SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    788801 8cre:0 (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788802 8cre:0 (3.0) BS02 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788803 8cre:12 (3.0) BS01 rna N/A GO:0000027 ... A0A8H6C5X8 N/A
    788804 8cre:2 (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788805 8cre:2 (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788806 8cre:5 (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    788807 8cre:6 (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C444 N/A
    788808 8cre:7 (3.0) BS01 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788809 8cre:7 (3.0) BS02 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788810 8cre:8 (3.0) BS01 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788811 8cre:8 (3.0) BS02 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788812 8cre:9 (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788813 8cre:9 (3.0) BS02 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788814 8cre:AA (3.0) BS01 rna N/A GO:0003735 ... Q9P843 N/A
    788815 8cre:AB (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BVY8 N/A
    788816 8cre:AB (3.0) BS02 MG N/A GO:0003723 ... A0A8H6BVY8 N/A
    788817 8cre:AC (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F0G8 N/A
    788818 8cre:AD (3.0) BS01 rna N/A GO:0003674 ... A0A1D8PM75 N/A
    788819 8cre:AE (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F1M1 N/A
    788820 8cre:AE (3.0) BS02 MG N/A GO:0002181 ... A0A8H6F1M1 N/A
    788821 8cre:AF (3.0) BS01 rna N/A GO:0003735 ... O94008 N/A
    788822 8cre:AF (3.0) BS02 MG N/A GO:0003735 ... O94008 N/A
    788823 8cre:AG (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BW57 N/A
    788824 8cre:AG (3.0) BS02 MG N/A GO:0003735 ... A0A8H6BW57 N/A
    788825 8cre:AG (3.0) BS03 MG N/A GO:0003735 ... A0A8H6BW57 N/A
    788826 8cre:AH (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F171 N/A
    788827 8cre:AH (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F171 N/A
    788828 8cre:AH (3.0) BS03 ZN N/A GO:0003735 ... A0A8H6F171 N/A
    788829 8cre:AH (3.0) BS04 MG N/A GO:0003735 ... A0A8H6F171 N/A
    788830 8cre:AI (3.0) BS01 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788831 8cre:AI (3.0) BS02 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788832 8cre:AJ (3.0) BS01 rna N/A GO:0003735 ... P47834 N/A
    788833 8cre:AK (3.0) BS01 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788834 8cre:AK (3.0) BS02 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788835 8cre:AK (3.0) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 N/A
    788836 8cre:AL (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PG16 N/A
    788837 8cre:AM (3.0) BS01 rna N/A GO:0003735 ... Q96W55 N/A
    788838 8cre:AM (3.0) BS02 rna N/A GO:0003735 ... Q96W55 N/A
    788839 8cre:AM (3.0) BS03 MG N/A GO:0003735 ... Q96W55 N/A
    788840 8cre:AN (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    788841 8cre:AN (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    788842 8cre:AP (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BR69 N/A
    788843 8cre:AP (3.0) BS02 3K5 N/A GO:0003735 ... A0A8H6BR69 N/A
    788844 8cre:AP (3.0) BS03 ZN N/A GO:0003735 ... A0A8H6BR69 N/A
    788845 8cre:AP (3.0) BS04 MG N/A GO:0003735 ... A0A8H6BR69 N/A
    788846 8cre:AQ (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    788847 8cre:AQ (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    788848 8cre:AR (3.0) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    788849 8cre:AW (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    788850 8cre:AW (3.0) BS02 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    788851 8cre:AW (3.0) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    788852 8cre:AW (3.0) BS04 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    788853 8cre:AX (3.0) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    788854 8cre:AY (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    788855 8cre:AY (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    788856 8cre:AZ (3.0) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    788857 8cre:AZ (3.0) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    788858 8cre:AZ (3.0) BS03 MG N/A GO:0000027 ... G1UAA6 N/A
    788859 8cre:BA (3.0) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    788860 8cre:BB (3.0) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    788861 8cre:BB (3.0) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    788862 8cre:BB (3.0) BS03 MG N/A GO:0000463 ... A0A8H6BVN2 N/A
    788863 8cre:BC (3.0) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    788864 8cre:BC (3.0) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    788865 8cre:BD (3.0) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    788866 8cre:BE (3.0) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    788867 8cre:BE (3.0) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    788868 8cre:BE (3.0) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    788869 8cre:BF (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    788870 8cre:BF (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    788871 8cre:BG (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    788872 8cre:BG (3.0) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    788873 8cre:BH (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    788874 8cre:BI (3.0) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    788875 8cre:BI (3.0) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    788876 8cre:BJ (3.0) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    788877 8cre:BJ (3.0) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    788878 8cre:BK (3.0) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788879 8cre:BK (3.0) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    788880 8cre:BL (3.0) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    788881 8cre:BM (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788882 8cre:BM (3.0) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    788883 8cre:BN (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788884 8cre:BN (3.0) BS02 rna N/A GO:0003735 ... A0A8H6BZJ3 N/A
    788885 8cre:BO (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788886 8cre:BO (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F1C8 N/A
    788887 8cre:BP (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    788888 8cre:BQ (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C444 N/A
    788889 8cre:BQ (3.0) BS02 MG N/A GO:0003735 ... A0A8H6C444 N/A
    788890 8cre:BR (3.0) BS01 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788891 8cre:BR (3.0) BS02 rna N/A GO:0002181 ... A0A8H6C4U1 N/A
    788892 8cre:BS (3.0) BS01 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788893 8cre:BS (3.0) BS02 rna N/A GO:0000027 ... A0A8H6F6A1 N/A
    788894 8cre:BT (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788895 8cre:BT (3.0) BS02 rna N/A GO:0003723 ... A0A8H6F3X2 N/A
    788896 8cre:BU (3.0) BS01 rna N/A GO:0003735 ... Q9P843 N/A
    788897 8cre:BV (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BVY8 N/A
    788898 8cre:BW (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F0G8 N/A
    788899 8cre:BX (3.0) BS01 rna N/A GO:0003674 ... A0A1D8PM75 N/A
    788900 8cre:BY (3.0) BS01 rna N/A GO:0002181 ... A0A8H6F1M1 N/A
