191 8csq:8 (2.54) BS01 rna 2.3.1.39 GO:0003723 ... Q8IVS2 36482135
    785192 8csq:B (2.54) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785193 8csq:B (2.54) BS02 peptide ? GO:0003735 ... Q9Y399 36482135
    785194 8csq:B (2.54) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    785195 8csq:D (2.54) BS01 rna ? GO:0003723 ... P82675 36482135
    785196 8csq:E (2.54) BS01 rna ? GO:0003735 ... P82932 36482135
    785197 8csq:F (2.54) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785198 8csq:G (2.54) BS01 rna ? GO:0003723 ... P82933 36482135
    785199 8csq:G (2.54) BS02 peptide ? GO:0003723 ... P82933 36482135
    785200 8csq:J (2.54) BS01 rna ? GO:0003723 ... O15235 36482135

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).