SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791601 8e24:D (2.34) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12
    GO:0003676 ... O75417 36126059
    791602 8e24:D (2.34) BS04 UA6 2.7.7.49
    2.7.7.7
    3.6.4.12
    GO:0003676 ... O75417 36126059
    791603 8e25:A (1.868) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36775130
    791604 8e25:B (1.868) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36775130
    791605 8e26:A (1.845) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36775130
    791606 8e26:B (1.845) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36775130
    791607 8e28:A (3.1) BS01 rna 3.1.13.- GO:0000175 ... Q8IYB7 36823385
    791608 8e29:A (3.1) BS01 rna 3.1.13.- GO:0000175 ... Q8IYB7 36823385
    791609 8e2a:A (2.8) BS01 rna 3.1.13.- GO:0000175 ... Q8IYB7 36823385
    791610 8e2c:A (2.4) BS01 peptide ? N/A Q2FYI5 38639993
    791611 8e2l:A (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791612 8e2l:A (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791613 8e2l:B (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791614 8e2l:B (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791615 8e2l:B (3.51) BS03 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791616 8e2l:B (3.51) BS04 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    791617 8e2l:C (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791618 8e2l:C (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791619 8e2l:C (3.51) BS03 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791620 8e2l:D (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791621 8e2l:D (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791622 8e2l:D (3.51) BS03 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791623 8e2l:E (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791624 8e2l:E (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791625 8e2l:E (3.51) BS03 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791626 8e2l:F (3.51) BS01 dna ? GO:0003678 ... A0A4W6C5C5 36400570
    791627 8e2l:F (3.51) BS02 ATP ? GO:0003678 ... A0A4W6C5C5 36400570
    791628 8e2l:F (3.51) BS03 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    791629 8e2m:A (1.904) BS01 UB6 2.7.10.2 GO:0004672 ... Q06187 36314537
    791630 8e2p:A (2.72) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791631 8e2p:A (2.72) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791632 8e2p:A (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791633 8e2p:B (2.72) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791634 8e2p:B (2.72) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791635 8e2p:B (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791636 8e2p:C (2.72) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791637 8e2p:C (2.72) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791638 8e2p:C (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791639 8e2p:D (2.72) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791640 8e2p:D (2.72) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791641 8e2p:D (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791642 8e2q:A (2.34) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791643 8e2q:A (2.34) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791644 8e2q:A (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791645 8e2q:B (2.34) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791646 8e2q:B (2.34) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791647 8e2q:B (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791648 8e2q:C (2.34) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791649 8e2q:C (2.34) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791650 8e2q:C (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791651 8e2q:D (2.34) BS01 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791652 8e2q:D (2.34) BS02 dna 3.5.4.33 GO:0002100 ... P68398 36624149
    791653 8e2q:D (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791654 8e2r:A (2.22) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791655 8e2r:B (2.22) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791656 8e2s:A (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791657 8e2s:B (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791658 8e2s:C (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791659 8e2s:D (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791660 8e2s:E (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791661 8e2s:F (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791662 8e2s:G (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791663 8e2s:H (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    791664 8e2z:A (1.13) BS01 peptide ? N/A Q5SS57 37596268
