SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    78601 2d5z:C (1.45) BS01 L35 ? GO:0004601 ... P69905 16403522
    78602 2d5z:C (1.45) BS02 HEM ? GO:0004601 ... P69905 16403522
    78603 2d5z:C (1.45) BS03 L35 ? GO:0004601 ... P69905 16403522
    78604 2d5z:D (1.45) BS01 L35 ? GO:0004601 ... P68871 16403522
    78605 2d5z:D (1.45) BS02 HEM ? GO:0004601 ... P68871 16403522
    78606 2d5z:D (1.45) BS03 L35 ? GO:0004601 ... P68871 16403522
    78607 2d60:A (1.7) BS01 HEM ? GO:0004601 ... P69905 16403522
    78608 2d60:A (1.7) BS02 L35 ? GO:0004601 ... P69905 16403522
    78609 2d60:A (1.7) BS03 L35 ? GO:0004601 ... P69905 16403522
    78610 2d60:B (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    78611 2d60:B (1.7) BS02 L35 ? GO:0004601 ... P68871 16403522
    78612 2d60:C (1.7) BS01 L35 ? GO:0004601 ... P69905 16403522
    78613 2d60:C (1.7) BS02 HEM ? GO:0004601 ... P69905 16403522
    78614 2d60:C (1.7) BS03 L35 ? GO:0004601 ... P69905 16403522
    78615 2d60:D (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    78616 2d60:D (1.7) BS02 L35 ? GO:0004601 ... P68871 16403522
    78617 2d61:A (2.01) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    78618 2d62:A (2.1) BS01 POP ? GO:0005524 ... O57933 N/A
    78619 2d63:A (2.05) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    78620 2d63:A (2.05) BS02 IVA 2.6.1.1 GO:0003824 ... P00509 N/A
    78621 2d64:A (2.05) BS01 PLP 2.6.1.- GO:0003824 ... P00509 N/A
    78622 2d64:A (2.05) BS02 IVA 2.6.1.- GO:0003824 ... P00509 N/A
    78623 2d65:A (2.3) BS01 PLP 2.6.1.- GO:0003824 ... P00509 N/A
    78624 2d66:A (2.18) BS01 PLP 2.6.1.- GO:0003824 ... P00509 N/A
    78625 2d6b:A (1.25) BS01 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78626 2d6b:A (1.25) BS02 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78627 2d6b:A (1.25) BS03 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78628 2d6b:A (1.25) BS04 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78629 2d6b:A (1.25) BS05 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78630 2d6b:A (1.25) BS06 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78631 2d6b:A (1.25) BS07 202 3.2.1.17 GO:0003796 ... P00698 16929100
    78632 2d6c:A (2.26) BS01 HME 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17173408
    78633 2d6c:A (2.26) BS02 IMD 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17173408
    78634 2d6c:B (2.26) BS01 HME 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17173408
    78635 2d6c:B (2.26) BS02 IMD 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17173408
    78636 2d6f:C (3.15) BS01 rna 6.3.5.- GO:0003824 ... O26803 16809540
    78637 2d6f:C (3.15) BS02 ZN 6.3.5.- GO:0003824 ... O26803 16809540
    78638 2d6f:D (3.15) BS01 rna 6.3.5.- GO:0003824 ... O26803 16809540
    78639 2d6f:D (3.15) BS02 ZN 6.3.5.- GO:0003824 ... O26803 16809540
    78640 2d6m:A (1.6) BS01 GLC ? GO:0030246 ... O08573 16990264
    78641 2d6m:A (1.6) BS02 GAL ? GO:0030246 ... O08573 16990264
    78642 2d6m:B (1.6) BS01 GLC ? GO:0030246 ... O08573 16990264
    78643 2d6m:B (1.6) BS02 GAL ? GO:0030246 ... O08573 16990264
    78644 2d6n:A (2.0) BS01 GAL ? GO:0030246 ... O08573 16990264
    78645 2d6n:B (2.0) BS01 GAL ? GO:0030246 ... O08573 16990264
    78646 2d6o:X (1.78) BS01 GAL ? GO:0030246 ... O08573 16990264
    78647 2d6p:A (2.7) BS01 GAL ? GO:0030246 ... O08573 16990264
    78648 2d6p:B (2.7) BS01 GAL ? GO:0030246 ... O08573 16990264
