SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791801 8e3o:K (1.99) BS01 rna ? GO:0000027 ... P60422 N/A
    791802 8e3o:L (1.99) BS01 rna ? GO:0002181 ... P02413 N/A
    791803 8e3o:M (1.99) BS01 rna ? GO:0001070 ... P60723 N/A
    791804 8e3o:N (1.99) BS01 rna ? GO:0000027 ... P60438 N/A
    791805 8e3o:O (1.99) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791806 8e3o:P (1.99) BS01 rna ? GO:0002181 ... P61175 N/A
    791807 8e3o:Q (1.99) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791808 8e3o:R (1.99) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791809 8e3p:A (2.3) BS01 UF6 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791810 8e3p:B (2.3) BS01 UF6 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791811 8e3q:C (2.68) BS01 ZN ? GO:0003676 ... O95639 36130077
    791812 8e3r:F (1.45) BS01 dna ? GO:0003700 ... P17947 37352101
    791813 8e3r:F (1.45) BS02 dna ? GO:0003700 ... P17947 37352101
    791814 8e3s:A (3.1) BS01 ZN 2.3.2.8 GO:0004057 ... P16639 37076488
    791815 8e3t:A (2.2) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791816 8e3t:A (2.2) BS02 UFF 1.18.6.1 GO:0005524 ... P07328 36445204
    791817 8e3t:B (2.2) BS01 UFF 1.18.6.1 GO:0005524 ... P07329 36445204
    791818 8e3t:B (2.2) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791819 8e3t:B (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791820 8e3t:C (2.2) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791821 8e3t:C (2.2) BS02 UFF 1.18.6.1 GO:0005524 ... P07328 36445204
    791822 8e3t:D (2.2) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791823 8e3t:D (2.2) BS02 UFF 1.18.6.1 GO:0005524 ... P07329 36445204
    791824 8e3t:D (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791825 8e3u:A (1.99) BS01 UFF 1.18.6.1 GO:0005524 ... P07328 36445204
    791826 8e3u:A (1.99) BS02 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791827 8e3u:B (1.99) BS01 UFF 1.18.6.1 GO:0005524 ... P07329 36445204
    791828 8e3u:B (1.99) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791829 8e3u:B (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791830 8e3u:C (1.99) BS01 UFF 1.18.6.1 GO:0005524 ... P07328 36445204
    791831 8e3u:C (1.99) BS02 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791832 8e3u:D (1.99) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791833 8e3u:D (1.99) BS02 UFF 1.18.6.1 GO:0005524 ... P07329 36445204
    791834 8e3u:D (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791835 8e3v:A (2.0) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791836 8e3v:A (2.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 36445204
    791837 8e3v:B (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791838 8e3v:B (2.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 36445204
    791839 8e3v:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791840 8e3v:C (2.0) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 36445204
    791841 8e3v:C (2.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 36445204
    791842 8e3v:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791843 8e3v:D (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    791844 8e3v:D (2.0) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 36445204
    791845 8e3w:B (1.47) BS01 UHI ? N/A O60885 36809538
    791846 8e3x:R (2.3) BS01 peptide ? GO:0004888 ... P41586 36385145
    791847 8e3y:R (2.3) BS01 peptide ? GO:0004888 ... P32241 36385145
    791848 8e3z:R (2.7) BS01 peptide ? GO:0004888 ... P32241 36385145
    791849 8e40:A (3.57) BS01 rna 3.5.4.38 GO:0000932 ... Q7YR23 36598981
    791850 8e40:A (3.57) BS02 rna 3.5.4.38 GO:0000932 ... Q7YR23 36598981
    791851 8e40:A (3.57) BS03 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36598981
    791852 8e40:B (3.57) BS01 rna ? GO:0003723 ... P12504 36598981
    791853 8e41:K (2.13) BS01 rna ? GO:0000027 ... P60422 N/A
    791854 8e41:L (2.13) BS01 rna ? GO:0002181 ... P02413 N/A
    791855 8e41:M (2.13) BS01 rna ? GO:0001070 ... P60723 N/A
    791856 8e41:N (2.13) BS01 rna ? GO:0000027 ... P60438 N/A
    791857 8e41:O (2.13) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791858 8e41:P (2.13) BS01 rna ? GO:0002181 ... P61175 N/A
    791859 8e41:Q (2.13) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791860 8e41:R (2.13) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791861 8e42:K (2.29) BS01 rna ? GO:0000027 ... P60422 N/A
    791862 8e42:L (2.29) BS01 rna ? GO:0002181 ... P02413 N/A
    791863 8e42:M (2.29) BS01 rna ? GO:0001070 ... P60723 N/A
    791864 8e42:N (2.29) BS01 rna ? GO:0000027 ... P60438 N/A
    791865 8e42:O (2.29) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791866 8e42:P (2.29) BS01 rna ? GO:0002181 ... P61175 N/A
