SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785201 8csq:K (2.54) BS01 rna ? GO:0003723 ... O60783 36482135
    785202 8csq:L (2.54) BS01 rna ? GO:0003723 ... P82914 36482135
    785203 8csq:M (2.54) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785204 8csq:N (2.54) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785205 8csq:O (2.54) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785206 8csq:O (2.54) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785207 8csq:P (2.54) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785208 8csq:P (2.54) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785209 8csq:S (2.54) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785210 8csq:T (2.54) BS01 rna ? GO:0003735 ... P82663 36482135
    785211 8csq:T (2.54) BS02 FES ? GO:0003735 ... P82663 36482135
    785212 8csq:U (2.54) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785213 8csq:V (2.54) BS01 rna ? GO:0000049 ... Q92552 36482135
    785214 8csq:W (2.54) BS01 peptide ? GO:0003723 ... Q9Y2Q9 36482135
    785215 8csq:X (2.54) BS01 rna ? GO:0003723 ... P51398 36482135
    785216 8csq:X (2.54) BS02 ATP ? GO:0003723 ... P51398 36482135
    785217 8csq:X (2.54) BS03 GDP ? GO:0003723 ... P51398 36482135
    785218 8csq:a (2.54) BS01 rna ? GO:0000028 ... O75616 36482135
    785219 8csr:0 (2.54) BS01 rna ? GO:0003735 ... P82930 36482135
    785220 8csr:3 (2.54) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    785221 8csr:5 (2.54) BS01 rna 2.1.1.- GO:0000154 ... Q8WVM0 36482135
    785222 8csr:6 (2.54) BS01 rna ? GO:0005515 ... Q8N0V3 36482135
    785223 8csr:7 (2.54) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785224 8csr:7 (2.54) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785225 8csr:7 (2.54) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785226 8csr:8 (2.54) BS01 rna 2.3.1.39 GO:0003723 ... Q8IVS2 36482135
    785227 8csr:B (2.54) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785228 8csr:B (2.54) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    785229 8csr:D (2.54) BS01 rna ? GO:0003723 ... P82675 36482135
    785230 8csr:E (2.54) BS01 rna ? GO:0003735 ... P82932 36482135
    785231 8csr:F (2.54) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785232 8csr:G (2.54) BS01 rna ? GO:0003723 ... P82933 36482135
    785233 8csr:I (2.54) BS01 rna ? GO:0003723 ... P82912 36482135
    785234 8csr:J (2.54) BS01 rna ? GO:0003723 ... O15235 36482135
    785235 8csr:K (2.54) BS01 rna ? GO:0003723 ... O60783 36482135
    785236 8csr:L (2.54) BS01 rna ? GO:0003723 ... P82914 36482135
    785237 8csr:M (2.54) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785238 8csr:M (2.54) BS02 FES ? GO:0003735 ... Q9Y3D3 36482135
    785239 8csr:N (2.54) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785240 8csr:O (2.54) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785241 8csr:O (2.54) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785242 8csr:P (2.54) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785243 8csr:P (2.54) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785244 8csr:Q (2.54) BS01 rna ? GO:0003723 ... P82921 36482135
    785245 8csr:S (2.54) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785246 8csr:T (2.54) BS01 rna ? GO:0003735 ... P82663 36482135
    785247 8csr:T (2.54) BS02 FES ? GO:0003735 ... P82663 36482135
    785248 8csr:U (2.54) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785249 8csr:V (2.54) BS01 rna ? GO:0000049 ... Q92552 36482135
    785250 8csr:X (2.54) BS01 rna ? GO:0003723 ... P51398 36482135
    785251 8csr:X (2.54) BS02 ATP ? GO:0003723 ... P51398 36482135
    785252 8csr:X (2.54) BS03 GDP ? GO:0003723 ... P51398 36482135
    785253 8css:0 (2.36) BS01 rna ? GO:0003735 ... P82930 36482135
    785254 8css:3 (2.36) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    785255 8css:6 (2.36) BS01 rna ? GO:0005515 ... Q8N0V3 36482135
    785256 8css:7 (2.36) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785257 8css:7 (2.36) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785258 8css:7 (2.36) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785259 8css:8 (2.36) BS01 rna 2.3.1.39 GO:0003723 ... Q8IVS2 36482135
    785260 8css:B (2.36) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785261 8css:B (2.36) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    785262 8css:D (2.36) BS01 rna ? GO:0003723 ... P82675 36482135
    785263 8css:E (2.36) BS01 rna ? GO:0003735 ... P82932 36482135
    785264 8css:F (2.36) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785265 8css:G (2.36) BS01 rna ? GO:0003723 ... P82933 36482135
    785266 8css:I (2.36) BS01 rna ? GO:0003723 ... P82912 36482135
    785267 8css:J (2.36) BS01 rna ? GO:0003723 ... O15235 36482135
