SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    790201 8dnt:E (3.18) BS01 peptide ? N/A U5YKE0 37872153
    790202 8dnt:H (3.18) BS01 peptide N/A N/A N/A 37872153
    790203 8dnt:I (3.18) BS01 peptide N/A N/A N/A 37872153
    790204 8dnt:K (3.18) BS01 peptide ? N/A U5YKE0 37872153
    790205 8dnt:M (3.18) BS01 peptide N/A N/A N/A 37872153
    790206 8dnt:P (3.18) BS01 peptide N/A N/A N/A 37872153
    790207 8dnt:R (3.18) BS01 peptide ? N/A U5YKE0 37872153
    790208 8dnt:V (3.18) BS01 peptide N/A N/A N/A 37872153
    790209 8dnt:W (3.18) BS01 peptide N/A N/A N/A 37872153
    790210 8dnt:Y (3.18) BS01 peptide ? N/A U5YKE0 37872153
    790211 8dnu:A (2.73) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 36450447
    790212 8dnx:A (2.98) BS01 peptide ? GO:0005048 ... P61619 37169959
    790213 8dny:A (2.85) BS01 peptide ? GO:0005048 ... P61619 37169959
    790214 8dnz:A (2.57) BS01 peptide ? GO:0005048 ... P61619 37169959
    790215 8do0:A (2.86) BS01 Q6B ? GO:0005048 ... P61619 37169959
    790216 8do1:A (3.01) BS01 SXF ? GO:0005048 ... P61619 37169959
    790217 8do2:A (2.95) BS01 SXU ? GO:0005048 ... P61619 37169959
    790218 8do3:A (3.22) BS01 SWR ? GO:0005048 ... P61619 37169959
    790219 8do5:A (2.1) BS01 KRN ? GO:0008840 ... Q0KK75 36522814
    790220 8do5:B (2.1) BS01 KRN ? GO:0008840 ... Q0KK75 36522814
    790221 8do6:B (3.1) BS01 rna ? GO:0003723 ... Q5HK92 37352230
    790222 8do6:B (3.1) BS02 rna ? GO:0003723 ... Q5HK92 37352230
    790223 8do6:C (3.1) BS01 rna ? GO:0003723 ... A0A2R3SZR9 37352230
    790224 8do6:D (3.1) BS01 rna ? GO:0003723 ... A0A2R3SZR9 37352230
    790225 8do6:E (3.1) BS01 rna ? GO:0003723 ... Q5HK91 37352230
    790226 8do6:E (3.1) BS02 rna ? GO:0003723 ... Q5HK91 37352230
    790227 8do6:F (3.1) BS01 rna ? GO:0003723 ... Q5HK91 37352230
    790228 8do6:F (3.1) BS02 rna ? GO:0003723 ... Q5HK91 37352230
    790229 8do6:G (3.1) BS01 rna ? GO:0003723 ... Q5HK91 37352230
    790230 8do6:G (3.1) BS02 rna ? GO:0003723 ... Q5HK91 37352230
    790231 8do6:H (3.1) BS01 rna ? GO:0003723 ... Q5HK93 37352230
    790232 8do6:H (3.1) BS02 rna ? GO:0003723 ... Q5HK93 37352230
    790233 8do8:A (2.41) BS01 peptide ? GO:0000045 ... Q9BSB4 36791199
    790234 8do8:B (2.41) BS01 peptide ? GO:0000045 ... O75143 36791199
    790235 8do8:C (2.41) BS01 peptide ? GO:0000045 ... Q9BSB4 36791199
    790236 8do8:D (2.41) BS01 peptide ? GO:0000045 ... O75143 36791199
    790237 8doc:A (2.1) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 37279401
    790238 8doc:A (2.1) BS02 SYL 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 37279401
    790239 8dof:A (2.6) BS01 T4L 6.3.2.8 GO:0005524 ... Q9HW02 N/A
    790240 8dog:A (1.48) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790241 8dog:A (1.48) BS02 H48 ? GO:0004601 ... Q9NAV7 36272837
    790242 8dog:B (1.48) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790243 8dog:B (1.48) BS02 H48 ? GO:0004601 ... Q9NAV7 36272837
    790244 8doh:A (1.75) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790245 8doh:A (1.75) BS02 T0U ? GO:0004601 ... Q9NAV7 36272837
    790246 8doh:B (1.75) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790247 8doh:B (1.75) BS02 T0U ? GO:0004601 ... Q9NAV7 36272837
