SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785801 8cvj:1Q (2.4) BS02 rna ? GO:0000049 ... P60489 36316410
    785802 8cvj:1Q (2.4) BS03 rna ? GO:0000049 ... P60489 36316410
    785803 8cvj:1Q (2.4) BS04 rna ? GO:0000049 ... P60489 36316410
    785804 8cvj:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    785805 8cvj:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    785806 8cvj:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 36316410
    785807 8cvj:1Q (2.4) BS08 MG ? GO:0000049 ... P60489 36316410
    785808 8cvj:1R (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 36316410
    785809 8cvj:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    785810 8cvj:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    785811 8cvj:1S (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 36316410
    785812 8cvj:1S (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 36316410
    785813 8cvj:1S (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    785814 8cvj:1S (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    785815 8cvj:1T (2.4) BS01 rna ? GO:0003735 ... P60490 36316410
    785816 8cvj:1T (2.4) BS02 rna ? GO:0003735 ... P60490 36316410
    785817 8cvj:1U (2.4) BS01 rna ? GO:0000027 ... P60491 36316410
    785818 8cvj:1U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    785819 8cvj:1U (2.4) BS03 MG ? GO:0000027 ... P60491 36316410
    785820 8cvj:1U (2.4) BS04 MG ? GO:0000027 ... P60491 36316410
    785821 8cvj:1U (2.4) BS05 MG ? GO:0000027 ... P60491 36316410
    785822 8cvj:1U (2.4) BS06 MG ? GO:0000027 ... P60491 36316410
    785823 8cvj:1U (2.4) BS07 MG ? GO:0000027 ... P60491 36316410
    785824 8cvj:1U (2.4) BS08 MG ? GO:0000027 ... P60491 36316410
    785825 8cvj:1U (2.4) BS09 MG ? GO:0000027 ... P60491 36316410
    785826 8cvj:1V (2.4) BS01 rna ? GO:0003723 ... P60492 36316410
    785827 8cvj:1V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    785828 8cvj:1V (2.4) BS03 MG ? GO:0003723 ... P60492 36316410
    785829 8cvj:1V (2.4) BS04 MG ? GO:0003723 ... P60492 36316410
    785830 8cvj:1V (2.4) BS05 MG ? GO:0003723 ... P60492 36316410
    785831 8cvj:1V (2.4) BS06 MG ? GO:0003723 ... P60492 36316410
    785832 8cvj:1V (2.4) BS07 MG ? GO:0003723 ... P60492 36316410
    785833 8cvj:1W (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 36316410
    785834 8cvj:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    785835 8cvj:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    785836 8cvj:1W (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    785837 8cvj:1X (2.4) BS01 rna ? GO:0003735 ... Q5SHP0 36316410
    785838 8cvj:1X (2.4) BS02 MG ? GO:0003735 ... Q5SHP0 36316410
    785839 8cvj:1X (2.4) BS03 MG ? GO:0003735 ... Q5SHP0 36316410
    785840 8cvj:1X (2.4) BS04 MG ? GO:0003735 ... Q5SHP0 36316410
    785841 8cvj:1Y (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 36316410
    785842 8cvj:1Y (2.4) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    785843 8cvj:1Y (2.4) BS03 ZN ? GO:0003723 ... Q5SHP9 36316410
    785844 8cvj:1Z (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 36316410
    785845 8cvj:1Z (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 36316410
    785846 8cvj:1Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    785847 8cvj:1b (2.4) BS01 rna ? GO:0003735 ... P80371 36316410
    785848 8cvj:1c (2.4) BS01 rna ? GO:0003676 ... P80372 36316410
    785849 8cvj:1d (2.4) BS01 rna ? GO:0003723 ... P80373 36316410
    785850 8cvj:1d (2.4) BS02 SF4 ? GO:0003723 ... P80373 36316410
    785851 8cvj:1e (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 36316410
    785852 8cvj:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    785853 8cvj:1e (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    785854 8cvj:1f (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 36316410
    785855 8cvj:1f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    785856 8cvj:1g (2.4) BS01 rna ? GO:0000049 ... P17291 36316410
    785857 8cvj:1g (2.4) BS02 rna ? GO:0000049 ... P17291 36316410
    785858 8cvj:1h (2.4) BS01 rna ? GO:0003735 ... P0DOY9 36316410
    785859 8cvj:1i (2.4) BS01 rna ? GO:0000049 ... P80374 36316410
    785860 8cvj:1i (2.4) BS02 rna ? GO:0000049 ... P80374 36316410
    785861 8cvj:1j (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 36316410
    785862 8cvj:1k (2.4) BS01 rna ? GO:0003735 ... P80376 36316410
    785863 8cvj:1k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    785864 8cvj:1l (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 36316410
    785865 8cvj:1l (2.4) BS02 rna ? GO:0000049 ... Q5SHN3 36316410
    785866 8cvj:1l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    785867 8cvj:1m (2.4) BS01 rna ? GO:0000049 ... P80377 36316410
