SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    787401 8d2w:A (3.4) BS01 ZGS ? GO:0005783 ... Q6DEJ6 37156797
    787402 8d2x:A (3.4) BS01 ZGS ? GO:0005783 ... Q6DEJ6 37156797
    787403 8d2y:A (1.22) BS01 EPE 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    787404 8d2z:A (1.85) BS01 ZN 3.5.2.6 GO:0046872 ... B4EIY5 N/A
    787405 8d2z:B (1.85) BS01 ZN 3.5.2.6 GO:0046872 ... B4EIY5 N/A
    787406 8d32:A (1.85) BS01 SF0 2.5.1.17 GO:0005524 ... P9WP99 39012171
    787407 8d32:A (1.85) BS02 3PO 2.5.1.17 GO:0005524 ... P9WP99 39012171
    787408 8d33:A (2.46) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787409 8d33:A (2.46) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787410 8d33:A (2.46) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787411 8d33:A (2.46) BS04 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787412 8d35:A () BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A N/A N/A
    787413 8d36:H (1.45) BS01 peptide N/A N/A N/A 35857439
    787414 8d36:L (1.45) BS01 peptide N/A N/A N/A 35857439
    787415 8d37:A (2.65) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787416 8d37:A (2.65) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787417 8d37:A (2.65) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787418 8d37:A (2.65) BS04 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787419 8d39:A (1.268) BS01 QDB ? GO:0004497 ... Q2IU02 36043399
    787420 8d39:A (1.268) BS02 HEM ? GO:0004497 ... Q2IU02 36043399
    787421 8d3a:H (2.9) BS01 BMA N/A N/A N/A 36225920
    787422 8d3a:H (2.9) BS02 MAN N/A N/A N/A 36225920
    787423 8d3a:H (2.9) BS03 MAN N/A N/A N/A 36225920
    787424 8d3c:A (3.1) BS01 CA ? N/A P04275 35776905
    787425 8d3c:A (3.1) BS02 CA ? N/A P04275 35776905
    787426 8d3c:A (3.1) BS03 CA ? N/A P04275 35776905
    787427 8d3c:B (3.1) BS01 CA ? N/A P04275 35776905
    787428 8d3c:B (3.1) BS02 CA ? N/A P04275 35776905
    787429 8d3c:B (3.1) BS03 CA ? N/A P04275 35776905
    787430 8d3c:C (3.1) BS01 CA ? N/A P04275 35776905
    787431 8d3c:C (3.1) BS02 CA ? N/A P04275 35776905
    787432 8d3c:C (3.1) BS03 CA ? N/A P04275 35776905
    787433 8d3c:D (3.1) BS01 CA ? N/A P04275 35776905
    787434 8d3c:D (3.1) BS02 CA ? N/A P04275 35776905
    787435 8d3c:D (3.1) BS03 CA ? N/A P04275 35776905
    787436 8d3c:E (3.1) BS01 CA ? N/A P04275 35776905
    787437 8d3c:E (3.1) BS02 CA ? N/A P04275 35776905
    787438 8d3c:E (3.1) BS03 CA ? N/A P04275 35776905
    787439 8d3c:F (3.1) BS01 CA ? N/A P04275 35776905
    787440 8d3c:F (3.1) BS02 CA ? N/A P04275 35776905
    787441 8d3c:F (3.1) BS03 CA ? N/A P04275 35776905
    787442 8d3c:G (3.1) BS01 CA ? N/A P04275 35776905
    787443 8d3c:G (3.1) BS02 CA ? N/A P04275 35776905
    787444 8d3c:G (3.1) BS03 CA ? N/A P04275 35776905
    787445 8d3c:H (3.1) BS01 CA ? N/A P04275 35776905
    787446 8d3c:H (3.1) BS02 CA ? N/A P04275 35776905
    787447 8d3c:H (3.1) BS03 CA ? N/A P04275 35776905
    787448 8d3c:I (3.1) BS01 CA ? N/A P04275 35776905
    787449 8d3c:I (3.1) BS02 CA ? N/A P04275 35776905
    787450 8d3c:I (3.1) BS03 CA ? N/A P04275 35776905
    787451 8d3c:J (3.1) BS01 CA ? N/A P04275 35776905
