SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    788001 8d8l:5 (2.6) BS01 rna ? GO:0003735 ... P12686 36482135
    788002 8d8l:6 (2.6) BS01 rna ? GO:0003735 ... P53292 36482135
    788003 8d8l:A (2.6) BS01 rna ? GO:0003735 ... Q02950 36482135
    788004 8d8l:B (2.6) BS01 rna ? GO:0003735 ... P32902 36482135
    788005 8d8l:B (2.6) BS02 MG ? GO:0003735 ... P32902 36482135
    788006 8d8l:C (2.6) BS01 rna ? GO:0003735 ... P02381 36482135
    788007 8d8l:D (2.6) BS01 rna ? GO:0003723 ... P27929 36482135
    788008 8d8l:E (2.6) BS01 rna ? GO:0003723 ... P33759 36482135
    788009 8d8l:F (2.6) BS01 rna ? GO:0003735 ... P28778 36482135
    788010 8d8l:G (2.6) BS01 rna ? GO:0000028 ... P47150 36482135
    788011 8d8l:H (2.6) BS01 rna ? GO:0003735 ... Q03799 36482135
    788012 8d8l:I (2.6) BS01 rna ? GO:0003723 ... P38120 36482135
    788013 8d8l:J (2.6) BS01 rna ? GO:0003735 ... Q03201 36482135
    788014 8d8l:K (2.6) BS01 rna ? GO:0003735 ... P42847 36482135
    788015 8d8l:L (2.6) BS01 rna ? GO:0003735 ... P53732 36482135
    788016 8d8l:M (2.6) BS01 rna ? GO:0003676 ... P53937 36482135
    788017 8d8l:N (2.6) BS01 rna ? GO:0003735 ... P10663 36482135
    788018 8d8l:O (2.6) BS01 rna ? GO:0003735 ... P21771 36482135
    788019 8d8l:P (2.6) BS01 rna ? GO:0003735 ... Q02608 36482135
    788020 8d8l:Q (2.6) BS01 rna ? GO:0003735 ... Q03246 36482135
    788021 8d8l:R (2.6) BS01 rna ? GO:0003735 ... P40033 36482135
    788022 8d8l:S (2.6) BS01 rna ? GO:0000028 ... P53733 36482135
    788023 8d8l:T (2.6) BS01 rna ? GO:0003735 ... P38175 36482135
    788024 8d8l:U (2.6) BS01 rna ? GO:0003735 ... P40496 36482135
    788025 8d8l:V (2.6) BS01 rna ? GO:0003735 ... P17558 36482135
    788026 8d8l:W (2.6) BS01 rna ? GO:0003735 ... Q01163 36482135
    788027 8d8l:W (2.6) BS02 ATP ? GO:0003735 ... Q01163 36482135
    788028 8d8l:X (2.6) BS01 rna ? GO:0003735 ... P53305 36482135
    788029 8d8l:Y (2.6) BS01 rna ? GO:0003735 ... Q03976 36482135
    788030 8d8l:Z (2.6) BS01 rna ? GO:0003735 ... O75012 36482135
    788031 8d8m:C (3.1) BS01 dna ? GO:0003677 ... P03856 N/A
    788032 8d8m:C (3.1) BS02 dna ? GO:0003677 ... P03856 N/A
    788033 8d8m:C (3.1) BS03 CA ? GO:0003677 ... P03856 N/A
    788034 8d8n:B (3.6) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36007061
    788035 8d8n:B (3.6) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36007061
    788036 8d8n:B (3.6) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788037 8d8n:B (3.6) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788038 8d8n:B (3.6) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788039 8d8n:B (3.6) BS06 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788040 8d8o:B (3.35) BS01 ZN 3.4.24.79 GO:0004175 ... Q13219 36127359
    788041 8d8p:A (2.75) BS01 HEM ? GO:0004497 ... A0A1Y1RQ53 N/A
    788042 8d8p:B (2.75) BS01 HEM ? GO:0004497 ... A0A1Y1RQ53 N/A
    788043 8d8x:A (1.36) BS01 ETM ? GO:0004104 ... Q9HUP2 N/A
    788044 8d8x:A (1.36) BS02 ETM ? GO:0004104 ... Q9HUP2 N/A
    788045 8d8y:A (1.54) BS01 AT3 ? GO:0004104 ... Q9HUP2 N/A
    788046 8d8y:A (1.54) BS02 ETM ? GO:0004104 ... Q9HUP2 N/A
    788047 8d8y:B (1.54) BS01 AT3 ? GO:0004104 ... Q9HUP2 N/A
    788048 8d8y:B (1.54) BS02 ETM ? GO:0004104 ... Q9HUP2 N/A
    788049 8d8z:A (1.38) BS01 ETM ? GO:0004104 ... Q9HUP2 N/A