    788901 8cre:BZ (3.0) BS01 rna N/A GO:0003735 ... O94008 N/A
    788902 8cre:BZ (3.0) BS02 MG N/A GO:0003735 ... O94008 N/A
    788903 8cre:C (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    788904 8cre:CA (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BW57 N/A
    788905 8cre:CB (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F171 N/A
    788906 8cre:CC (3.0) BS01 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788907 8cre:CC (3.0) BS02 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    788908 8cre:CD (3.0) BS01 rna N/A GO:0003735 ... P47834 N/A
    788909 8cre:CE (3.0) BS01 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788910 8cre:CE (3.0) BS02 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    788911 8cre:CE (3.0) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 N/A
    788912 8cre:CF (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PG16 N/A
    788913 8cre:CG (3.0) BS01 rna N/A GO:0003735 ... Q96W55 N/A
    788914 8cre:CG (3.0) BS02 rna N/A GO:0003735 ... Q96W55 N/A
    788915 8cre:CH (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    788916 8cre:CH (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    788917 8cre:CJ (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BR69 N/A
    788918 8cre:CJ (3.0) BS02 3K5 N/A GO:0003735 ... A0A8H6BR69 N/A
    788919 8cre:CJ (3.0) BS03 ZN N/A GO:0003735 ... A0A8H6BR69 N/A
    788920 8cre:CK (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    788921 8cre:CK (3.0) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    788922 8cre:CL (3.0) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788923 8cre:CL (3.0) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    788924 8cre:CN (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    788925 8cre:CO (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    788926 8cre:CP (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    788927 8cre:CQ (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    788928 8cre:CR (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    788929 8cre:CS (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    788930 8cre:CT (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    788931 8cre:CU (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    788932 8cre:CV (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788933 8cre:CV (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788934 8cre:CW (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    788935 8cre:CX (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    788936 8cre:CY (3.0) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    788937 8cre:CZ (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    788938 8cre:D (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    788939 8cre:DA (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    788940 8cre:DB (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    788941 8cre:DB (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    788942 8cre:DC (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788943 8cre:DC (3.0) BS02 MG N/A GO:0003723 ... A0A1D8PK22 N/A
    788944 8cre:DD (3.0) BS01 rna N/A GO:0000462 ... O94017 N/A
    788945 8cre:DE (3.0) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    788946 8cre:DF (3.0) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    788947 8cre:DG (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    788948 8cre:DG (3.0) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    788949 8cre:DH (3.0) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    788950 8cre:DI (3.0) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    788951 8cre:DJ (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    788952 8cre:DK (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    788953 8cre:DL (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    788954 8cre:DM (3.0) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    788955 8cre:DN (3.0) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    788956 8cre:DN (3.0) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    788957 8cre:DO (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    788958 8cre:DP (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    788959 8cre:DQ (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    788960 8cre:DQ (3.0) BS02 MG N/A GO:0002181 ... A0A1D8PTR4 N/A
    788961 8cre:DQ (3.0) BS03 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    788962 8cre:DR (3.0) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    788963 8cre:DS (3.0) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    788964 8cre:DS (3.0) BS02 ZN N/A GO:0000028 ... Q5A109 N/A
    788965 8cre:DT (3.0) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    788966 8cre:E (3.0) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    788967 8cre:F (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    788968 8cre:G (3.0) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    788969 8cre:G (3.0) BS02 MG N/A GO:0002181 ... A0A1D8PCI6 N/A
    788970 8cre:H (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    788971 8cre:I (3.0) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    788972 8cre:J (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    788973 8cre:J (3.0) BS02 MG N/A GO:0003735 ... A0A8H6C655 N/A
    788974 8cre:K (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788975 8cre:K (3.0) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    788976 8cre:K (3.0) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    788977 8cre:L (3.0) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    788978 8cre:L1 (3.0) BS01 rna N/A GO:0000055 ... A0A8H6F4E7 N/A
    788979 8cre:M (3.0) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    788980 8cre:N (3.0) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    788981 8cre:O (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    788982 8cre:P (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    788983 8cre:P0 (3.0) BS01 rna N/A GO:0000027 ... G1UA71 N/A
    788984 8cre:Q (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    788985 8cre:Q (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    788986 8cre:R (3.0) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788987 8cre:R (3.0) BS02 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    788988 8cre:R (3.0) BS03 MG N/A GO:0003723 ... A0A1D8PK22 N/A
    788989 8cre:S (3.0) BS01 rna N/A GO:0000462 ... O94017 N/A
    788990 8cre:T (3.0) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    788991 8cre:U (3.0) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    788992 8cre:V (3.0) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    788993 8cre:V (3.0) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    788994 8cre:W (3.0) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    788995 8cre:X (3.0) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    788996 8cre:Y (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    788997 8cre:Y (3.0) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    788998 8cre:Z (3.0) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    788999 8cre:a (3.0) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    789000 8cre:b (3.0) BS01 rna N/A N/A A0A8H6EZQ8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).