    791665 8e30:K (1.91) BS01 rna ? GO:0000027 ... P60422 N/A
    791666 8e30:L (1.91) BS01 rna ? GO:0002181 ... P02413 N/A
    791667 8e30:M (1.91) BS01 rna ? GO:0001070 ... P60723 N/A
    791668 8e30:N (1.91) BS01 rna ? GO:0000027 ... P60438 N/A
    791669 8e30:O (1.91) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791670 8e30:P (1.91) BS01 rna ? GO:0002181 ... P61175 N/A
    791671 8e30:Q (1.91) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791672 8e30:R (1.91) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791673 8e32:K (2.35) BS01 rna ? GO:0000027 ... P60422 N/A
    791674 8e32:L (2.35) BS01 rna ? GO:0002181 ... P02413 N/A
    791675 8e32:M (2.35) BS01 rna ? GO:0001070 ... P60723 N/A
    791676 8e32:N (2.35) BS01 rna ? GO:0000027 ... P60438 N/A
    791677 8e32:O (2.35) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791678 8e32:P (2.35) BS01 rna ? GO:0002181 ... P61175 N/A
    791679 8e32:Q (2.35) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791680 8e32:R (2.35) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791681 8e33:K (2.23) BS01 rna ? GO:0000027 ... P60422 N/A
    791682 8e33:L (2.23) BS01 rna ? GO:0002181 ... P02413 N/A
    791683 8e33:M (2.23) BS01 rna ? GO:0001070 ... P60723 N/A
    791684 8e33:N (2.23) BS01 rna ? GO:0000027 ... P60438 N/A
    791685 8e33:O (2.23) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791686 8e33:P (2.23) BS01 rna ? GO:0002181 ... P61175 N/A
    791687 8e33:Q (2.23) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791688 8e33:R (2.23) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791689 8e35:K (2.27) BS01 rna ? GO:0000027 ... P60422 N/A
    791690 8e35:L (2.27) BS01 rna ? GO:0002181 ... P02413 N/A
    791691 8e35:M (2.27) BS01 rna ? GO:0001070 ... P60723 N/A
    791692 8e35:N (2.27) BS01 rna ? GO:0000027 ... P60438 N/A
    791693 8e35:O (2.27) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791694 8e35:P (2.27) BS01 rna ? GO:0002181 ... P61175 N/A
    791695 8e35:Q (2.27) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791696 8e35:R (2.27) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791697 8e36:K (2.38) BS01 rna ? GO:0000027 ... P60422 N/A
    791698 8e36:L (2.38) BS01 rna ? GO:0002181 ... P02413 N/A
    791699 8e36:M (2.38) BS01 rna ? GO:0001070 ... P60723 N/A
    791700 8e36:N (2.38) BS01 rna ? GO:0000027 ... P60438 N/A
    791701 8e36:O (2.38) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791702 8e36:P (2.38) BS01 rna ? GO:0002181 ... P61175 N/A
    791703 8e36:Q (2.38) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791704 8e36:R (2.38) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791705 8e3d:A (2.62) BS01 dna ? N/A O95365 36626981
    791706 8e3d:A (2.62) BS02 dna ? N/A O95365 36626981
    791707 8e3d:A (2.62) BS03 ZN ? N/A O95365 36626981
    791708 8e3d:A (2.62) BS04 ZN ? N/A O95365 36626981
    791709 8e3d:A (2.62) BS05 ZN ? N/A O95365 36626981
    791710 8e3d:A (2.62) BS06 ZN ? N/A O95365 36626981
    791711 8e3d:B (2.62) BS01 dna ? N/A O95365 36626981
    791712 8e3d:B (2.62) BS02 dna ? N/A O95365 36626981
    791713 8e3d:B (2.62) BS03 ZN ? N/A O95365 36626981
    791714 8e3d:B (2.62) BS04 ZN ? N/A O95365 36626981
    791715 8e3d:B (2.62) BS05 ZN ? N/A O95365 36626981
    791716 8e3d:B (2.62) BS06 ZN ? N/A O95365 36626981
    791717 8e3d:F (2.62) BS01 dna ? N/A O95365 36626981
    791718 8e3d:F (2.62) BS02 dna ? N/A O95365 36626981
    791719 8e3d:F (2.62) BS03 ZN ? N/A O95365 36626981
    791720 8e3d:F (2.62) BS04 ZN ? N/A O95365 36626981
    791721 8e3d:F (2.62) BS05 ZN ? N/A O95365 36626981
    791722 8e3d:F (2.62) BS06 ZN ? N/A O95365 36626981
    791723 8e3e:A (2.99) BS01 dna ? N/A O95365 36626981
    791724 8e3e:A (2.99) BS02 dna ? N/A O95365 36626981
    791725 8e3e:A (2.99) BS03 ZN ? N/A O95365 36626981
    791726 8e3e:A (2.99) BS04 ZN ? N/A O95365 36626981
    791727 8e3e:A (2.99) BS05 ZN ? N/A O95365 36626981
    791728 8e3e:A (2.99) BS06 ZN ? N/A O95365 36626981
    791729 8e3e:B (2.99) BS01 dna ? N/A O95365 36626981
    791730 8e3e:B (2.99) BS02 dna ? N/A O95365 36626981
    791731 8e3e:B (2.99) BS03 ZN ? N/A O95365 36626981
    791732 8e3e:B (2.99) BS04 ZN ? N/A O95365 36626981
    791733 8e3e:B (2.99) BS05 ZN ? N/A O95365 36626981
    791734 8e3e:B (2.99) BS06 ZN ? N/A O95365 36626981
    791735 8e3e:F (2.99) BS01 dna ? N/A O95365 36626981