    787452 8d3c:J (3.1) BS02 CA ? N/A P04275 35776905
    787453 8d3c:J (3.1) BS03 CA ? N/A P04275 35776905
    787454 8d3c:K (3.1) BS01 CA ? N/A P04275 35776905
    787455 8d3c:K (3.1) BS02 CA ? N/A P04275 35776905
    787456 8d3c:K (3.1) BS03 CA ? N/A P04275 35776905
    787457 8d3c:L (3.1) BS01 CA ? N/A P04275 35776905
    787458 8d3c:L (3.1) BS02 CA ? N/A P04275 35776905
    787459 8d3c:L (3.1) BS03 CA ? N/A P04275 35776905
    787460 8d3c:M (3.1) BS01 CA ? N/A P04275 35776905
    787461 8d3c:M (3.1) BS02 CA ? N/A P04275 35776905
    787462 8d3c:M (3.1) BS03 CA ? N/A P04275 35776905
    787463 8d3c:N (3.1) BS01 CA ? N/A P04275 35776905
    787464 8d3c:N (3.1) BS02 CA ? N/A P04275 35776905
    787465 8d3c:N (3.1) BS03 CA ? N/A P04275 35776905
    787466 8d3c:O (3.1) BS01 CA ? N/A P04275 35776905
    787467 8d3c:O (3.1) BS02 CA ? N/A P04275 35776905
    787468 8d3c:O (3.1) BS03 CA ? N/A P04275 35776905
    787469 8d3c:P (3.1) BS01 CA ? N/A P04275 35776905
    787470 8d3c:P (3.1) BS02 CA ? N/A P04275 35776905
    787471 8d3c:P (3.1) BS03 CA ? N/A P04275 35776905
    787472 8d3d:A (3.2) BS01 CA ? N/A P04275 35776905
    787473 8d3d:A (3.2) BS02 CA ? N/A P04275 35776905
    787474 8d3d:A (3.2) BS03 CA ? N/A P04275 35776905
    787475 8d3d:B (3.2) BS01 CA ? N/A P04275 35776905
    787476 8d3d:B (3.2) BS02 CA ? N/A P04275 35776905
    787477 8d3d:B (3.2) BS03 CA ? N/A P04275 35776905
    787478 8d3d:C (3.2) BS01 CA ? N/A P04275 35776905
    787479 8d3d:C (3.2) BS02 CA ? N/A P04275 35776905
    787480 8d3d:C (3.2) BS03 CA ? N/A P04275 35776905
    787481 8d3d:D (3.2) BS01 CA ? N/A P04275 35776905
    787482 8d3d:D (3.2) BS02 CA ? N/A P04275 35776905
    787483 8d3d:D (3.2) BS03 CA ? N/A P04275 35776905
    787484 8d3d:E (3.2) BS01 CA ? N/A P04275 35776905
    787485 8d3d:E (3.2) BS02 CA ? N/A P04275 35776905
    787486 8d3d:E (3.2) BS03 CA ? N/A P04275 35776905
    787487 8d3d:F (3.2) BS01 CA ? N/A P04275 35776905
    787488 8d3d:F (3.2) BS02 CA ? N/A P04275 35776905
    787489 8d3d:F (3.2) BS03 CA ? N/A P04275 35776905
    787490 8d3d:G (3.2) BS01 CA ? N/A P04275 35776905
    787491 8d3d:G (3.2) BS02 CA ? N/A P04275 35776905
    787492 8d3d:G (3.2) BS03 CA ? N/A P04275 35776905
    787493 8d3d:H (3.2) BS01 CA ? N/A P04275 35776905
    787494 8d3d:H (3.2) BS02 CA ? N/A P04275 35776905
    787495 8d3d:H (3.2) BS03 CA ? N/A P04275 35776905
    787496 8d3d:I (3.2) BS01 CA ? N/A P04275 35776905
    787497 8d3d:I (3.2) BS02 CA ? N/A P04275 35776905
    787498 8d3d:I (3.2) BS03 CA ? N/A P04275 35776905
    787499 8d3d:J (3.2) BS01 CA ? N/A P04275 35776905
    787500 8d3d:J (3.2) BS02 CA ? N/A P04275 35776905
    787501 8d3d:J (3.2) BS03 CA ? N/A P04275 35776905
    787502 8d3d:K (3.2) BS01 CA ? N/A P04275 35776905
    787503 8d3d:K (3.2) BS02 CA ? N/A P04275 35776905
    787504 8d3d:K (3.2) BS03 CA ? N/A P04275 35776905
    787505 8d3d:L (3.2) BS01 CA ? N/A P04275 35776905
    787506 8d3d:L (3.2) BS02 CA ? N/A P04275 35776905
    787507 8d3d:L (3.2) BS03 CA ? N/A P04275 35776905
    787508 8d3d:M (3.2) BS01 CA ? N/A P04275 35776905
    787509 8d3d:M (3.2) BS02 CA ? N/A P04275 35776905