    788050 8d8z:B (1.38) BS01 ETM ? GO:0004104 ... Q9HUP2 N/A
    788051 8d94:A (2.44) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788052 8d94:A (2.44) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788053 8d94:A (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788054 8d94:A (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788055 8d94:B (2.44) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788056 8d94:B (2.44) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788057 8d94:B (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788058 8d94:C (2.44) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788059 8d94:C (2.44) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788060 8d94:C (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788061 8d94:C (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788062 8d94:D (2.44) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788063 8d94:D (2.44) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788064 8d94:D (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788065 8d95:A (2.166) BS01 QIE 3.4.21.46 GO:0004252 ... P00746 36272185
    788066 8d96:B (3.35) BS01 rna 2.7.7.- GO:0003677 ... P49643 37069376
    788067 8d96:B (3.35) BS02 dna 2.7.7.- GO:0003677 ... P49643 37069376
    788068 8d96:B (3.35) BS03 SF4 2.7.7.- GO:0003677 ... P49643 37069376
    788069 8d96:C (3.35) BS01 rna 2.7.7.7 GO:0000166 ... P09884 37069376
    788070 8d96:C (3.35) BS02 dna 2.7.7.7 GO:0000166 ... P09884 37069376
    788071 8d96:C (3.35) BS03 DTP 2.7.7.7 GO:0000166 ... P09884 37069376
    788072 8d97:A (3.8) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36007061
    788073 8d97:A (3.8) BS02 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788074 8d97:A (3.8) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788075 8d97:A (3.8) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36007061
    788076 8d98:A (1.66) BS01 QHX ? N/A F8W4B7 36073962
    788077 8d98:A (1.66) BS02 ZN ? N/A F8W4B7 36073962
    788078 8d98:B (1.66) BS01 QHX ? N/A F8W4B7 36073962
    788079 8d98:B (1.66) BS02 ZN ? N/A F8W4B7 36073962
    788080 8d99:A (1.79) BS01 ZN ? N/A F8W4B7 36073962
    788081 8d99:B (1.79) BS01 QH7 ? N/A F8W4B7 36073962
    788082 8d99:B (1.79) BS02 ZN ? N/A F8W4B7 36073962
    788083 8d9a:A (1.75) BS01 QHO ? N/A F8W4B7 36073962
    788084 8d9a:A (1.75) BS02 ZN ? N/A F8W4B7 36073962
    788085 8d9a:B (1.75) BS01 QHO ? N/A F8W4B7 36073962
    788086 8d9a:B (1.75) BS02 ZN ? N/A F8W4B7 36073962
    788087 8d9b:A (1.63) BS01 QI8 ? N/A F8W4B7 36073962
    788088 8d9b:A (1.63) BS02 ZN ? N/A F8W4B7 36073962
    788089 8d9b:B (1.63) BS01 QI8 ? N/A F8W4B7 36073962
    788090 8d9b:B (1.63) BS02 ZN ? N/A F8W4B7 36073962
    788091 8d9c:A (1.82) BS01 QI5 ? N/A F8W4B7 36073962
    788092 8d9c:A (1.82) BS02 ZN ? N/A F8W4B7 36073962
    788093 8d9c:B (1.82) BS01 QI5 ? N/A F8W4B7 36073962
    788094 8d9c:B (1.82) BS02 ZN ? N/A F8W4B7 36073962
    788095 8d9d:A (3.59) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 37069376
    788096 8d9d:B (3.59) BS01 rna ? GO:0003677 ... P49643 37069376
    788097 8d9d:B (3.59) BS02 dna ? GO:0003677 ... P49643 37069376
    788098 8d9d:B (3.59) BS03 SF4 ? GO:0003677 ... P49643 37069376
    788099 8d9d:C (3.59) BS01 rna 2.7.7.7 GO:0000166 ... P09884 37069376
