SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    788601 8cqw:BK (3.05) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788602 8cqw:BK (3.05) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788603 8cqw:BL (3.05) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    788604 8cqw:BM (3.05) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788605 8cqw:BM (3.05) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788606 8cqw:BN (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788607 8cqw:BN (3.05) BS02 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788608 8cqw:BO (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788609 8cqw:BO (3.05) BS02 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788610 8cqw:BP (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    788611 8cqw:BQ (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C444 N/A
    788612 8cqw:BQ (3.05) BS02 MG N/A GO:0003735 ... A0A8H6C444 N/A
    788613 8cqw:BR (3.05) BS01 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788614 8cqw:BR (3.05) BS02 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788615 8cqw:BS (3.05) BS01 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788616 8cqw:BS (3.05) BS02 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788617 8cqw:BT (3.05) BS01 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788618 8cqw:BT (3.05) BS02 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788619 8cqw:BU (3.05) BS01 rna N/A GO:0003735 ... Q9P843 N/A
    788620 8cqw:BV (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BVY8 N/A
    788621 8cqw:BV (3.05) BS02 MG N/A GO:0003723 ... A0A8H6BVY8 N/A
    788622 8cqw:BW (3.05) BS01 rna N/A GO:0002181 ... A0A8H6F0G8 N/A
    788623 8cqw:BX (3.05) BS01 rna N/A GO:0003674 ... A0A1D8PM75 N/A
    788624 8cqw:BY (3.05) BS01 rna N/A GO:0002181 ... A0A8H6F1M1 N/A
    788625 8cqw:BZ (3.05) BS01 rna N/A GO:0003735 ... O94008 N/A
    788626 8cqw:BZ (3.05) BS02 MG N/A GO:0003735 ... O94008 N/A
    788627 8cqw:BZ (3.05) BS03 MG N/A GO:0003735 ... O94008 N/A
    788628 8cqw:C (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    788629 8cqw:CA (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BW57 N/A
    788630 8cqw:CB (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F171 N/A
    788631 8cqw:CC (3.05) BS01 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788632 8cqw:CC (3.05) BS02 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788633 8cqw:CD (3.05) BS01 rna N/A GO:0003735 ... P47834 N/A
    788634 8cqw:CE (3.05) BS01 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788635 8cqw:CE (3.05) BS02 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788636 8cqw:CE (3.05) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 N/A
    788637 8cqw:CF (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PG16 N/A
    788638 8cqw:CG (3.05) BS01 rna N/A GO:0003735 ... Q96W55 N/A
    788639 8cqw:CG (3.05) BS02 rna N/A GO:0003735 ... Q96W55 N/A
    788640 8cqw:CH (3.05) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    788641 8cqw:CH (3.05) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    788642 8cqw:CJ (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BR69 N/A
    788643 8cqw:CJ (3.05) BS02 3K5 N/A GO:0003735 ... A0A8H6BR69 N/A
    788644 8cqw:CJ (3.05) BS03 ZN N/A GO:0003735 ... A0A8H6BR69 N/A
    788645 8cqw:CK (3.05) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    788646 8cqw:CK (3.05) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    788647 8cqw:CL (3.05) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788648 8cqw:CL (3.05) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788649 8cqw:CN (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    788650 8cqw:CO (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    788651 8cqw:CP (3.05) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    788652 8cqw:CQ (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    788653 8cqw:CR (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    788654 8cqw:CS (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    788655 8cqw:CT (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    788656 8cqw:CU (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    788657 8cqw:CV (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788658 8cqw:CV (3.05) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788659 8cqw:CW (3.05) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    788660 8cqw:CX (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    788661 8cqw:CY (3.05) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    788662 8cqw:CZ (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    788663 8cqw:D (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    788664 8cqw:DA (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    788665 8cqw:DB (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    788666 8cqw:DB (3.05) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    788667 8cqw:DC (3.05) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788668 8cqw:DC (3.05) BS02 MG N/A GO:0003723 ... A0A1D8PK22 N/A
    788669 8cqw:DD (3.05) BS01 rna N/A GO:0000462 ... O94017 N/A
    788670 8cqw:DE (3.05) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    788671 8cqw:DF (3.05) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    788672 8cqw:DG (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    788673 8cqw:DG (3.05) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    788674 8cqw:DH (3.05) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    788675 8cqw:DI (3.05) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    788676 8cqw:DJ (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    788677 8cqw:DK (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    788678 8cqw:DL (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    788679 8cqw:DM (3.05) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    788680 8cqw:DN (3.05) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    788681 8cqw:DN (3.05) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    788682 8cqw:DO (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    788683 8cqw:DP (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    788684 8cqw:DQ (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    788685 8cqw:DQ (3.05) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    788686 8cqw:DR (3.05) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    788687 8cqw:DS (3.05) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    788688 8cqw:DS (3.05) BS02 ZN N/A GO:0000028 ... Q5A109 N/A
    788689 8cqw:DT (3.05) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    788690 8cqw:E (3.05) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    788691 8cqw:E (3.05) BS02 MG N/A GO:0000054 ... A0A8H6BZ90 N/A
    788692 8cqw:F (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    788693 8cqw:G (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    788694 8cqw:G (3.05) BS02 MG N/A GO:0002181 ... A0A1D8PCI6 N/A
    788695 8cqw:H (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    788696 8cqw:H (3.05) BS02 MG N/A GO:0003723 ... A0A8H6BS29 N/A
    788697 8cqw:I (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    788698 8cqw:J (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    788699 8cqw:J (3.05) BS02 MG N/A GO:0003735 ... A0A8H6C655 N/A
