SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794001 8dk5:F (2.71) BS01 dna ? GO:0000781 ... P62805 37327775
    794002 8dk5:F (2.71) BS02 dna ? GO:0000781 ... P62805 37327775
    794003 8dk5:G (2.71) BS01 dna ? GO:0000786 ... Q16777 37327775
    794004 8dk5:G (2.71) BS02 dna ? GO:0000786 ... Q16777 37327775
    794005 8dk5:H (2.71) BS01 dna ? GO:0000786 ... Q16778 37327775
    794006 8dk5:H (2.71) BS02 dna ? GO:0000786 ... Q16778 37327775
    794007 8dk7:A (2.46) BS01 rna N/A N/A N/A 36413497
    794008 8dk7:B (2.46) BS01 rna N/A N/A N/A 36413497
    794009 8dk7:D (2.46) BS01 rna N/A N/A N/A 36413497
    794010 8dk7:E (2.46) BS01 rna N/A N/A N/A 36413497
    794011 8dk9:A (2.5) BS01 peptide ? GO:0003677 ... G7CIP4 N/A
    794012 8dk9:B (2.5) BS01 peptide ? GO:0003677 ... G7CIP4 N/A
    794013 8dk9:C (2.5) BS01 peptide ? GO:0003677 ... G7CIP4 N/A
    794014 8dk9:D (2.5) BS01 peptide ? GO:0003677 ... G7CIP4 N/A
    794015 8dkb:A (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794016 8dkb:B (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794017 8dkb:C (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794018 8dkb:C (2.58) BS02 SJI ? GO:0006355 ... O95619 36562986
    794019 8dkb:D (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794020 8dkb:D (2.58) BS02 SJI ? GO:0006355 ... O95619 36562986
    794021 8dkb:E (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794022 8dkb:F (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794023 8dkb:F (2.58) BS02 SJI ? GO:0006355 ... O95619 36562986
    794024 8dkb:G (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794025 8dkb:G (2.58) BS02 SJI ? GO:0006355 ... O95619 36562986
    794026 8dkb:H (2.58) BS01 SJI ? GO:0006355 ... O95619 36562986
    794027 8dkg:A (1.85) BS01 NAI 1.5.1.2 GO:0004735 ... P32322 36713721
    794028 8dkg:B (1.85) BS01 NAI 1.5.1.2 GO:0004735 ... P32322 36713721
    794029 8dkg:C (1.85) BS01 NAI 1.5.1.2 GO:0004735 ... P32322 36713721
    794030 8dkg:D (1.85) BS01 NAI 1.5.1.2 GO:0004735 ... P32322 36713721
    794031 8dkg:E (1.85) BS01 NAI 1.5.1.2 GO:0004735 ... P32322 36713721
    794032 8dkm:P (3.39) BS01 IYY ? N/A O60931 36113465
    794033 8dkn:A (1.95) BS01 peptide ? GO:0003677 ... P37231 36179791
    794034 8dkn:A (1.95) BS02 EEY ? GO:0003677 ... P37231 36179791
    794035 8dko:A (1.8) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794036 8dko:A (1.8) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794037 8dko:B (1.8) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794038 8dko:B (1.8) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794039 8dkp:A (1.23) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794040 8dkp:A (1.23) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794041 8dkp:B (1.23) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794042 8dkp:B (1.23) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794043 8dkq:A (1.72) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794044 8dkq:A (1.72) BS02 SJU 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794045 8dkq:B (1.72) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794046 8dkq:B (1.72) BS02 SJU 1.2.1.88
    1.5.5.2
    GO:0003842 ... F7X6I3 36448708
    794047 8dkr:A (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    794048 8dkr:B (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    794049 8dks:A (2.45) BS01 SO9 2.7.11.1 GO:0000287 ... Q9NWZ3 35863718
    794050 8dks:B (2.45) BS01 SO9 2.7.11.1 GO:0000287 ... Q9NWZ3 35863718
    794051 8dkt:A (2.38) BS01 GDP ? GO:0005525 ... P42207 36576069
    794052 8dkt:A (2.38) BS02 GTP ? GO:0005525 ... P42207 36576069
    794053 8dkt:B (2.38) BS01 GDP ? GO:0005525 ... P54359 36576069
    794054 8dkt:B (2.38) BS02 GTP ? GO:0005525 ... P54359 36576069
    794055 8dku:A (3.2) BS01 UBO ? GO:0005515 ... O67181 36064941
    794056 8dku:A (3.2) BS02 UBH ? GO:0005515 ... O67181 36064941
    794057 8dkv:A (1.59) BS01 peptide ? GO:0003677 ... P37231 36179791
    794058 8dkv:A (1.59) BS02 SKL ? GO:0003677 ... P37231 36179791
    794059 8dky:A (1.61) BS01 U90 ? N/A O67181 36064941
    794060 8dky:B (1.61) BS01 U90 ? N/A O67181 36064941
    794061 8dl1:A (2.09) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794062 8dl1:A (2.09) BS02 GLC N/A GO:0005975 ... N/A 37500984
    794063 8dl1:A (2.09) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794064 8dl1:A (2.09) BS04 GLC N/A GO:0005975 ... N/A 37500984
    794065 8dl1:A (2.09) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794066 8dl1:A (2.09) BS06 GLC N/A GO:0005975 ... N/A 37500984
    794067 8dl1:A (2.09) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794068 8dl1:A (2.09) BS08 GLC N/A GO:0005975 ... N/A 37500984
    794069 8dl1:A (2.09) BS09 GLC N/A GO:0005975 ... N/A 37500984