    788100 8d9d:C (3.59) BS02 dna 2.7.7.7 GO:0000166 ... P09884 37069376
    788101 8d9d:C (3.59) BS03 MG 2.7.7.7 GO:0000166 ... P09884 37069376
    788102 8d9d:C (3.59) BS04 ZN 2.7.7.7 GO:0000166 ... P09884 37069376
    788103 8d9d:C (3.59) BS05 ZN 2.7.7.7 GO:0000166 ... P09884 37069376
    788104 8d9d:C (3.59) BS06 DTP 2.7.7.7 GO:0000166 ... P09884 37069376
    788105 8d9e:B (3.76) BS01 rna ? N/A A0A0B0EGF3 36007061
    788106 8d9e:B (3.76) BS02 rna ? N/A A0A0B0EGF3 36007061
    788107 8d9e:B (3.76) BS03 ZN ? N/A A0A0B0EGF3 36007061
    788108 8d9e:B (3.76) BS04 ZN ? N/A A0A0B0EGF3 36007061
    788109 8d9e:B (3.76) BS05 ZN ? N/A A0A0B0EGF3 36007061
    788110 8d9e:B (3.76) BS06 ZN ? N/A A0A0B0EGF3 36007061
    788111 8d9f:B (2.71) BS01 rna ? N/A A0A0B0EGF3 36007061
    788112 8d9f:B (2.71) BS02 ZN ? N/A A0A0B0EGF3 36007061
    788113 8d9f:B (2.71) BS03 ZN ? N/A A0A0B0EGF3 36007061
    788114 8d9f:B (2.71) BS04 ZN ? N/A A0A0B0EGF3 36007061
    788115 8d9f:B (2.71) BS05 ZN ? N/A A0A0B0EGF3 36007061
    788116 8d9g:A (2.57) BS01 rna ? N/A A0A0B0EKL4 36007061
    788117 8d9g:B (2.57) BS01 rna ? N/A A0A0B0EGF3 36007061
    788118 8d9g:B (2.57) BS02 rna ? N/A A0A0B0EGF3 36007061
    788119 8d9g:B (2.57) BS03 ZN ? N/A A0A0B0EGF3 36007061
    788120 8d9g:B (2.57) BS04 ZN ? N/A A0A0B0EGF3 36007061
    788121 8d9g:B (2.57) BS05 ZN ? N/A A0A0B0EGF3 36007061
    788122 8d9g:B (2.57) BS06 ZN ? N/A A0A0B0EGF3 36007061
    788123 8d9h:B (3.6) BS01 rna ? N/A A0A0B0EGF3 36007061
    788124 8d9h:B (3.6) BS02 rna ? N/A A0A0B0EGF3 36007061
    788125 8d9h:B (3.6) BS03 ZN ? N/A A0A0B0EGF3 36007061
    788126 8d9h:B (3.6) BS04 ZN ? N/A A0A0B0EGF3 36007061
    788127 8d9h:B (3.6) BS05 ZN ? N/A A0A0B0EGF3 36007061
    788128 8d9h:B (3.6) BS06 ZN ? N/A A0A0B0EGF3 36007061
    788129 8d9i:B (3.62) BS01 rna ? N/A A0A0B0EGF3 36007061
    788130 8d9i:B (3.62) BS02 rna ? N/A A0A0B0EGF3 36007061
    788131 8d9i:B (3.62) BS03 ZN ? N/A A0A0B0EGF3 36007061
    788132 8d9i:B (3.62) BS04 ZN ? N/A A0A0B0EGF3 36007061
    788133 8d9j:A (2.82) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788134 8d9j:A (2.82) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788135 8d9j:A (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788136 8d9j:B (2.82) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788137 8d9j:B (2.82) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788138 8d9j:B (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788139 8d9j:B (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788140 8d9j:C (2.82) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788141 8d9j:C (2.82) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788142 8d9j:C (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788143 8d9j:C (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788144 8d9j:D (2.82) BS01 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788145 8d9j:D (2.82) BS02 dna 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788146 8d9j:D (2.82) BS03 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788147 8d9j:D (2.82) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    788148 8d9k:B (3.72) BS01 rna ? GO:0005515 ... P57081 36599982
    788149 8d9l:A (4.04) BS01 rna 2.1.1.-
    2.1.1.33
    GO:0000049 ... Q9UBP6 36599982
    788150 8d9l:A (4.04) BS02 SAM 2.1.1.-
    2.1.1.33
    GO:0000049 ... Q9UBP6 36599982