    78649 2d73:A (1.6) BS01 CA 3.2.1.3 GO:0004339 ... G8JZS4 18981178
    78650 2d73:B (1.6) BS01 CA 3.2.1.3 GO:0004339 ... G8JZS4 18981178
    78651 2d74:A (2.8) BS01 ZN 3.6.5.3 GO:0000049 ... Q8U082 16924118
    78652 2d74:B (2.8) BS01 ZN ? GO:0003743 ... Q8U3I5 16924118
    78653 2d7c:A (1.75) BS01 MG 3.6.5.2 GO:0003924 ... P62491 17030804
    78654 2d7c:A (1.75) BS02 GTP 3.6.5.2 GO:0003924 ... P62491 17030804
    78655 2d7c:B (1.75) BS01 MG 3.6.5.2 GO:0003924 ... P62491 17030804
    78656 2d7c:B (1.75) BS02 GTP 3.6.5.2 GO:0003924 ... P62491 17030804
    78657 2d7d:A (2.1) BS01 dna 3.1.-.- GO:0000715 ... P37954 16426634
    78658 2d7d:A (2.1) BS02 ADP 3.1.-.- GO:0000715 ... P37954 16426634
    78659 2d7f:A (2.31) BS01 MMA ? GO:0030246 ... P14894 17683532
    78660 2d7f:A (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    78661 2d7f:A (2.31) BS03 CA ? GO:0030246 ... P14894 17683532
    78662 2d7f:A (2.31) BS04 DBB ? GO:0030246 ... P14894 17683532
    78663 2d7f:F (2.31) BS01 MMA ? GO:0030246 ... P14894 17683532
    78664 2d7f:F (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    78665 2d7f:F (2.31) BS03 CA ? GO:0030246 ... P14894 17683532
    78666 2d7f:F (2.31) BS04 DBB ? GO:0030246 ... P14894 17683532
    78667 2d7f:L (2.31) BS01 MMA ? GO:0030246 ... P14894 17683532
    78668 2d7f:L (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    78669 2d7f:L (2.31) BS03 CA ? GO:0030246 ... P14894 17683532
    78670 2d7f:L (2.31) BS04 DBB ? GO:0030246 ... P14894 17683532
    78671 2d7f:S (2.31) BS01 MMA ? GO:0030246 ... P14894 17683532
    78672 2d7f:S (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    78673 2d7f:S (2.31) BS03 CA ? GO:0030246 ... P14894 17683532
    78674 2d7f:S (2.31) BS04 DBB ? GO:0030246 ... P14894 17683532
    78675 2d7g:A (3.3) BS01 dna 3.6.4.- GO:0003677 ... P17888 17464287
    78676 2d7g:B (3.3) BS01 dna 3.6.4.- GO:0003677 ... P17888 17464287
    78677 2d7g:C (3.3) BS01 dna 3.6.4.- GO:0003677 ... P17888 17464287
    78678 2d7g:D (3.3) BS01 dna 3.6.4.- GO:0003677 ... P17888 17464287
    78679 2d7h:A (3.0) BS01 dna 3.6.4.- GO:0003677 ... P17888 17464287
    78680 2d7i:A (2.5) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    78681 2d7i:A (2.5) BS02 UDP 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    78682 2d7r:A (2.8) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    78683 2d7r:A (2.8) BS02 UDP 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    78684 2d7s:A (3.0) BS01 peptide 3.4.22.46
    3.6.1.15
    GO:0003723 ... Q9QCE4 16456546
    78685 2d7y:A (2.66) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    78686 2d7z:A (2.65) BS01 PLP 2.6.1.- GO:0003824 ... P00509 N/A
    78687 2d81:A (1.66) BS01 RB3 3.1.1.75 GO:0005576 ... B2NHN2 16405909
    78688 2d82:A (-1.00) BS01 TTR 2.3.1.-
    2.3.1.48
    N/A Q92793 16426974 BindingDB: Kd=19600nM
    78689 2d8a:A (2.05) BS01 ZN 1.1.1.103 GO:0005737 ... O58389 N/A
    78690 2d8a:A (2.05) BS02 ZN 1.1.1.103 GO:0005737 ... O58389 N/A
    78691 2d8a:A (2.05) BS03 NAD 1.1.1.103 GO:0005737 ... O58389 N/A
    78692 2d8l:A (1.7) BS01 GCD 3.2.1.172 GO:0005737 ... O34559 16781735
    78693 2d8q:A (-1.00) BS01 ZN ? N/A O75800 N/A
    78694 2d8q:A (-1.00) BS02 ZN ? N/A O75800 N/A
    78695 2d8r:A (-1.00) BS01 ZN ? N/A Q9H0W7 N/A
    78696 2d8s:A (-1.00) BS01 ZN 2.3.2.27 GO:0008270 ... Q5T0T0 N/A
    78697 2d8s:A (-1.00) BS02 ZN 2.3.2.27 GO:0008270 ... Q5T0T0 N/A
    78698 2d8t:A (-1.00) BS01 ZN 2.3.2.27 GO:0016055 ... Q9NTX7 N/A