    794070 8dl1:A (2.09) BS10 GLC N/A GO:0005975 ... N/A 37500984
    794071 8dl1:A (2.09) BS11 GLC N/A GO:0005975 ... N/A 37500984
    794072 8dl1:A (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    794073 8dl1:A (2.09) BS13 MN N/A GO:0005975 ... N/A 37500984
    794074 8dl1:B (2.09) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794075 8dl1:B (2.09) BS02 GLC N/A GO:0005975 ... N/A 37500984
    794076 8dl1:B (2.09) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794077 8dl1:B (2.09) BS04 GLC N/A GO:0005975 ... N/A 37500984
    794078 8dl1:B (2.09) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794079 8dl1:B (2.09) BS06 GLC N/A GO:0005975 ... N/A 37500984
    794080 8dl1:B (2.09) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794081 8dl1:B (2.09) BS08 GLC N/A GO:0005975 ... N/A 37500984
    794082 8dl1:B (2.09) BS09 GLC N/A GO:0005975 ... N/A 37500984
    794083 8dl1:B (2.09) BS10 GLC N/A GO:0005975 ... N/A 37500984
    794084 8dl1:B (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    794085 8dl1:B (2.09) BS12 MN N/A GO:0005975 ... N/A 37500984
    794086 8dl1:C (2.09) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794087 8dl1:C (2.09) BS02 GLC N/A GO:0005975 ... N/A 37500984
    794088 8dl1:C (2.09) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794089 8dl1:C (2.09) BS04 GLC N/A GO:0005975 ... N/A 37500984
    794090 8dl1:C (2.09) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794091 8dl1:C (2.09) BS06 GLC N/A GO:0005975 ... N/A 37500984
    794092 8dl1:C (2.09) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794093 8dl1:C (2.09) BS08 GLC N/A GO:0005975 ... N/A 37500984
    794094 8dl1:C (2.09) BS09 GLC N/A GO:0005975 ... N/A 37500984
    794095 8dl1:C (2.09) BS10 GLC N/A GO:0005975 ... N/A 37500984
    794096 8dl1:C (2.09) BS11 GLC N/A GO:0005975 ... N/A 37500984
    794097 8dl1:C (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    794098 8dl1:C (2.09) BS13 MN N/A GO:0005975 ... N/A 37500984
    794099 8dl1:D (2.09) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794100 8dl1:D (2.09) BS02 GLC N/A GO:0005975 ... N/A 37500984
    794101 8dl1:D (2.09) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794102 8dl1:D (2.09) BS04 GLC N/A GO:0005975 ... N/A 37500984
    794103 8dl1:D (2.09) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794104 8dl1:D (2.09) BS06 GLC N/A GO:0005975 ... N/A 37500984
    794105 8dl1:D (2.09) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794106 8dl1:D (2.09) BS08 GLC N/A GO:0005975 ... N/A 37500984
    794107 8dl1:D (2.09) BS09 GLC N/A GO:0005975 ... N/A 37500984
    794108 8dl1:D (2.09) BS10 GLC N/A GO:0005975 ... N/A 37500984
    794109 8dl1:D (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    794110 8dl1:D (2.09) BS12 MN N/A GO:0005975 ... N/A 37500984
    794111 8dl2:A (1.99) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794112 8dl2:A (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    794113 8dl2:A (1.99) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794114 8dl2:A (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    794115 8dl2:A (1.99) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794116 8dl2:A (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    794117 8dl2:A (1.99) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794118 8dl2:A (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    794119 8dl2:A (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    794120 8dl2:B (1.99) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794121 8dl2:B (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    794122 8dl2:B (1.99) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794123 8dl2:B (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    794124 8dl2:B (1.99) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794125 8dl2:B (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    794126 8dl2:B (1.99) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794127 8dl2:B (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    794128 8dl2:B (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    794129 8dl2:C (1.99) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794130 8dl2:C (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    794131 8dl2:C (1.99) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794132 8dl2:C (1.99) BS04 GLC N/A GO:0005975 ... N/A 37500984
    794133 8dl2:C (1.99) BS05 AC1 N/A GO:0005975 ... N/A 37500984
    794134 8dl2:C (1.99) BS06 GLC N/A GO:0005975 ... N/A 37500984
    794135 8dl2:C (1.99) BS07 AC1 N/A GO:0005975 ... N/A 37500984
