SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    793401 8ec6:H (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    793402 8ecc:A (2.44) BS01 dna 2.7.7.86 N/A Q8C6L5 N/A
    793403 8ecc:A (2.44) BS02 dna 2.7.7.86 N/A Q8C6L5 N/A
    793404 8ecc:A (2.44) BS03 dna 2.7.7.86 N/A Q8C6L5 N/A
    793405 8ecc:A (2.44) BS04 dna 2.7.7.86 N/A Q8C6L5 N/A
    793406 8ecc:A (2.44) BS05 ATP 2.7.7.86 N/A Q8C6L5 N/A
    793407 8ecc:A (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    793408 8ecc:A (2.44) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    793409 8ecc:C (2.44) BS01 dna 2.7.7.86 N/A Q8C6L5 N/A
    793410 8ecc:C (2.44) BS02 dna 2.7.7.86 N/A Q8C6L5 N/A
    793411 8ecc:C (2.44) BS03 dna 2.7.7.86 N/A Q8C6L5 N/A
    793412 8ecc:C (2.44) BS04 dna 2.7.7.86 N/A Q8C6L5 N/A
    793413 8ecc:C (2.44) BS05 VWX 2.7.7.86 N/A Q8C6L5 N/A
    793414 8ecc:C (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    793415 8ecc:C (2.44) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    793416 8ecd:A (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    793417 8ecd:B (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    793418 8ecd:C (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    793419 8ecd:D (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    793420 8ece:A (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    793421 8ece:B (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    793422 8ece:C (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    793423 8ece:D (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    793424 8ecf:A (2.736) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    793425 8ecf:B (2.736) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    793426 8ecf:C (2.736) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    793427 8ecf:D (2.736) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    793428 8ecg:A (2.13) BS01 PV9 1.1.1.34 GO:0004420 ... P14891 36137996
    793429 8ech:E (2.05) BS01 peptide ? GO:0005737 ... P52293 N/A
    793430 8ecr:A (1.42) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    793431 8ecr:B (1.42) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    793432 8ecs:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793433 8ecs:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793434 8ecs:A (1.2) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793435 8ecs:A (1.2) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793436 8ecs:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793437 8ecs:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793438 8ecs:B (1.2) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793439 8ecs:B (1.2) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793440 8ect:A (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793441 8ect:A (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793442 8ect:A (1.6) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793443 8ect:A (1.6) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793444 8ect:B (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793445 8ect:B (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793446 8ect:B (1.6) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793447 8ect:B (1.6) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793448 8ecu:A (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793449 8ecu:A (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793450 8ecu:A (1.3) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793451 8ecu:A (1.3) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793452 8ecu:B (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793453 8ecu:B (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793454 8ecu:B (1.3) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793455 8ecu:B (1.3) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793456 8ecw:A (2.25) BS01 X5B 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    793457 8ecw:B (2.25) BS01 X5B 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    793458 8ecy:A (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793459 8ecy:A (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793460 8ecy:B (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793461 8ecy:B (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793462 8ecy:C (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    793463 8ecy:D (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793464 8ecy:D (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793465 8ecy:E (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    793466 8ecy:F (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793467 8ecy:F (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793468 8ecy:G (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    793469 8ecy:H (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793470 8ecy:H (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793471 8ecy:I (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793472 8ecy:I (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793473 8ecy:J (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793474 8ecy:J (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793475 8ecy:K (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    793476 8ecy:L (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793477 8ecy:L (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793478 8ecy:M (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793479 8ecy:M (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793480 8ecy:N (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    793481 8ecy:Q (2.0) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793482 8ecy:Q (2.0) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15103 36289327
    793483 8ed4:A (2.25) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793484 8ed4:A (2.25) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793485 8ed4:A (2.25) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793486 8ed4:B (2.25) BS01 FES ? GO:0051537 ... Q6VAL9 36995233
    793487 8ed4:C (2.25) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793488 8ed4:C (2.25) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793489 8ed4:C (2.25) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793490 8ed4:D (2.25) BS01 FES ? GO:0051537 ... Q6VAL9 36995233
    793491 8ed4:E (2.25) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793492 8ed4:E (2.25) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793493 8ed4:E (2.25) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793494 8ed4:F (2.25) BS01 FES ? GO:0051537 ... Q6VAL9 36995233
    793495 8ed4:G (2.25) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793496 8ed4:G (2.25) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793497 8ed4:G (2.25) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 36995233
    793498 8ed4:H (2.25) BS01 FES ? GO:0051537 ... Q6VAL9 36995233
    793499 8ed4:I (2.25) BS01 HEM ? GO:0009055 ... Q2TV05 36995233
    793500 8ed4:J (2.25) BS01 HEM ? GO:0009055 ... Q2TV05 36995233
