SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    78401 2d3c:F (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78402 2d3c:F (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78403 2d3c:F (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78404 2d3c:F (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    78405 2d3c:F (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    78406 2d3c:G (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78407 2d3c:G (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78408 2d3c:G (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78409 2d3c:G (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    78410 2d3c:G (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    78411 2d3c:H (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78412 2d3c:H (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78413 2d3c:H (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78414 2d3c:H (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    78415 2d3c:H (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    78416 2d3c:I (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78417 2d3c:I (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78418 2d3c:I (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78419 2d3c:I (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    78420 2d3c:I (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    78421 2d3c:J (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78422 2d3c:J (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78423 2d3c:J (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    78424 2d3c:J (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    78425 2d3c:J (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    78426 2d3d:A (1.6) BS01 CA ? GO:0003729 ... Q08831 16375924
    78427 2d3g:A (1.7) BS01 peptide ? N/A P0CH28 16462748
    78428 2d3g:B (1.7) BS01 peptide ? N/A P0CH28 16462748
    78429 2d3i:A (2.15) BS01 BCT ? GO:0005506 ... P02789 16301797
    78430 2d3i:A (2.15) BS02 BCT ? GO:0005506 ... P02789 16301797
    78431 2d3k:B (1.9) BS01 ZN 3.1.1.29 GO:0004045 ... O74017 18391411
    78432 2d3l:A (2.3) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78433 2d3l:A (2.3) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78434 2d3l:A (2.3) BS03 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78435 2d3l:A (2.3) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78436 2d3l:A (2.3) BS05 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78437 2d3l:A (2.3) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78438 2d3l:A (2.3) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78439 2d3l:A (2.3) BS08 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78440 2d3l:A (2.3) BS09 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78441 2d3l:A (2.3) BS10 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78442 2d3l:A (2.3) BS11 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78443 2d3l:A (2.3) BS12 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78444 2d3m:A (1.6) BS01 COA 2.3.1.216 GO:0009058 ... Q58VP7 17462571
    78445 2d3m:B (1.6) BS01 COA 2.3.1.216 GO:0009058 ... Q58VP7 17462571
    78446 2d3n:A (1.9) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78447 2d3n:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78448 2d3n:A (1.9) BS03 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78449 2d3n:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78450 2d3n:A (1.9) BS05 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78451 2d3n:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78452 2d3n:A (1.9) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78453 2d3n:A (1.9) BS08 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78454 2d3n:A (1.9) BS09 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78455 2d3n:A (1.9) BS10 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78456 2d3n:A (1.9) BS11 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78457 2d3n:A (1.9) BS12 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78458 2d3n:A (1.9) BS13 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78459 2d3n:A (1.9) BS14 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    78460 2d3n:A (1.9) BS15 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78461 2d3n:A (1.9) BS16 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78462 2d3n:A (1.9) BS17 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    78463 2d3o:1 (3.35) BS01 rna 5.2.1.8 GO:0006457 ... Q9RT21 16271892
    78464 2d3o:R (3.35) BS01 rna ? GO:0003735 ... Q9RXK0 16271892
    78465 2d3o:S (3.35) BS01 rna ? GO:0003723 ... Q9RXJ1 16271892
    78466 2d3o:W (3.35) BS01 rna ? GO:0003735 ... Q9RXJ4 16271892
    78467 2d3p:A (2.8) BS01 CA ? GO:0030246 ... P81517 17251039