    791867 8e42:Q (2.29) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791868 8e42:R (2.29) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791869 8e43:K (2.09) BS01 rna ? GO:0000027 ... P60422 N/A
    791870 8e43:L (2.09) BS01 rna ? GO:0002181 ... P02413 N/A
    791871 8e43:M (2.09) BS01 rna ? GO:0001070 ... P60723 N/A
    791872 8e43:N (2.09) BS01 rna ? GO:0000027 ... P60438 N/A
    791873 8e43:O (2.09) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791874 8e43:P (2.09) BS01 rna ? GO:0002181 ... P61175 N/A
    791875 8e43:Q (2.09) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791876 8e43:R (2.09) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791877 8e44:K (2.53) BS01 rna ? GO:0000027 ... P60422 N/A
    791878 8e44:L (2.53) BS01 rna ? GO:0002181 ... P02413 N/A
    791879 8e44:M (2.53) BS01 rna ? GO:0001070 ... P60723 N/A
    791880 8e44:N (2.53) BS01 rna ? GO:0000027 ... P60438 N/A
    791881 8e44:O (2.53) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791882 8e44:P (2.53) BS01 rna ? GO:0002181 ... P61175 N/A
    791883 8e44:Q (2.53) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791884 8e44:R (2.53) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791885 8e45:K (2.3) BS01 rna ? GO:0000027 ... P60422 N/A
    791886 8e45:L (2.3) BS01 rna ? GO:0002181 ... P02413 N/A
    791887 8e45:M (2.3) BS01 rna ? GO:0001070 ... P60723 N/A
    791888 8e45:N (2.3) BS01 rna ? GO:0000027 ... P60438 N/A
    791889 8e45:O (2.3) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791890 8e45:P (2.3) BS01 rna ? GO:0002181 ... P61175 N/A
    791891 8e45:Q (2.3) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791892 8e45:R (2.3) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791893 8e46:K (2.32) BS01 rna ? GO:0000027 ... P60422 N/A
    791894 8e46:L (2.32) BS01 rna ? GO:0002181 ... P02413 N/A
    791895 8e46:M (2.32) BS01 rna ? GO:0001070 ... P60723 N/A
    791896 8e46:N (2.32) BS01 rna ? GO:0000027 ... P60438 N/A
    791897 8e46:O (2.32) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791898 8e46:P (2.32) BS01 rna ? GO:0002181 ... P61175 N/A
    791899 8e46:Q (2.32) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791900 8e46:R (2.32) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791901 8e47:K (2.32) BS01 rna ? GO:0000027 ... P60422 N/A
    791902 8e47:L (2.32) BS01 rna ? GO:0002181 ... P02413 N/A
    791903 8e47:M (2.32) BS01 rna ? GO:0001070 ... P60723 N/A
    791904 8e47:N (2.32) BS01 rna ? GO:0000027 ... P60438 N/A
    791905 8e47:O (2.32) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791906 8e47:P (2.32) BS01 rna ? GO:0002181 ... P61175 N/A
    791907 8e47:Q (2.32) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791908 8e47:R (2.32) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791909 8e48:K (2.27) BS01 rna ? GO:0000027 ... P60422 N/A
    791910 8e48:L (2.27) BS01 rna ? GO:0002181 ... P02413 N/A
    791911 8e48:M (2.27) BS01 rna ? GO:0001070 ... P60723 N/A
    791912 8e48:N (2.27) BS01 rna ? GO:0000027 ... P60438 N/A
    791913 8e48:O (2.27) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791914 8e48:P (2.27) BS01 rna ? GO:0002181 ... P61175 N/A
    791915 8e48:Q (2.27) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791916 8e48:R (2.27) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791917 8e49:K (2.05) BS01 rna ? GO:0000027 ... P60422 N/A
    791918 8e49:L (2.05) BS01 rna ? GO:0002181 ... P02413 N/A
    791919 8e49:M (2.05) BS01 rna ? GO:0001070 ... P60723 N/A
    791920 8e49:N (2.05) BS01 rna ? GO:0000027 ... P60438 N/A
    791921 8e49:O (2.05) BS01 rna ? GO:0002181 ... P0AA10 N/A
    791922 8e49:P (2.05) BS01 rna ? GO:0002181 ... P61175 N/A
    791923 8e49:Q (2.05) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    791924 8e49:R (2.05) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    791925 8e4a:A (2.034) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 37556556
    791926 8e4a:A (2.034) BS02 UFX 3.5.1.108 GO:0006796 ... P47205 37556556
    791927 8e4f:A (2.47) BS01 NAP 1.5.1.3 GO:0004146 ... J9F199 37104530
    791928 8e4h:F (1.39) BS01 dna ? GO:0003700 ... P17947 37352101
    791929 8e4h:F (1.39) BS02 dna ? GO:0003700 ... P17947 37352101
    791930 8e4i:A (2.2) BS01 UIJ 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791931 8e4i:B (2.2) BS01 UIJ 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791932 8e4k:A (2.2) BS01 UIO 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791933 8e4k:B (2.2) BS01 UIO 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791934 8e4l:A (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    791935 8e4l:A (3.32) BS02 UL9 ? GO:0005216 ... Q8R4D5 36227998
    791936 8e4l:A (3.32) BS03 ULO ? GO:0005216 ... Q8R4D5 36227998