    787510 8d3d:M (3.2) BS03 CA ? N/A P04275 35776905
    787511 8d3d:N (3.2) BS01 CA ? N/A P04275 35776905
    787512 8d3d:N (3.2) BS02 CA ? N/A P04275 35776905
    787513 8d3d:N (3.2) BS03 CA ? N/A P04275 35776905
    787514 8d3d:O (3.2) BS01 CA ? N/A P04275 35776905
    787515 8d3d:O (3.2) BS02 CA ? N/A P04275 35776905
    787516 8d3d:O (3.2) BS03 CA ? N/A P04275 35776905
    787517 8d3d:P (3.2) BS01 CA ? N/A P04275 35776905
    787518 8d3d:P (3.2) BS02 CA ? N/A P04275 35776905
    787519 8d3d:P (3.2) BS03 CA ? N/A P04275 35776905
    787520 8d3e:A (2.38) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787521 8d3e:A (2.38) BS02 QDI 1.6.99.- GO:0016491 ... O95831 38671223
    787522 8d3e:B (2.38) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787523 8d3g:A (2.58) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787524 8d3g:A (2.58) BS02 QD1 1.6.99.- GO:0016491 ... O95831 38671223
    787525 8d3g:B (2.58) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787526 8d3g:B (2.58) BS02 QD1 1.6.99.- GO:0016491 ... O95831 38671223
    787527 8d3h:A (2.51) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787528 8d3h:A (2.51) BS02 QBC 1.6.99.- GO:0016491 ... O95831 38671223
    787529 8d3h:B (2.51) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787530 8d3h:B (2.51) BS02 QBC 1.6.99.- GO:0016491 ... O95831 38671223
    787531 8d3i:A (2.65) BS01 1LM 1.6.99.- GO:0016491 ... O95831 38671223
    787532 8d3i:A (2.65) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787533 8d3i:B (2.65) BS01 1LM 1.6.99.- GO:0016491 ... O95831 38671223
    787534 8d3i:B (2.65) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787535 8d3j:A (2.4) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787536 8d3j:A (2.4) BS02 QEF 1.6.99.- GO:0016491 ... O95831 38671223
    787537 8d3j:B (2.4) BS01 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787538 8d3j:B (2.4) BS02 QEF 1.6.99.- GO:0016491 ... O95831 38671223
    787539 8d3k:A (2.3) BS01 QC6 1.6.99.- GO:0016491 ... O95831 38671223
    787540 8d3k:A (2.3) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787541 8d3k:B (2.3) BS01 QC6 1.6.99.- GO:0016491 ... O95831 38671223
    787542 8d3k:B (2.3) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787543 8d3l:A (3.49) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787544 8d3l:A (3.49) BS02 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787545 8d3l:B (3.49) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787546 8d3l:C (3.49) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787547 8d3l:D (3.49) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787548 8d3l:E (3.49) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787549 8d3l:F (3.49) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787550 8d3l:I (3.49) BS01 dna 3.1.12.1 N/A N/A 36272411
    787551 8d3l:I (3.49) BS02 SF4 3.1.12.1 N/A N/A 36272411
    787552 8d3l:I (3.49) BS03 MN 3.1.12.1 N/A N/A 36272411
    787553 8d3l:J (3.49) BS01 dna 3.1.12.1 N/A N/A 36272411
    787554 8d3l:J (3.49) BS02 SF4 3.1.12.1 N/A N/A 36272411
    787555 8d3l:J (3.49) BS03 MN 3.1.12.1 N/A N/A 36272411