    790248 8doi:A (1.93) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790249 8doi:A (1.93) BS02 5VL ? GO:0004601 ... Q9NAV7 36272837
    790250 8doi:B (1.93) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790251 8doi:B (1.93) BS02 5VL ? GO:0004601 ... Q9NAV7 36272837
    790252 8doj:A (1.3) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790253 8doj:A (1.3) BS02 T1I ? GO:0004601 ... Q9NAV7 36272837
    790254 8doj:B (1.3) BS01 HEM ? GO:0004601 ... Q9NAV7 36272837
    790255 8dok:C (3.2) BS01 BMA N/A N/A N/A 37872202
    790256 8dok:C (3.2) BS02 MAN N/A N/A N/A 37872202
    790257 8dok:C (3.2) BS03 MAN N/A N/A N/A 37872202
    790258 8dok:C (3.2) BS04 MAN N/A N/A N/A 37872202
    790259 8dok:D (3.2) BS01 BMA N/A N/A N/A 37872202
    790260 8dok:G (3.2) BS01 BMA N/A N/A N/A 37872202
    790261 8dok:G (3.2) BS02 MAN N/A N/A N/A 37872202
    790262 8dok:G (3.2) BS03 MAN N/A N/A N/A 37872202
    790263 8dok:K (3.2) BS01 BMA N/A N/A N/A 37872202
    790264 8dok:K (3.2) BS02 MAN N/A N/A N/A 37872202
    790265 8dok:K (3.2) BS03 MAN N/A N/A N/A 37872202
    790266 8dok:K (3.2) BS04 MAN N/A N/A N/A 37872202
    790267 8dok:L (3.2) BS01 BMA N/A N/A N/A 37872202
    790268 8dor:A (1.35) BS01 FMN ? GO:0000166 ... A6T5Y2 38990055
    790269 8dor:A (1.35) BS02 FMN ? GO:0000166 ... A6T5Y2 38990055
    790270 8dor:B (1.35) BS01 FMN ? GO:0000166 ... A6T5Y2 38990055
    790271 8dor:B (1.35) BS02 FMN ? GO:0000166 ... A6T5Y2 38990055
    790272 8dor:C (1.35) BS01 FMN ? GO:0000166 ... A6T5Y2 38990055
    790273 8dor:C (1.35) BS02 FMN ? GO:0000166 ... A6T5Y2 38990055
    790274 8dor:D (1.35) BS01 FMN ? GO:0000166 ... A6T5Y2 38990055
    790275 8dor:D (1.35) BS02 FMN ? GO:0000166 ... A6T5Y2 38990055
    790276 8dos:A (1.872) BS01 FAD 1.18.1.2
    1.19.1.1
    GO:0000166 ... A0A0G3NED2 N/A
    790277 8dos:A (1.872) BS02 NAP 1.18.1.2
    1.19.1.1
    GO:0000166 ... A0A0G3NED2 N/A
    790278 8dos:B (1.872) BS01 FAD 1.18.1.2
    1.19.1.1
    GO:0000166 ... A0A0G3NED2 N/A
    790279 8dos:B (1.872) BS02 NAP 1.18.1.2
    1.19.1.1
    GO:0000166 ... A0A0G3NED2 N/A
    790280 8dou:A (3.54) BS01 ADP ? GO:0005515 ... O67181 36064941
    790281 8dou:C (3.54) BS01 ADP ? GO:0005515 ... O67181 36064941
    790282 8dov:A (2.1) BS01 HEM ? GO:0004601 ... P69905 36693107
    790283 8dov:B (2.1) BS01 HEM ? GO:0004601 ... P68871 36693107
    790284 8dov:C (2.1) BS01 HEM ? GO:0004601 ... P69905 36693107
    790285 8dov:D (2.1) BS01 HEM ? GO:0004601 ... P68871 36693107
    790286 8dov:E (2.1) BS01 HEM ? GO:0004601 ... P69905 36693107
    790287 8dov:F (2.1) BS01 HEM ? GO:0004601 ... P68871 36693107
    790288 8dov:G (2.1) BS01 HEM ? GO:0004601 ... P69905 36693107
    790289 8dov:H (2.1) BS01 HEM ? GO:0004601 ... P68871 36693107
    790290 8dov:I (2.1) BS01 HEM ? N/A Q99YA0 36693107
    790291 8dov:J (2.1) BS01 HEM ? N/A Q99YA0 36693107
    790292 8dov:K (2.1) BS01 HEM ? N/A Q99YA0 36693107
    790293 8dow:C (3.69) BS01 MAN N/A N/A N/A N/A
    790294 8dow:D (3.69) BS01 MAN N/A N/A N/A N/A
    790295 8dow:D (3.69) BS02 MAN N/A N/A N/A N/A
    790296 8dow:G (3.69) BS01 MAN N/A N/A N/A N/A
    790297 8dow:H (3.69) BS01 MAN N/A N/A N/A N/A
    790298 8dow:H (3.69) BS02 MAN N/A N/A N/A N/A
    790299 8dow:K (3.69) BS01 MAN N/A N/A N/A N/A
    790300 8dow:L (3.69) BS01 MAN N/A N/A N/A N/A
    790301 8dow:L (3.69) BS02 MAN N/A N/A N/A N/A