    785868 8cvj:1m (2.4) BS02 rna ? GO:0000049 ... P80377 36316410
    785869 8cvj:1m (2.4) BS03 rna ? GO:0000049 ... P80377 36316410
    785870 8cvj:1m (2.4) BS04 MG ? GO:0000049 ... P80377 36316410
    785871 8cvj:1n (2.4) BS01 rna ? GO:0003735 ... P0DOY6 36316410
    785872 8cvj:1n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    785873 8cvj:1o (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 36316410
    785874 8cvj:1o (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 36316410
    785875 8cvj:1p (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 36316410
    785876 8cvj:1q (2.4) BS01 rna ? GO:0003735 ... P0DOY7 36316410
    785877 8cvj:1r (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 36316410
    785878 8cvj:1s (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 36316410
    785879 8cvj:1t (2.4) BS01 rna ? GO:0003723 ... P80380 36316410
    785880 8cvj:20 (2.4) BS01 rna ? GO:0003735 ... P60493 36316410
    785881 8cvj:20 (2.4) BS02 rna ? GO:0003735 ... P60493 36316410
    785882 8cvj:20 (2.4) BS03 rna ? GO:0003735 ... P60493 36316410
    785883 8cvj:20 (2.4) BS04 MG ? GO:0003735 ... P60493 36316410
    785884 8cvj:21 (2.4) BS01 rna ? GO:0003735 ... P60494 36316410
    785885 8cvj:21 (2.4) BS02 rna ? GO:0003735 ... P60494 36316410
    785886 8cvj:21 (2.4) BS03 MG ? GO:0003735 ... P60494 36316410
    785887 8cvj:22 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 36316410
    785888 8cvj:23 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 36316410
    785889 8cvj:23 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 36316410
    785890 8cvj:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    785891 8cvj:24 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 36316410
    785892 8cvj:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    785893 8cvj:25 (2.4) BS01 rna ? GO:0003735 ... P80339 36316410
    785894 8cvj:25 (2.4) BS02 MG ? GO:0003735 ... P80339 36316410
    785895 8cvj:25 (2.4) BS03 MG ? GO:0003735 ... P80339 36316410
    785896 8cvj:25 (2.4) BS04 ZN ? GO:0003735 ... P80339 36316410
    785897 8cvj:26 (2.4) BS01 rna ? GO:0000049 ... P35871 36316410
    785898 8cvj:26 (2.4) BS02 MG ? GO:0000049 ... P35871 36316410
    785899 8cvj:26 (2.4) BS03 ZN ? GO:0000049 ... P35871 36316410
    785900 8cvj:27 (2.4) BS01 rna ? GO:0003735 ... P80340 36316410
    785901 8cvj:28 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 36316410
    785902 8cvj:28 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    785903 8cvj:29 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 36316410
    785904 8cvj:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    785905 8cvj:2D (2.4) BS01 rna ? GO:0002181 ... P60405 36316410
    785906 8cvj:2D (2.4) BS02 rna ? GO:0002181 ... P60405 36316410
    785907 8cvj:2D (2.4) BS03 MG ? GO:0002181 ... P60405 36316410
    785908 8cvj:2D (2.4) BS04 MG ? GO:0002181 ... P60405 36316410
    785909 8cvj:2D (2.4) BS05 MG ? GO:0002181 ... P60405 36316410
    785910 8cvj:2E (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 36316410
    785911 8cvj:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    785912 8cvj:2F (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 36316410
    785913 8cvj:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    785914 8cvj:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    785915 8cvj:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    785916 8cvj:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    785917 8cvj:2G (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 36316410
    785918 8cvj:2G (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 36316410
    785919 8cvj:2G (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 36316410
    785920 8cvj:2G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    785921 8cvj:2H (2.4) BS01 rna ? GO:0002181 ... P0DOY8 36316410
    785922 8cvj:2I (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 36316410
    785923 8cvj:2N (2.4) BS01 rna ? GO:0003729 ... P60488 36316410
    785924 8cvj:2O (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 36316410
    785925 8cvj:2O (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 36316410
    785926 8cvj:2O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    785927 8cvj:2P (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 36316410
    785928 8cvj:2Q (2.4) BS01 rna ? GO:0000049 ... P60489 36316410
    785929 8cvj:2Q (2.4) BS02 rna ? GO:0000049 ... P60489 36316410
    785930 8cvj:2Q (2.4) BS03 rna ? GO:0000049 ... P60489 36316410
    785931 8cvj:2Q (2.4) BS04 rna ? GO:0000049 ... P60489 36316410
    785932 8cvj:2Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    785933 8cvj:2Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    785934 8cvj:2R (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 36316410