    791736 8e3e:F (2.99) BS02 dna ? N/A O95365 36626981
    791737 8e3e:F (2.99) BS03 ZN ? N/A O95365 36626981
    791738 8e3e:F (2.99) BS04 ZN ? N/A O95365 36626981
    791739 8e3e:F (2.99) BS05 ZN ? N/A O95365 36626981
    791740 8e3e:F (2.99) BS06 ZN ? N/A O95365 36626981
    791741 8e3f:A (6.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36697824
    791742 8e3f:A (6.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 36697824
    791743 8e3f:A (6.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 36697824
    791744 8e3f:B (6.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791745 8e3f:B (6.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791746 8e3f:B (6.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791747 8e3f:B (6.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791748 8e3f:B (6.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791749 8e3f:B (6.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    791750 8e3f:F (6.5) BS01 dna ? GO:0005515 ... P0AFG0 36697824
    791751 8e3h:a (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791752 8e3h:a (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791753 8e3h:a (6.5) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791754 8e3h:a (6.5) BS04 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791755 8e3h:b (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791756 8e3h:b (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791757 8e3h:b (6.5) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791758 8e3h:b (6.5) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791759 8e3h:c (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791760 8e3h:c (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791761 8e3h:c (6.5) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791762 8e3h:c (6.5) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791763 8e3h:d (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791764 8e3h:d (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791765 8e3h:d (6.5) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791766 8e3h:d (6.5) BS04 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791767 8e3h:e (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791768 8e3h:e (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791769 8e3h:e (6.5) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791770 8e3h:e (6.5) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791771 8e3h:f (6.5) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 36697824
    791772 8e3h:f (6.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791773 8e3h:f (6.5) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 36697824
    791774 8e3h:f (6.5) BS04 BEF 3.6.4.- GO:0003676 ... P0AG30 36697824
    791775 8e3i:B (2.53) BS01 rna ? GO:0031124 ... Q9C0J8 36130077
    791776 8e3i:C (2.53) BS01 rna ? GO:0003676 ... O95639 36130077
    791777 8e3i:C (2.53) BS02 ZN ? GO:0003676 ... O95639 36130077
    791778 8e3i:C (2.53) BS03 ZN ? GO:0003676 ... O95639 36130077
    791779 8e3i:C (2.53) BS04 ZN ? GO:0003676 ... O95639 36130077
    791780 8e3j:A (2.71) BS01 UGO 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791781 8e3j:B (2.71) BS01 UGO 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791782 8e3k:F (1.28) BS01 dna ? GO:0003700 ... P17947 37352101
    791783 8e3k:F (1.28) BS02 dna ? GO:0003700 ... P17947 37352101
    791784 8e3l:K (2.35) BS01 rna ? GO:0000027 ... P60422 N/A
    791785 8e3l:L (2.35) BS01 rna ? GO:0002181 ... P02413 N/A
    791786 8e3l:M (2.35) BS01 rna ? GO:0001070 ... P60723 N/A
    791787 8e3l:N (2.35) BS01 rna ? GO:0000027 ... P60438 N/A
    791788 8e3l:O (2.35) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791789 8e3l:P (2.35) BS01 rna ? GO:0002181 ... P61175 N/A
    791790 8e3l:Q (2.35) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791791 8e3l:R (2.35) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791792 8e3m:K (2.25) BS01 rna ? GO:0000027 ... P60422 N/A
    791793 8e3m:L (2.25) BS01 rna ? GO:0002181 ... P02413 N/A
    791794 8e3m:M (2.25) BS01 rna ? GO:0001070 ... P60723 N/A
    791795 8e3m:N (2.25) BS01 rna ? GO:0000027 ... P60438 N/A
    791796 8e3m:O (2.25) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791797 8e3m:P (2.25) BS01 rna ? GO:0002181 ... P61175 N/A
    791798 8e3m:Q (2.25) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791799 8e3m:R (2.25) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791800 8e3n:A (2.25) BS01 VA0 ? GO:0003677 ... O75469 36848571

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).