    785268 8css:L (2.36) BS01 rna ? GO:0003723 ... P82914 36482135
    785269 8css:L (2.36) BS02 NAD ? GO:0003723 ... P82914 36482135
    785270 8css:M (2.36) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785271 8css:N (2.36) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785272 8css:O (2.36) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785273 8css:O (2.36) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785274 8css:P (2.36) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785275 8css:P (2.36) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785276 8css:Q (2.36) BS01 rna ? GO:0003723 ... P82921 36482135
    785277 8css:S (2.36) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785278 8css:T (2.36) BS01 rna ? GO:0003735 ... P82663 36482135
    785279 8css:T (2.36) BS02 FES ? GO:0003735 ... P82663 36482135
    785280 8css:U (2.36) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785281 8css:V (2.36) BS01 rna ? GO:0000049 ... Q92552 36482135
    785282 8css:X (2.36) BS01 rna ? GO:0003723 ... P51398 36482135
    785283 8css:X (2.36) BS02 ATP ? GO:0003723 ... P51398 36482135
    785284 8css:X (2.36) BS03 GDP ? GO:0003723 ... P51398 36482135
    785285 8cst:0 (2.85) BS01 rna ? GO:0003735 ... P82930 36482135
    785286 8cst:3 (2.85) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    785287 8cst:6 (2.85) BS01 rna ? GO:0005515 ... Q8N0V3 36482135
    785288 8cst:7 (2.85) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785289 8cst:7 (2.85) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785290 8cst:7 (2.85) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785291 8cst:B (2.85) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785292 8cst:B (2.85) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    785293 8cst:D (2.85) BS01 rna ? GO:0003723 ... P82675 36482135
    785294 8cst:E (2.85) BS01 rna ? GO:0003735 ... P82932 36482135
    785295 8cst:F (2.85) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785296 8cst:G (2.85) BS01 rna ? GO:0003723 ... P82933 36482135
    785297 8cst:H (2.85) BS01 rna ? GO:0005739 ... P82664 36482135
    785298 8cst:I (2.85) BS01 rna ? GO:0003723 ... P82912 36482135
    785299 8cst:J (2.85) BS01 rna ? GO:0003723 ... O15235 36482135
    785300 8cst:K (2.85) BS01 rna ? GO:0003723 ... O60783 36482135
    785301 8cst:L (2.85) BS01 rna ? GO:0003723 ... P82914 36482135
    785302 8cst:M (2.85) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785303 8cst:N (2.85) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785304 8cst:O (2.85) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785305 8cst:O (2.85) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785306 8cst:P (2.85) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785307 8cst:P (2.85) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785308 8cst:Q (2.85) BS01 rna ? GO:0003723 ... P82921 36482135
    785309 8cst:S (2.85) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785310 8cst:T (2.85) BS01 rna ? GO:0003735 ... P82663 36482135
    785311 8cst:T (2.85) BS02 FES ? GO:0003735 ... P82663 36482135
    785312 8cst:U (2.85) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785313 8cst:V (2.85) BS01 rna ? GO:0000049 ... Q92552 36482135
    785314 8cst:X (2.85) BS01 rna ? GO:0003723 ... P51398 36482135
    785315 8cst:X (2.85) BS02 ATP ? GO:0003723 ... P51398 36482135
    785316 8cst:X (2.85) BS03 GDP ? GO:0003723 ... P51398 36482135
    785317 8cst:Z (2.85) BS01 rna ? GO:0003735 ... Q9Y291 36482135
    785318 8csu:0 (3.03) BS01 rna ? GO:0003735 ... P82930 36482135
    785319 8csu:3 (3.03) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    785320 8csu:5 (3.03) BS01 rna 2.1.1.- GO:0000154 ... Q8WVM0 36482135
    785321 8csu:6 (3.03) BS01 rna ? GO:0005515 ... Q8N0V3 36482135
    785322 8csu:7 (3.03) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785323 8csu:7 (3.03) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785324 8csu:7 (3.03) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    785325 8csu:B (3.03) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    785326 8csu:B (3.03) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    785327 8csu:D (3.03) BS01 rna ? GO:0003723 ... P82675 36482135
    785328 8csu:E (3.03) BS01 rna ? GO:0003735 ... P82932 36482135
    785329 8csu:E (3.03) BS02 FES ? GO:0003735 ... P82932 36482135
    785330 8csu:F (3.03) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    785331 8csu:G (3.03) BS01 rna ? GO:0003723 ... P82933 36482135
    785332 8csu:I (3.03) BS01 rna ? GO:0003723 ... P82912 36482135
    785333 8csu:J (3.03) BS01 rna ? GO:0003723 ... O15235 36482135
    785334 8csu:K (3.03) BS01 rna ? GO:0003723 ... O60783 36482135
    785335 8csu:L (3.03) BS01 rna ? GO:0003723 ... P82914 36482135