    78468 2d3p:A (2.8) BS02 MN ? GO:0030246 ... P81517 17251039
    78469 2d3p:B (2.8) BS01 CA ? GO:0030246 ... P81517 17251039
    78470 2d3p:B (2.8) BS02 MN ? GO:0030246 ... P81517 17251039
    78471 2d3p:C (2.8) BS01 CA ? GO:0030246 ... P81517 17251039
    78472 2d3p:C (2.8) BS02 MN ? GO:0030246 ... P81517 17251039
    78473 2d3p:D (2.8) BS01 CA ? GO:0030246 ... P81517 17251039
    78474 2d3p:D (2.8) BS02 MN ? GO:0030246 ... P81517 17251039
    78475 2d3q:A (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    78476 2d3q:B (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    78477 2d3r:A (2.9) BS01 CA ? GO:0030246 ... P81517 17251039
    78478 2d3r:A (2.9) BS02 MN ? GO:0030246 ... P81517 17251039
    78479 2d3r:B (2.9) BS01 CA ? GO:0030246 ... P81517 17251039
    78480 2d3r:B (2.9) BS02 MN ? GO:0030246 ... P81517 17251039
    78481 2d3r:C (2.9) BS01 CA ? GO:0030246 ... P81517 17251039
    78482 2d3r:C (2.9) BS02 MN ? GO:0030246 ... P81517 17251039
    78483 2d3r:D (2.9) BS01 CA ? GO:0030246 ... P81517 17251039
    78484 2d3r:D (2.9) BS02 MN ? GO:0030246 ... P81517 17251039
    78485 2d3s:A (2.35) BS01 CA ? GO:0030246 ... O24313 16310781
    78486 2d3s:A (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    78487 2d3s:B (2.35) BS01 CA ? GO:0030246 ... O24313 16310781
    78488 2d3s:B (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    78489 2d3s:C (2.35) BS01 CA ? GO:0030246 ... O24313 16310781
    78490 2d3s:C (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    78491 2d3s:D (2.35) BS01 CA ? GO:0030246 ... O24313 16310781
    78492 2d3s:D (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    78493 2d3t:A (3.4) BS01 NAD 1.1.1.35
    4.2.1.17
    5.1.2.3
    5.3.3.8
    GO:0003824 ... P28793 16472743
    78494 2d3t:B (3.4) BS01 NAD 1.1.1.35
    4.2.1.17
    5.1.2.3
    5.3.3.8
    GO:0003824 ... P28793 16472743
    78495 2d3t:C (3.4) BS01 ACO 2.3.1.16 GO:0003988 ... P28790 16472743
    78496 2d3t:D (3.4) BS01 ACO 2.3.1.16 GO:0003988 ... P28790 16472743
    78497 2d3u:A (2.0) BS01 CCT 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.12uM
    78498 2d3u:B (2.0) BS01 CCT 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.12uM
    78499 2d3y:A (1.55) BS01 SF4 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    78500 2d3y:A (1.55) BS02 DU 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    78501 2d3z:A (1.8) BS01 FIH 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.23uM
    78502 2d3z:B (1.8) BS01 FIH 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.23uM
    78503 2d40:A (2.41) BS01 FE 1.13.11.4 GO:0047922 ... Q8X655 16930152
    78504 2d40:B (2.41) BS01 FE 1.13.11.4 GO:0047922 ... Q8X655 16930152
    78505 2d40:C (2.41) BS01 FE 1.13.11.4 GO:0047922 ... Q8X655 16930152
    78506 2d40:D (2.41) BS01 FE 1.13.11.4 GO:0047922 ... Q8X655 16930152
    78507 2d41:A (2.1) BS01 SNH 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.15uM
    78508 2d41:B (2.1) BS01 SNH 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q99AU2 16828488 MOAD: Ki=0.15uM
    78509 2d43:A (2.8) BS01 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78510 2d43:A (2.8) BS02 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78511 2d44:A (2.3) BS01 XYS 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78512 2d44:A (2.3) BS02 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78513 2d44:A (2.3) BS03 XYS 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78514 2d44:A (2.3) BS04 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    78515 2d45:A (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    78516 2d45:A (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    78517 2d45:B (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    78518 2d45:B (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    78519 2d45:C (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    78520 2d45:D (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    78521 2d45:D (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    78522 2d4c:A (2.4) BS01 CA 2.3.1.- GO:0005737 ... Q99962 16763557
    78523 2d4e:C (2.1) BS01 NAD 1.2.1.60 GO:0016491 ... Q5SJP9 N/A
    78524 2d4e:D (2.1) BS01 NAD 1.2.1.60 GO:0016491 ... Q5SJP9 N/A
    78525 2d4h:A (2.9) BS01 5GP 3.6.1.-
    3.6.5.-
    GO:0003924 ... P32455 16511497
    78526 2d4h:B (2.9) BS01 5GP 3.6.1.-
    3.6.5.-
    GO:0003924 ... P32455 16511497