    78699 2d8t:A (-1.00) BS02 ZN 2.3.2.27 GO:0016055 ... Q9NTX7 N/A
    78700 2d8u:A (-1.00) BS01 ZN 2.3.2.27 GO:0008270 ... Q969Q1 N/A
    78701 2d8u:A (-1.00) BS02 ZN 2.3.2.27 GO:0008270 ... Q969Q1 N/A
    78702 2d8v:A (-1.00) BS01 ZN ? N/A Q9DAZ9 N/A
    78703 2d8v:A (-1.00) BS02 ZN ? N/A Q9DAZ9 N/A
    78704 2d8w:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16510975
    78705 2d8x:A (-1.00) BS01 ZN ? N/A P48059 N/A
    78706 2d8x:A (-1.00) BS02 ZN ? N/A P48059 N/A
    78707 2d8y:A (-1.00) BS01 ZN ? N/A Q9UHB6 N/A
    78708 2d8y:A (-1.00) BS02 ZN ? N/A Q9UHB6 N/A
    78709 2d8z:A (-1.00) BS01 ZN ? N/A Q14192 N/A
    78710 2d8z:A (-1.00) BS02 ZN ? N/A Q14192 N/A
    78711 2d9g:A (-1.00) BS01 ZN ? GO:0045893 ... Q8IY57 N/A
    78712 2d9h:A (-1.00) BS01 ZN ? N/A Q9BU19 N/A
    78713 2d9h:A (-1.00) BS02 ZN ? N/A Q9BU19 N/A
    78714 2d9k:A (-1.00) BS01 ZN ? N/A O14545 N/A
    78715 2d9k:A (-1.00) BS02 ZN ? N/A O14545 N/A
    78716 2d9l:A (-1.00) BS01 ZN ? GO:0005096 ... P52594 N/A
    78717 2d9m:A (-1.00) BS01 ZN ? GO:0035198 ... Q8IWR0 N/A
    78718 2d9n:A (-1.00) BS01 ZN ? GO:0003723 ... O95639 N/A
    78719 2d9n:A (-1.00) BS02 ZN ? GO:0003723 ... O95639 N/A
    78720 2daa:A (2.1) BS01 DCS 2.6.1.21 GO:0003824 ... P19938 N/A
    78721 2daa:A (2.1) BS02 DCS 2.6.1.21 GO:0003824 ... P19938 N/A
    78722 2daa:B (2.1) BS01 DCS 2.6.1.21 GO:0003824 ... P19938 N/A
    78723 2daa:B (2.1) BS02 DCS 2.6.1.21 GO:0003824 ... P19938 N/A
    78724 2dab:A (2.0) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 9749913
    78725 2dab:B (2.0) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 9749913
    78726 2dan:A (-1.00) BS01 ZN ? N/A O75800 N/A
    78727 2dan:A (-1.00) BS02 ZN ? N/A O75800 N/A
    78728 2dap:A (2.2) BS01 API 1.4.1.16 GO:0009089 ... P04964 9521647
    78729 2dar:A (-1.00) BS01 ZN ? N/A Q96HC4 N/A
    78730 2dar:A (-1.00) BS02 ZN ? N/A Q96HC4 N/A
    78731 2das:A (-1.00) BS01 ZN ? GO:0008270 ... Q9UJ78 N/A
    78732 2db3:A (2.2) BS01 rna 3.6.4.13 GO:0003676 ... P09052 16630817
    78733 2db3:A (2.2) BS02 ANP 3.6.4.13 GO:0003676 ... P09052 16630817
    78734 2db3:B (2.2) BS01 rna 3.6.4.13 GO:0003676 ... P09052 16630817
    78735 2db3:B (2.2) BS02 ANP 3.6.4.13 GO:0003676 ... P09052 16630817
    78736 2db3:C (2.2) BS01 rna 3.6.4.13 GO:0003676 ... P09052 16630817
    78737 2db3:C (2.2) BS02 ANP 3.6.4.13 GO:0003676 ... P09052 16630817
    78738 2db3:D (2.2) BS01 rna 3.6.4.13 GO:0003676 ... P09052 16630817
    78739 2db3:D (2.2) BS02 ANP 3.6.4.13 GO:0003676 ... P09052 16630817
    78740 2db4:A (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78741 2db4:B (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78742 2db4:C (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78743 2db4:D (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78744 2db4:E (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78745 2db4:F (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78746 2db4:G (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78747 2db4:H (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78748 2db4:I (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78749 2db4:J (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    78750 2db6:A (-1.00) BS01 ZN ? N/A Q96MF2 N/A
    78751 2db6:A (-1.00) BS02 ZN ? N/A Q96MF2 N/A
    78752 2dbl:H (2.9) BS01 S5H ? N/A P01868 8413674
    78753 2dbl:L (2.9) BS01 S5H N/A N/A N/A 8413674