    791937 8e4l:A (3.32) BS04 PIO ? GO:0005216 ... Q8R4D5 36227998
    791938 8e4l:B (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    791939 8e4l:B (3.32) BS02 UL9 ? GO:0005216 ... Q8R4D5 36227998
    791940 8e4l:B (3.32) BS03 ULO ? GO:0005216 ... Q8R4D5 36227998
    791941 8e4l:B (3.32) BS04 PIO ? GO:0005216 ... Q8R4D5 36227998
    791942 8e4l:C (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    791943 8e4l:C (3.32) BS02 UL9 ? GO:0005216 ... Q8R4D5 36227998
    791944 8e4l:C (3.32) BS03 ULO ? GO:0005216 ... Q8R4D5 36227998
    791945 8e4l:C (3.32) BS04 PIO ? GO:0005216 ... Q8R4D5 36227998
    791946 8e4l:D (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    791947 8e4l:D (3.32) BS02 UL9 ? GO:0005216 ... Q8R4D5 36227998
    791948 8e4l:D (3.32) BS03 ULO ? GO:0005216 ... Q8R4D5 36227998
    791949 8e4l:D (3.32) BS04 PIO ? GO:0005216 ... Q8R4D5 36227998
    791950 8e4m:A (3.44) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791951 8e4m:A (3.44) BS02 ULO ? GO:0005216 ... Q8R4D5 36227998
    791952 8e4m:A (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    791953 8e4m:B (3.44) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791954 8e4m:B (3.44) BS02 ULO ? GO:0005216 ... Q8R4D5 36227998
    791955 8e4m:B (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    791956 8e4m:C (3.44) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791957 8e4m:C (3.44) BS02 ULO ? GO:0005216 ... Q8R4D5 36227998
    791958 8e4m:C (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    791959 8e4m:D (3.44) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791960 8e4m:D (3.44) BS02 ULO ? GO:0005216 ... Q8R4D5 36227998
    791961 8e4m:D (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    791962 8e4n:A (3.07) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791963 8e4n:B (3.07) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791964 8e4n:C (3.07) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791965 8e4n:D (3.07) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791966 8e4o:A (3.43) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791967 8e4o:B (3.43) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791968 8e4o:C (3.43) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791969 8e4o:D (3.43) BS01 PIO ? GO:0005216 ... Q8R4D5 36227998
    791970 8e4p:A (3.59) BS01 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791971 8e4p:B (3.59) BS01 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791972 8e4p:C (3.59) BS01 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791973 8e4p:C (3.59) BS02 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791974 8e4p:D (3.59) BS01 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791975 8e4p:D (3.59) BS02 Y01 ? GO:0005216 ... Q8R4D5 36227998
    791976 8e4r:A (1.8) BS01 K36 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36334779
    791977 8e4r:B (1.8) BS01 K36 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36334779
    791978 8e4s:A (2.4) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    791979 8e4s:A (2.4) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    791980 8e4s:A (2.4) BS03 U9U ? GO:0003723 ... C6H0Y9 36603507
    791981 8e4t:A (1.95) BS01 STU 2.7.10.1 GO:0004672 ... A9VBW0 37310965
    791982 8e4t:A (1.95) BS02 STU 2.7.10.1 GO:0004672 ... A9VBW0 37310965
    791983 8e4w:A (2.75) BS01 V2M 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38472113
    791984 8e4w:B (2.75) BS01 V2M 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38472113
    791985 8e4x:A (2.8) BS01 rna 3.5.4.37 GO:0003723 ... P78563 36243986
    791986 8e4x:A (2.8) BS02 rna 3.5.4.37 GO:0003723 ... P78563 36243986
    791987 8e4x:A (2.8) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    791988 8e4x:A (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    791989 8e4x:B (2.8) BS01 rna 3.5.4.37 GO:0003723 ... P78563 36243986
    791990 8e4x:B (2.8) BS02 rna 3.5.4.37 GO:0003723 ... P78563 36243986
    791991 8e4x:B (2.8) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    791992 8e4x:B (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    791993 8e4y:A (3.4) BS01 UKL 2.3.1.15 GO:0001817 ... Q9HCL2 36522428
    791994 8e4z:A (2.37) BS01 UKF 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791995 8e4z:B (2.37) BS01 UKF 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    791996 8e50:A (3.67) BS01 COA 2.3.1.15 GO:0001817 ... Q9HCL2 36522428
    791997 8e50:A (3.67) BS02 NKO 2.3.1.15 GO:0001817 ... Q9HCL2 36522428
    791998 8e51:B (2.594) BS01 CA N/A GO:0005509 ... N/A 36911992
    791999 8e51:B (2.594) BS02 CA N/A GO:0005509 ... N/A 36911992
    792000 8e51:B (2.594) BS03 CA N/A GO:0005509 ... N/A 36911992

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).