    788700 8cqw:K (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788701 8cqw:K (3.05) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788702 8cqw:K (3.05) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    788703 8cqw:L (3.05) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    788704 8cqw:L1 (3.05) BS01 rna N/A GO:0000055 ... A0A8H6F4E7 N/A
    788705 8cqw:M (3.05) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    788706 8cqw:N (3.05) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    788707 8cqw:O (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    788708 8cqw:P (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    788709 8cqw:P0 (3.05) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    788710 8cqw:Q (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    788711 8cqw:Q (3.05) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    788712 8cqw:R (3.05) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788713 8cqw:R (3.05) BS02 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788714 8cqw:R (3.05) BS03 MG N/A GO:0003723 ... A0A1D8PK22 N/A
    788715 8cqw:S (3.05) BS01 rna N/A GO:0000462 ... O94017 N/A
    788716 8cqw:T (3.05) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    788717 8cqw:U (3.05) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    788718 8cqw:V (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    788719 8cqw:W (3.05) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    788720 8cqw:X (3.05) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    788721 8cqw:Y (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    788722 8cqw:Y (3.05) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    788723 8cqw:Z (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    788724 8cqw:Z (3.05) BS02 MG N/A GO:0003735 ... A0A8H6F0V0 N/A
    788725 8cqw:a (3.05) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    788726 8cqw:b (3.05) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    788727 8cqw:c (3.05) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    788728 8cqw:c (3.05) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    788729 8cqw:d (3.05) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    788730 8cqw:e (3.05) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    788731 8cqw:f (3.05) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    788732 8cqw:f (3.05) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    788733 8cqw:g (3.05) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    788734 8cqw:h (3.05) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    788735 8cqw:i (3.05) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788736 8cqw:i (3.05) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788737 8cqw:i (3.05) BS03 MG N/A GO:0000723 ... A0A1D8PK71 N/A
    788738 8cqw:j (3.05) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    788739 8cqw:j (3.05) BS02 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    788740 8cqw:j (3.05) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    788741 8cqw:k (3.05) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    788742 8cqw:k (3.05) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    788743 8cqw:k (3.05) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    788744 8cqw:k (3.05) BS04 MG N/A GO:0000027 ... Q59LS1 N/A
    788745 8cqw:l (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    788746 8cqw:l (3.05) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    788747 8cqw:l1 (3.05) BS01 rna N/A GO:0000055 ... A0A8H6F4E7 N/A
    788748 8cqw:m (3.05) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    788749 8cqw:m (3.05) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    788750 8cqw:n (3.05) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    788751 8cqw:o (3.05) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    788752 8cqw:o (3.05) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    788753 8cqw:p (3.05) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    788754 8cqw:p (3.05) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    788755 8cqw:p0 (3.05) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    788756 8cqw:q (3.05) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    788757 8cqw:r (3.05) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    788758 8cqw:r (3.05) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    788759 8cqw:r (3.05) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    788760 8cqw:r (3.05) BS04 MG N/A GO:0003735 ... Q5AIB8 N/A
    788761 8cqw:s (3.05) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    788762 8cqw:s (3.05) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    788763 8cqw:t (3.05) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    788764 8cqw:t (3.05) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    788765 8cqw:u (3.05) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    788766 8cqw:v (3.05) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    788767 8cqw:v (3.05) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    788768 8cqw:v (3.05) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    788769 8cqw:v (3.05) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    788770 8cqw:w (3.05) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    788771 8cqw:w (3.05) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    788772 8cqw:x (3.05) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788773 8cqw:x (3.05) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788774 8cqw:x (3.05) BS03 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    788775 8cqw:x (3.05) BS04 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    788776 8cqw:y (3.05) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    788777 8cqw:z (3.05) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788778 8cqw:z (3.05) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788779 8cqw:z (3.05) BS03 MG N/A GO:0003723 ... A0A1D8PK40 N/A
    788780 8cqx:A (2.27) BS01 ADP 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788781 8cqx:A (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788782 8cqx:B (2.27) BS01 ADP 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788783 8cqx:B (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788784 8cqx:C (2.27) BS01 ADP 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788785 8cqx:C (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788786 8cqx:D (2.27) BS01 ADP 2.7.1.15 GO:0004747 ... A0ACD6B9W2 N/A
    788787 8cqy:A (1.7) BS01 peptide 3.1.3.48 N/A P26045 37200868
    788788 8cr0:X (1.22) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 37283561
    788789 8cr0:X (1.22) BS02 VI6 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 37283561
    788790 8cr3:A (1.12) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    788791 8cr3:A (1.12) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    788792 8cr4:A (0.91) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    788793 8cr4:A (0.91) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    788794 8cr7:A (1.5) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    788795 8cr7:A (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    788796 8cr7:B (1.5) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    788797 8cr7:B (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    788798 8crc:A (1.65) BS01 VIH 2.7.11.21 N/A P53350 37603740
    788799 8crd:A (1.35) BS01 BYN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    788800 8crd:A (1.35) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).