    78754 2dbq:A (1.7) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78755 2dbr:A (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78756 2dbr:B (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78757 2dbr:C (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78758 2dbr:D (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78759 2dbr:E (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78760 2dbr:F (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78761 2dbv:O (2.2) BS01 NDP 1.2.1.12 GO:0004365 ... P00362 9175858
    78762 2dbv:P (2.2) BS01 NDP 1.2.1.12 GO:0004365 ... P00362 9175858
    78763 2dbv:Q (2.2) BS01 NDP 1.2.1.12 GO:0004365 ... P00362 9175858
    78764 2dbv:R (2.2) BS01 NDP 1.2.1.12 GO:0004365 ... P00362 9175858
    78765 2dbw:B (1.8) BS01 GGL 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78766 2dbw:D (1.8) BS01 GGL 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78767 2dbx:B (1.7) BS01 CA 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78768 2dbx:B (1.7) BS02 GLU 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78769 2dbx:D (1.7) BS01 CA 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78770 2dbx:D (1.7) BS02 GLU 2.3.2.2
    3.4.19.13
    N/A P18956 16618936
    78771 2dby:A (1.76) BS01 GDP ? GO:0005524 ... Q5SJ29 N/A
    78772 2dbz:A (2.45) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78773 2dbz:B (2.45) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    78774 2dc1:A (1.9) BS01 NAD 1.4.1.21 GO:0009435 ... O28440 17651440
    78775 2dc1:B (1.9) BS01 NAD 1.4.1.21 GO:0009435 ... O28440 17651440
    78776 2dc3:A (1.68) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-
    GO:0001666 ... Q8WWM9 16699195
    78777 2dc3:B (1.68) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-
    GO:0001666 ... Q8WWM9 16699195
    78778 2dc6:A (2.3) BS01 73V 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=9100nM
    78779 2dc7:A (1.94) BS01 042 3.4.22.1 GO:0006508 ... P07688 N/A
    78780 2dc8:A (1.94) BS01 59A 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=24000nM
    78781 2dc9:A (1.94) BS01 74M 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=68000nM
    78782 2dca:A (2.11) BS01 75V 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=23nM
    78783 2dcb:A (1.94) BS01 76V 3.4.22.1 GO:0006508 ... P07688 N/A
    78784 2dcc:A (1.93) BS01 77B 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=46000nM
    78785 2dcd:A (2.5) BS01 78A 3.4.22.1 GO:0006508 ... P07688 N/A BindingDB: IC50=29nM
    78786 2dcf:A (1.4) BS01 ACA 3.5.1.46 GO:0019875 ... P07062 17512009
    78787 2dcf:A (1.4) BS02 ACA 3.5.1.46 GO:0019875 ... P07062 17512009
    78788 2dcj:A (2.24) BS01 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78789 2dcj:A (2.24) BS02 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78790 2dcj:B (2.24) BS01 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78791 2dcj:B (2.24) BS02 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78792 2dck:A (2.1) BS01 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78793 2dck:A (2.1) BS02 CA 3.2.1.8 GO:0004553 ... Q9RC94 N/A
    78794 2dcl:A (2.28) BS01 AMP ? N/A O59172 N/A
    78795 2dcl:A (2.28) BS02 AMP ? N/A O59172 N/A
    78796 2dcl:B (2.28) BS01 AMP ? N/A O59172 N/A
    78797 2dcl:B (2.28) BS02 AMP ? N/A O59172 N/A
    78798 2dcl:C (2.28) BS01 AMP ? N/A O59172 N/A
    78799 2dcl:C (2.28) BS02 AMP ? N/A O59172 N/A
    78800 2dcm:A (2.9) BS01 GA0 3.4.14.12 GO:0006508 ... Q7MUW6 16914159

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).