    790302 8dox:A (1.46) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36841831
    790303 8doy:A (1.59) BS01 T1X 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36338434
    790304 8doy:B (1.59) BS01 T1X 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36338434
    790305 8dp1:E (3.46) BS01 MAN N/A N/A N/A N/A
    790306 8dp1:E (3.46) BS02 MAN N/A N/A N/A N/A
    790307 8dp1:F (3.46) BS01 MAN N/A N/A N/A N/A
    790308 8dp1:F (3.46) BS02 MAN N/A N/A N/A N/A
    790309 8dp1:F (3.46) BS03 MAN N/A N/A N/A N/A
    790310 8dp1:M (3.46) BS01 MAN N/A N/A N/A N/A
    790311 8dp1:M (3.46) BS02 MAN N/A N/A N/A N/A
    790312 8dp1:N (3.46) BS01 BMA N/A N/A N/A N/A
    790313 8dp1:N (3.46) BS02 MAN N/A N/A N/A N/A
    790314 8dp1:O (3.46) BS01 MAN N/A N/A N/A N/A
    790315 8dp1:O (3.46) BS02 MAN N/A N/A N/A N/A
    790316 8dp1:R (3.46) BS01 BMA N/A N/A N/A N/A
    790317 8dp1:R (3.46) BS02 MAN N/A N/A N/A N/A
    790318 8dp2:A (1.6) BS01 UMA 6.3.2.9 GO:0005524 ... Q9HVZ9 N/A
    790319 8dp3:H (1.91) BS01 rna N/A N/A N/A 37029118
    790320 8dp3:L (1.91) BS01 rna N/A N/A N/A 37029118
    790321 8dp5:C (3.1) BS01 peptide ? GO:0004860 ... P31946 37336883
    790322 8dp5:D (3.1) BS01 peptide ? GO:0000165 ... P62258 37336883
    790323 8dp7:A (3.35) BS01 LW8 ? GO:0022857 ... B6JM49 36347253
    790324 8dp7:B (3.35) BS01 LW8 ? GO:0022857 ... B6JM49 36347253
    790325 8dp7:C (3.35) BS01 LW8 ? GO:0022857 ... B6JM49 36347253
    790326 8dp7:D (3.35) BS01 LW8 ? GO:0022857 ... B6JM49 36347253
    790327 8dp7:E (3.35) BS01 LW8 ? GO:0022857 ... B6JM49 36347253
    790328 8dpb:A (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    790329 8dpb:B (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    790330 8dpc:A (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    790331 8dpc:C (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    790332 8dpc:E (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    790333 8dpc:G (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    790334 8dpd:A (1.51) BS01 MG ? GO:0006091 ... P42212 N/A
    790335 8dpd:A (1.51) BS02 MG ? GO:0006091 ... P42212 N/A
    790336 8dpf:A (2.84) BS01 T4U ? GO:0004930 ... P28335 35977511
    790337 8dpg:A (3.6) BS01 91Q ? GO:0004930 ... P28335 35977511
    790338 8dpg:A (3.6) BS02 CLR ? GO:0004930 ... P28335 35977511
    790339 8dph:A (3.2) BS01 T4U ? GO:0004930 ... P28335 35977511
    790340 8dpi:A (3.4) BS01 T4U ? GO:0004930 ... P28335 35977511
    790341 8dpi:A (3.4) BS02 CLR ? GO:0004930 ... P28335 35977511
    790342 8dpj:A (2.45) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    790343 8dpj:A (2.45) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    790344 8dpj:A (2.45) BS03 QQ4 ? GO:0003723 ... C6H0Y9 36603507
    790345 8dpj:A (2.45) BS04 SE9 ? GO:0003723 ... C6H0Y9 36603507
    790346 8dpl:C (2.53) BS01 MAN N/A N/A N/A 37938974
    790347 8dpl:C (2.53) BS02 MAN N/A N/A N/A 37938974
    790348 8dpl:H (2.53) BS01 MAN N/A N/A N/A 37938974
    790349 8dpl:H (2.53) BS02 MAN N/A N/A N/A 37938974
    790350 8dpl:O (2.53) BS01 MAN N/A N/A N/A 37938974
    790351 8dpl:O (2.53) BS02 MAN N/A N/A N/A 37938974
    790352 8dpm:C (3.0) BS01 MAN N/A N/A N/A 37938974
    790353 8dpm:C (3.0) BS02 MAN N/A N/A N/A 37938974
    790354 8dpm:H (3.0) BS01 MAN N/A N/A N/A 37938974