    794136 8dl2:C (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    794137 8dl2:C (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    794138 8dl2:D (1.99) BS01 GLC N/A GO:0005975 ... N/A 37500984
    794139 8dl2:D (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    794140 8dl2:D (1.99) BS03 GLC N/A GO:0005975 ... N/A 37500984
    794141 8dl2:D (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    794142 8dl2:D (1.99) BS05 GLC N/A GO:0005975 ... N/A 37500984
    794143 8dl2:D (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    794144 8dl2:D (1.99) BS07 GLC N/A GO:0005975 ... N/A 37500984
    794145 8dl2:D (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    794146 8dl2:D (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    794147 8dl3:A (2.26) BS01 QEI 3.2.2.- GO:0005515 ... Q5T6V5 36610787
    794148 8dl3:B (2.26) BS01 QEI 3.2.2.- GO:0005515 ... Q5T6V5 36610787
    794149 8dl4:A (1.91) BS01 HEM 1.14.14.154 GO:0004497 ... P10614 N/A
    794150 8dl4:A (1.91) BS02 SKX 1.14.14.154 GO:0004497 ... P10614 N/A
    794151 8dl4:A (1.91) BS03 BGC 1.14.14.154 GO:0004497 ... P10614 N/A
    794152 8dl6:A (3.0) BS01 CA ? GO:0005381 ... Q9NP59 36648329
    794153 8dl7:A (2.7) BS01 peptide ? GO:0005381 ... Q9NP59 36649314
    794154 8dl8:A (3.0) BS01 CO ? GO:0005381 ... Q9NP59 36649314
    794155 8dl8:A (3.0) BS02 CO ? GO:0005381 ... Q9NP59 36649314
    794156 8dl9:A (1.9) BS01 T4V 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36808989
    794157 8dla:A (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794158 8dla:A (2.66) BS02 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794159 8dla:B (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794160 8dla:C (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794161 8dla:D (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794162 8dla:G (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794163 8dla:G (2.66) BS02 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794164 8dla:I (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794165 8dla:M (2.66) BS01 UER 3.4.21.92 GO:0004176 ... O84712 36463962
    794166 8dlb:A (1.9) BS01 SRU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36808989
    794167 8dle:A (2.3) BS01 PLP 2.3.1.47 GO:0003824 ... P12998 38176024
    794168 8dlf:A (3.23) BS01 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794169 8dlf:A (3.23) BS02 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794170 8dlf:B (3.23) BS01 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794171 8dlf:B (3.23) BS02 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794172 8dlf:C (3.23) BS01 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794173 8dlf:C (3.23) BS02 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794174 8dlf:D (3.23) BS01 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794175 8dlf:D (3.23) BS02 dna 3.1.21.- GO:0003677 ... P03211 36037477
    794176 8dmb:P (3.1) BS01 rna ? GO:0000794 ... Q12306 36224386
    794177 8dmb:P (3.1) BS02 dna ? GO:0000794 ... Q12306 36224386
    794178 8dmb:P (3.1) BS03 dna ? GO:0000794 ... Q12306 36224386
    794179 8dmd:A (2.0) BS01 SVL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36808989
    794180 8dme:A (6.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794181 8dme:A (6.5) BS02 1C6 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794182 8dme:A (6.5) BS03 FMN 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794183 8dme:A (6.5) BS04 FAD 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794184 8dme:B (6.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794185 8dme:B (6.5) BS02 1C6 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794186 8dme:B (6.5) BS03 FMN 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794187 8dme:B (6.5) BS04 FAD 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794188 8dmf:A (4.0) BS01 MG ? GO:0003746 ... Q8A5S1 36472247
    794189 8dmf:A (4.0) BS02 GTP ? GO:0003746 ... Q8A5S1 36472247
    794190 8dmg:A (4.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794191 8dmg:A (4.4) BS02 1C6 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794192 8dmg:A (4.4) BS03 FMN 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794193 8dmg:A (4.4) BS04 FAD 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794194 8dmg:B (4.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794195 8dmg:B (4.4) BS02 1C6 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794196 8dmg:B (4.4) BS03 FMN 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794197 8dmg:B (4.4) BS04 FAD 1.14.14.1
    1.6.2.4
    GO:0003958 ... P14779 N/A
    794198 8dmk:G (3.7) BS01 CA ? N/A P11047 36658135
    794199 8dml:B (2.08) BS01 JN3 ? N/A Q87GI3 36894018
    794200 8dml:B (2.08) BS02 CA ? N/A Q87GI3 36894018

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).