    785336 8csu:M (3.03) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    785337 8csu:N (3.03) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    785338 8csu:O (3.03) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    785339 8csu:O (3.03) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    785340 8csu:P (3.03) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    785341 8csu:P (3.03) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    785342 8csu:Q (3.03) BS01 rna ? GO:0003723 ... P82921 36482135
    785343 8csu:S (3.03) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    785344 8csu:T (3.03) BS01 rna ? GO:0003735 ... P82663 36482135
    785345 8csu:T (3.03) BS02 FES ? GO:0003735 ... P82663 36482135
    785346 8csu:U (3.03) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    785347 8csu:V (3.03) BS01 rna ? GO:0000049 ... Q92552 36482135
    785348 8csu:X (3.03) BS01 rna ? GO:0003723 ... P51398 36482135
    785349 8csu:X (3.03) BS02 ATP ? GO:0003723 ... P51398 36482135
    785350 8csu:X (3.03) BS03 GDP ? GO:0003723 ... P51398 36482135
    785351 8csu:Z (3.03) BS01 rna ? GO:0003735 ... Q9Y291 36482135
    785352 8csx:L (2.4) BS01 CLR ? GO:0005515 ... Q02094 35835865
    785353 8csx:L (2.4) BS02 CLR ? GO:0005515 ... Q02094 35835865
    785354 8csx:Q (2.4) BS01 AJP ? GO:0005515 ... Q02094 35835865
    785355 8csx:Q (2.4) BS02 AJP ? GO:0005515 ... Q02094 35835865
    785356 8csz:D (3.2) BS01 rna N/A N/A N/A 35617371
    785357 8csz:D (3.2) BS02 dna N/A N/A N/A 35617371
    785358 8csz:D (3.2) BS03 dna N/A N/A N/A 35617371
    785359 8csz:D (3.2) BS04 MG N/A N/A N/A 35617371
    785360 8csz:D (3.2) BS05 MG N/A N/A N/A 35617371
    785361 8ct0:A (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785362 8ct0:A (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785363 8ct0:B (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785364 8ct0:B (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785365 8ct0:C (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785366 8ct0:C (2.45) BS02 NAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785367 8ct0:D (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785368 8ct0:D (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785369 8ct0:E (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785370 8ct0:E (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785371 8ct0:F (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785372 8ct0:F (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785373 8ct0:G (2.45) BS01 NAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785374 8ct0:G (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785375 8ct0:G (2.45) BS03 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785376 8ct0:H (2.45) BS01 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785377 8ct0:H (2.45) BS02 FAD 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785378 8ct0:H (2.45) BS03 NAI 1.5.1.36 GO:0010181 ... S4S3E3 N/A
    785379 8ct2:A (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    785380 8ct2:B (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    785381 8ct2:C (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    785382 8ct2:D (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    785383 8ct3:C (3.3) BS01 CLR ? GO:0005452 ... P02730 35835865
    785384 8ct3:C (3.3) BS02 CLR ? GO:0005452 ... P02730 35835865
    785385 8ct3:C (3.3) BS03 PIO ? GO:0005452 ... P02730 35835865
    785386 8ct3:C (3.3) BS04 PIO ? GO:0005452 ... P02730 35835865
    785387 8ct3:E (3.3) BS01 PIO ? GO:0005452 ... P02730 35835865
    785388 8ct3:E (3.3) BS02 CLR ? GO:0005452 ... P02730 35835865
    785389 8ct3:E (3.3) BS03 CLR ? GO:0005452 ... P02730 35835865
    785390 8ct3:E (3.3) BS04 PIO ? GO:0005452 ... P02730 35835865
    785391 8ct4:A (2.17) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785392 8ct4:A (2.17) BS02 OU6 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785393 8ct4:A (2.17) BS03 OU6 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785394 8ct4:B (2.17) BS01 OU6 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785395 8ct4:B (2.17) BS02 OU6 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785396 8ct4:B (2.17) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 N/A
    785397 8ct7:A (2.13) BS01 L3D 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 36867659
    785398 8cta:A (2.93) BS01 L3D 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 36867659
    785399 8cta:A (2.93) BS02 L3D 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 36867659
    785400 8cta:B (2.93) BS01 L3D 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 36867659

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).