    790355 8dpm:H (3.0) BS02 MAN N/A N/A N/A 37938974
    790356 8dpm:M (3.0) BS01 MAN N/A N/A N/A 37938974
    790357 8dpm:M (3.0) BS02 MAN N/A N/A N/A 37938974
    790358 8dpn:A (2.49) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 35901182
    790359 8dpn:A (2.49) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 35901182
    790360 8dpn:B (2.49) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 35901182
    790361 8dpn:B (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    790362 8dpn:B (2.49) BS03 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    790363 8dpn:C (2.49) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 35901182
    790364 8dpn:C (2.49) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 35901182
    790365 8dpn:D (2.49) BS01 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    790366 8dpn:D (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    790367 8dpn:D (2.49) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 35901182
    790368 8dpo:A (2.6) BS01 AZM 4.2.1.1 GO:0004089 ... Q50940 N/A
    790369 8dpo:A (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    790370 8dpo:C (2.6) BS01 AZM 4.2.1.1 GO:0004089 ... Q50940 N/A
    790371 8dpo:C (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    790372 8dpo:E (2.6) BS01 AZM 4.2.1.1 GO:0004089 ... Q50940 N/A
    790373 8dpo:E (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    790374 8dpo:G (2.6) BS01 AZM 4.2.1.1 GO:0004089 ... Q50940 N/A
    790375 8dpo:G (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    790376 8dpr:A (2.0) BS01 T43 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36841831
    790377 8dpr:A (2.0) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36841831
    790378 8dq0:C (3.74) BS01 K5G ? GO:0000976 ... P54292 36379213
    790379 8dq0:D (3.74) BS01 K5G ? GO:0000976 ... P54292 36379213
    790380 8dq1:C (4.1) BS01 dna ? GO:0000976 ... P54292 36379213
    790381 8dq1:C (4.1) BS02 dna ? GO:0000976 ... P54292 36379213
    790382 8dq1:C (4.1) BS03 K5G ? GO:0000976 ... P54292 36379213
    790383 8dq1:D (4.1) BS01 dna ? GO:0000976 ... P54292 36379213
    790384 8dq1:D (4.1) BS02 dna ? GO:0000976 ... P54292 36379213
    790385 8dq1:D (4.1) BS03 K5G ? GO:0000976 ... P54292 36379213
    790386 8dq2:A (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790387 8dq2:A (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790388 8dq2:A (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790389 8dq2:B (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790390 8dq2:B (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790391 8dq2:B (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790392 8dq2:C (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790393 8dq2:C (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790394 8dq2:C (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790395 8dq2:D (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790396 8dq2:D (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790397 8dq2:D (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    790398 8dq3:A (1.67) BS01 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    790399 8dq3:A (1.67) BS02 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    790400 8dq3:A (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).