    788151 8d9l:B (4.04) BS01 rna ? GO:0005515 ... P57081 36599982
    788152 8d9m:A (4.2) BS01 HEC ? N/A Q74BG5 36062910
    788153 8d9m:A (4.2) BS02 HEC ? N/A Q74BG5 36062910
    788154 8d9m:A (4.2) BS03 HEC ? N/A Q74BG5 36062910
    788155 8d9m:A (4.2) BS04 HEC ? N/A Q74BG5 36062910
    788156 8d9m:A (4.2) BS05 HEC ? N/A Q74BG5 36062910
    788157 8d9m:A (4.2) BS06 HEC ? N/A Q74BG5 36062910
    788158 8d9m:A (4.2) BS07 HEC ? N/A Q74BG5 36062910
    788159 8d9m:A (4.2) BS08 HEC ? N/A Q74BG5 36062910
    788160 8d9p:A (1.9) BS01 HEM N/A N/A N/A 36213121
    788161 8d9p:A (1.9) BS02 MN N/A N/A N/A 36213121
    788162 8d9p:A (1.9) BS03 MN N/A N/A N/A 36213121
    788163 8d9r:3 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788164 8d9r:4 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788165 8d9r:5 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788166 8d9r:6 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788167 8d9r:7 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788168 8d9r:C (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788169 8d9r:H (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788170 8d9r:J (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788171 8d9r:K (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788172 8d9r:M (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788173 8d9r:O (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788174 8d9r:P (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788175 8d9r:Q (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788176 8d9r:S (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788177 8d9r:X (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788178 8d9r:Z (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788179 8d9r:a (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788180 8d9r:b (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788181 8d9r:c (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788182 8d9r:d (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788183 8d9r:j (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788184 8d9r:k (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788185 8d9r:l (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788186 8d9r:m (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788187 8d9r:n (20.0) BS01 peptide ? GO:0005515 ... P35585 36269825
    788188 8d9r:t (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788189 8d9r:u (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788190 8d9r:v (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788191 8d9r:w (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788192 8d9r:x (20.0) BS01 peptide ? GO:0000139 ... Q96PC3 36269825
    788193 8d9s:3 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788194 8d9s:4 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788195 8d9s:5 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788196 8d9s:6 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788197 8d9s:7 (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788198 8d9s:C (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788199 8d9s:H (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825
    788200 8d9s:J (20.0) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 36269825

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).