    793501 8ed4:K (2.25) BS01 HEC ? GO:0009055 ... Q2TV05 36995233
    793502 8ed4:L (2.25) BS01 HEM ? GO:0009055 ... Q2TV05 36995233
    793503 8ed7:A (3.7) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793504 8ed7:A (3.7) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793505 8ed7:A (3.7) BS03 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793506 8ed7:B (3.7) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793507 8ed7:B (3.7) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793508 8ed7:B (3.7) BS03 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793509 8ed7:C (3.7) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793510 8ed7:C (3.7) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793511 8ed7:C (3.7) BS03 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793512 8ed7:D (3.7) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793513 8ed7:D (3.7) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793514 8ed7:D (3.7) BS03 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793515 8ed8:A (3.2) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793516 8ed8:A (3.2) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793517 8ed8:A (3.2) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793518 8ed8:B (3.2) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793519 8ed8:B (3.2) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793520 8ed8:B (3.2) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793521 8ed8:C (3.2) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793522 8ed8:C (3.2) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793523 8ed8:C (3.2) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793524 8ed8:D (3.2) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793525 8ed8:D (3.2) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793526 8ed8:D (3.2) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793527 8ed9:A (3.4) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793528 8ed9:A (3.4) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793529 8ed9:A (3.4) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793530 8ed9:B (3.4) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793531 8ed9:B (3.4) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793532 8ed9:B (3.4) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793533 8ed9:C (3.4) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793534 8ed9:C (3.4) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793535 8ed9:C (3.4) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793536 8ed9:D (3.4) BS01 peptide ? GO:0005216 ... J9SQF3 36283409
    793537 8ed9:D (3.4) BS02 9Z9 ? GO:0005216 ... J9SQF3 36283409
    793538 8ed9:D (3.4) BS03 PIO ? GO:0005216 ... J9SQF3 36283409
    793539 8edd:A (1.5) BS01 FE 3.1.21.2 GO:0003677 ... Q6GGE2 39655415
    793540 8edd:A (1.5) BS02 FE 3.1.21.2 GO:0003677 ... Q6GGE2 39655415
    793541 8edd:A (1.5) BS03 ZN 3.1.21.2 GO:0003677 ... Q6GGE2 39655415
    793542 8ede:A (1.799) BS01 WEU 3.4.19.12 GO:0002176 ... P09936 38488146
    793543 8ede:B (1.799) BS01 WEU 3.4.19.12 GO:0002176 ... P09936 38488146
    793544 8edg:A (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793545 8edg:A (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793546 8edg:A (4.64) BS03 dna ? GO:0003677 ... Q25438 37491363
    793547 8edg:A (4.64) BS04 dna ? GO:0003677 ... Q25438 37491363
    793548 8edg:A (4.64) BS05 dna ? GO:0003677 ... Q25438 37491363
    793549 8edg:A (4.64) BS06 ZN ? GO:0003677 ... Q25438 37491363
    793550 8edg:C (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793551 8edg:C (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793552 8edg:C (4.64) BS03 dna ? GO:0003677 ... Q25438 37491363
    793553 8edg:C (4.64) BS04 dna ? GO:0003677 ... Q25438 37491363
    793554 8edg:C (4.64) BS05 ZN ? GO:0003677 ... Q25438 37491363
    793555 8edg:E (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793556 8edg:E (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793557 8edg:E (4.64) BS03 dna ? GO:0003677 ... Q25438 37491363
    793558 8edg:E (4.64) BS04 dna ? GO:0003677 ... Q25438 37491363
    793559 8edg:E (4.64) BS05 ZN ? GO:0003677 ... Q25438 37491363
    793560 8edg:G (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793561 8edg:G (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793562 8edg:G (4.64) BS03 dna ? GO:0003677 ... Q25438 37491363
    793563 8edg:G (4.64) BS04 dna ? GO:0003677 ... Q25438 37491363
    793564 8edg:G (4.64) BS05 dna ? GO:0003677 ... Q25438 37491363
    793565 8edg:G (4.64) BS06 ZN ? GO:0003677 ... Q25438 37491363
    793566 8edg:I (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793567 8edg:I (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793568 8edg:I (4.64) BS03 ZN ? GO:0003677 ... Q25438 37491363
    793569 8edg:K (4.64) BS01 dna ? GO:0003677 ... Q25438 37491363
    793570 8edg:K (4.64) BS02 dna ? GO:0003677 ... Q25438 37491363
    793571 8edg:K (4.64) BS03 ZN ? GO:0003677 ... Q25438 37491363
    793572 8edh:A (3.111) BS01 WGK 2.7.11.1 GO:0004672 ... Q9BYP7 36712947
    793573 8edi:A (2.11) BS01 SGN ? N/A Q26261 38363837
    793574 8edi:B (2.11) BS01 SGN ? N/A Q26261 38363837
    793575 8edi:B (2.11) BS02 IDS ? N/A Q26261 38363837
    793576 8edj:A (1.83) BS01 rna 3.5.4.38 GO:0000932 ... Q7YR23 36470880
    793577 8edj:A (1.83) BS02 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36470880
    793578 8edj:A (1.83) BS03 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36470880
    793579 8edk:A (2.5) BS01 CA ? N/A P34710 38363837
    793580 8edw:A (3.6) BS01 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    793581 8edw:A (3.6) BS02 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    793582 8edy:A (1.18) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    793583 8edz:A (2.65) BS01 WFW ? GO:0003723 ... C6H0Y9 N/A
    793584 8edz:A (2.65) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    793585 8edz:A (2.65) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    793586 8ee3:A (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793587 8ee3:A (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793588 8ee3:A (1.55) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793589 8ee3:A (1.55) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793590 8ee3:B (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793591 8ee3:B (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    793592 8ee3:B (1.55) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    793593 8ee3:B (1.55) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 N/A
    793594 8ee4:A (2.6) BS01 ATP N/A GO:0006302 ... N/A 38177683
    793595 8ee4:A (2.6) BS02 ATP N/A GO:0006302 ... N/A 38177683
    793596 8ee4:B (2.6) BS01 ATP N/A GO:0006302 ... N/A 38177683
    793597 8ee4:B (2.6) BS02 ATP N/A GO:0006302 ... N/A 38177683
    793598 8ee4:C (2.6) BS01 ATP N/A GO:0006302 ... N/A 38177683
    793599 8ee4:D (2.6) BS01 ATP N/A GO:0006302 ... N/A 38177683
    793600 8ee4:E (2.6) BS01 ATP N/A GO:0006302 ... N/A 38177683

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).