    78527 2d4i:A (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    78528 2d4i:A (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    78529 2d4i:B (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    78530 2d4i:B (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    78531 2d4i:B (1.16) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    78532 2d4i:B (1.16) BS04 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    78533 2d4k:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    78534 2d4k:A (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    78535 2d4k:N (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    78536 2d4k:N (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    78537 2d4k:N (1.15) BS03 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    78538 2d4n:A (1.53) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 17169987 MOAD: Kd=1.2uM
    78539 2d4q:A (2.3) BS01 OXN ? N/A P21359 16397625
    78540 2d4q:B (2.3) BS01 OXN ? N/A P21359 16397625
    78541 2d4q:B (2.3) BS02 POP ? N/A P21359 16397625
    78542 2d4q:B (2.3) BS03 POP ? N/A P21359 16397625
    78543 2d4v:A (1.9) BS01 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78544 2d4v:A (1.9) BS02 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78545 2d4v:A (1.9) BS03 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78546 2d4v:A (1.9) BS04 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78547 2d4v:B (1.9) BS01 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78548 2d4v:B (1.9) BS02 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78549 2d4v:B (1.9) BS03 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78550 2d4v:C (1.9) BS01 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78551 2d4v:C (1.9) BS02 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78552 2d4v:C (1.9) BS03 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78553 2d4v:D (1.9) BS01 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78554 2d4v:D (1.9) BS02 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78555 2d4v:D (1.9) BS03 FLC 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78556 2d4v:D (1.9) BS04 NAD 1.1.1.42 GO:0000287 ... Q8GAX0 17634983
    78557 2d52:A (1.6) BS01 COA 2.3.1.216 GO:0009058 ... Q58VP7 17462571
    78558 2d52:B (1.6) BS01 COA 2.3.1.216 GO:0009058 ... Q58VP7 17462571
    78559 2d54:A (2.0) BS01 ZN 6.1.1.10 GO:0000166 ... P23395 N/A
    78560 2d5a:A (1.7) BS01 COA ? N/A O58836 17342453
    78561 2d5b:A (1.8) BS01 ZN 6.1.1.10 GO:0000166 ... P23395 N/A
    78562 2d5c:A (1.65) BS01 SKM 1.1.1.25 GO:0004764 ... Q5SJF8 17825835
    78563 2d5c:B (1.65) BS01 SKM 1.1.1.25 GO:0004764 ... Q5SJF8 17825835
    78564 2d5f:A (1.9) BS01 CO3 ? GO:0045735 ... P04347 20215054
    78565 2d5f:A (1.9) BS02 MG ? GO:0045735 ... P04347 20215054
    78566 2d5f:B (1.9) BS01 CO3 ? GO:0045735 ... P04347 20215054
    78567 2d5f:B (1.9) BS02 MG ? GO:0045735 ... P04347 20215054
    78568 2d5h:A (2.8) BS01 CO3 ? GO:0045735 ... P04347 20215054
    78569 2d5h:A (2.8) BS02 MG ? GO:0045735 ... P04347 20215054
    78570 2d5h:C (2.8) BS01 MG ? GO:0045735 ... P04347 20215054
    78571 2d5h:D (2.8) BS01 CO3 ? GO:0045735 ... P04347 20215054
    78572 2d5h:D (2.8) BS02 MG ? GO:0045735 ... P04347 20215054
    78573 2d5h:E (2.8) BS01 MG ? GO:0045735 ... P04347 20215054
    78574 2d5h:F (2.8) BS01 MG ? GO:0045735 ... P04347 20215054
    78575 2d5i:A (2.2) BS01 FMN 1.6.5.-
    1.7.1.17
    GO:0005829 ... P41407 16684776
    78576 2d5m:A (1.05) BS01 ZN ? GO:0010181 ... Q4W5X6 N/A
    78577 2d5m:A (1.05) BS02 FMN ? GO:0010181 ... Q4W5X6 N/A
    78578 2d5n:A (2.97) BS01 ZN 1.1.1.193
    3.5.4.26
    GO:0008270 ... P17618 N/A
    78579 2d5n:B (2.97) BS01 ZN 1.1.1.193
    3.5.4.26
    GO:0008270 ... P17618 N/A
    78580 2d5n:B (2.97) BS02 NDP 1.1.1.193
    3.5.4.26
    GO:0008270 ... P17618 N/A
    78581 2d5n:C (2.97) BS01 ZN 1.1.1.193
    3.5.4.26
    GO:0008270 ... P17618 N/A
    78582 2d5n:D (2.97) BS01 ZN 1.1.1.193
    3.5.4.26
    GO:0008270 ... P17618 N/A
    78583 2d5v:A (2.0) BS01 dna ? GO:0003677 ... P70512 17223534
    78584 2d5v:A (2.0) BS02 dna ? GO:0003677 ... P70512 17223534
    78585 2d5v:B (2.0) BS01 dna ? GO:0003677 ... P70512 17223534
    78586 2d5v:B (2.0) BS02 dna ? GO:0003677 ... P70512 17223534
    78587 2d5w:A (1.3) BS01 peptide ? GO:0015833 ... Q5SHU6 N/A
    78588 2d5w:B (1.3) BS01 peptide ? GO:0015833 ... Q5SHU6 N/A
    78589 2d5x:A (1.45) BS01 HEM ? GO:0005344 ... P01958 16403522
    78590 2d5x:A (1.45) BS02 L35 ? GO:0005344 ... P01958 16403522
    78591 2d5x:A (1.45) BS03 L35 ? GO:0005344 ... P01958 16403522
    78592 2d5x:B (1.45) BS01 HEM ? GO:0005344 ... P02062 16403522
    78593 2d5x:B (1.45) BS02 L35 ? GO:0005344 ... P02062 16403522
    78594 2d5y:A (1.98) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    78595 2d5y:A (1.98) BS02 IVA 2.6.1.1 GO:0003824 ... P00509 N/A
    78596 2d5z:A (1.45) BS01 HEM ? GO:0004601 ... P69905 16403522
    78597 2d5z:A (1.45) BS02 L35 ? GO:0004601 ... P69905 16403522
    78598 2d5z:A (1.45) BS03 L35 ? GO:0004601 ... P69905 16403522
    78599 2d5z:B (1.45) BS01 HEM ? GO:0004601 ... P68871 16403522
    78600 2d5z:B (1.45) BS02 L35 ? GO:0004601 ... P68871 16403522

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).