    785935 8cvj:2S (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 36316410
    785936 8cvj:2S (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 36316410
    785937 8cvj:2T (2.4) BS01 rna ? GO:0003735 ... P60490 36316410
    785938 8cvj:2T (2.4) BS02 rna ? GO:0003735 ... P60490 36316410
    785939 8cvj:2U (2.4) BS01 rna ? GO:0000027 ... P60491 36316410
    785940 8cvj:2U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    785941 8cvj:2V (2.4) BS01 rna ? GO:0003723 ... P60492 36316410
    785942 8cvj:2V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    785943 8cvj:2W (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 36316410
    785944 8cvj:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    785945 8cvj:2W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    785946 8cvj:2X (2.4) BS01 rna ? GO:0003735 ... Q5SHP0 36316410
    785947 8cvj:2X (2.4) BS02 MG ? GO:0003735 ... Q5SHP0 36316410
    785948 8cvj:2Y (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 36316410
    785949 8cvj:2Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 36316410
    785950 8cvj:2Z (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 36316410
    785951 8cvj:2Z (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 36316410
    785952 8cvj:2Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    785953 8cvj:2b (2.4) BS01 rna ? GO:0003735 ... P80371 36316410
    785954 8cvj:2c (2.4) BS01 rna ? GO:0003676 ... P80372 36316410
    785955 8cvj:2d (2.4) BS01 rna ? GO:0003723 ... P80373 36316410
    785956 8cvj:2d (2.4) BS02 SF4 ? GO:0003723 ... P80373 36316410
    785957 8cvj:2e (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 36316410
    785958 8cvj:2e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    785959 8cvj:2f (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 36316410
    785960 8cvj:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    785961 8cvj:2g (2.4) BS01 rna ? GO:0000049 ... P17291 36316410
    785962 8cvj:2g (2.4) BS02 rna ? GO:0000049 ... P17291 36316410
    785963 8cvj:2g (2.4) BS03 MG ? GO:0000049 ... P17291 36316410
    785964 8cvj:2h (2.4) BS01 rna ? GO:0003735 ... P0DOY9 36316410
    785965 8cvj:2i (2.4) BS01 rna ? GO:0000049 ... P80374 36316410
    785966 8cvj:2i (2.4) BS02 rna ? GO:0000049 ... P80374 36316410
    785967 8cvj:2j (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 36316410
    785968 8cvj:2k (2.4) BS01 rna ? GO:0003735 ... P80376 36316410
    785969 8cvj:2k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    785970 8cvj:2l (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 36316410
    785971 8cvj:2l (2.4) BS02 rna ? GO:0000049 ... Q5SHN3 36316410
    785972 8cvj:2l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    785973 8cvj:2l (2.4) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    785974 8cvj:2m (2.4) BS01 rna ? GO:0000049 ... P80377 36316410
    785975 8cvj:2n (2.4) BS01 rna ? GO:0003735 ... P0DOY6 36316410
    785976 8cvj:2n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    785977 8cvj:2o (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 36316410
    785978 8cvj:2o (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 36316410
    785979 8cvj:2p (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 36316410
    785980 8cvj:2q (2.4) BS01 rna ? GO:0003735 ... P0DOY7 36316410
    785981 8cvj:2q (2.4) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    785982 8cvj:2q (2.4) BS03 MG ? GO:0003735 ... P0DOY7 36316410
    785983 8cvj:2r (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 36316410
    785984 8cvj:2r (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 36316410
    785985 8cvj:2s (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 36316410
    785986 8cvj:2t (2.4) BS01 rna ? GO:0003723 ... P80380 36316410
    785987 8cvj:2t (2.4) BS02 MG ? GO:0003723 ... P80380 36316410
    785988 8cvk:10 (2.5) BS01 rna ? GO:0003735 ... P60493 36316410
    785989 8cvk:10 (2.5) BS02 rna ? GO:0003735 ... P60493 36316410
    785990 8cvk:10 (2.5) BS03 rna ? GO:0003735 ... P60493 36316410
    785991 8cvk:10 (2.5) BS04 MG ? GO:0003735 ... P60493 36316410
    785992 8cvk:10 (2.5) BS05 MG ? GO:0003735 ... P60493 36316410
    785993 8cvk:11 (2.5) BS01 rna ? GO:0003735 ... P60494 36316410
    785994 8cvk:11 (2.5) BS02 rna ? GO:0003735 ... P60494 36316410
    785995 8cvk:11 (2.5) BS03 MG ? GO:0003735 ... P60494 36316410
    785996 8cvk:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 36316410
    785997 8cvk:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    785998 8cvk:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 36316410
    785999 8cvk:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 36316410
    786000 8cvk:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).