    787556 8d3m:A (3.41) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787557 8d3m:A (3.41) BS02 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787558 8d3m:B (3.41) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787559 8d3m:C (3.41) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787560 8d3m:C (3.41) BS02 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787561 8d3m:E (3.41) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787562 8d3m:F (3.41) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787563 8d3m:I (3.41) BS01 dna 3.1.12.1 N/A N/A 36272411
    787564 8d3m:I (3.41) BS02 MN 3.1.12.1 N/A N/A 36272411
    787565 8d3m:I (3.41) BS03 SF4 3.1.12.1 N/A N/A 36272411
    787566 8d3n:A (2.25) BS01 QBC 1.6.99.- GO:0016491 ... O95831 38671223
    787567 8d3n:A (2.25) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787568 8d3n:B (2.25) BS01 QBC 1.6.99.- GO:0016491 ... O95831 38671223
    787569 8d3n:B (2.25) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787570 8d3o:A (2.25) BS01 QF6 1.6.99.- GO:0016491 ... O95831 38671223
    787571 8d3o:A (2.25) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787572 8d3o:B (2.25) BS01 QF6 1.6.99.- GO:0016491 ... O95831 38671223
    787573 8d3o:B (2.25) BS02 FAD 1.6.99.- GO:0016491 ... O95831 38671223
    787574 8d3p:A (4.26) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787575 8d3p:B (4.26) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787576 8d3p:C (4.26) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787577 8d3p:C (4.26) BS02 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787578 8d3p:C (4.26) BS03 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787579 8d3p:D (4.26) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787580 8d3p:D (4.26) BS02 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787581 8d3p:E (4.26) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787582 8d3p:F (4.26) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787583 8d3p:I (4.26) BS01 dna 3.1.12.1 N/A N/A 36272411
    787584 8d3p:I (4.26) BS02 dna 3.1.12.1 N/A N/A 36272411
    787585 8d3p:I (4.26) BS03 SF4 3.1.12.1 N/A N/A 36272411
    787586 8d3p:I (4.26) BS04 MN 3.1.12.1 N/A N/A 36272411
    787587 8d3q:A (3.9) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787588 8d3q:B (3.9) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787589 8d3q:C (3.9) BS01 dna 3.1.-.- GO:0003676 ... Q9KFX9 36272411
    787590 8d3q:E (3.9) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787591 8d3q:F (3.9) BS01 dna 3.1.-.- GO:0000287 ... Q9KFX8 36272411
    787592 8d3q:I (3.9) BS01 dna 3.1.12.1 N/A N/A 36272411
    787593 8d3q:I (3.9) BS02 SF4 3.1.12.1 N/A N/A 36272411
    787594 8d3q:I (3.9) BS03 MN 3.1.12.1 N/A N/A 36272411
    787595 8d3q:J (3.9) BS01 dna 3.1.12.1 N/A N/A 36272411
    787596 8d3q:J (3.9) BS02 SF4 3.1.12.1 N/A N/A 36272411
    787597 8d3r:A (3.04) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787598 8d3r:A (3.04) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787599 8d3r:A (3.04) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    787600 8d3r:A (3.04) BS04 CA 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).