SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794601 8dqt:A (1.31) BS02 U35 2.7.11.1 GO:0004672 ... O15530 37311034
    794602 8dqv:A (1.52) BS01 O 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794603 8dqv:A (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794604 8dqv:A (1.52) BS03 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794605 8dqv:A (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794606 8dqv:B (1.52) BS01 VK3 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794607 8dqv:B (1.52) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794608 8dqv:B (1.52) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794609 8dqv:B (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794610 8dqv:C (1.52) BS01 O 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794611 8dqv:C (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794612 8dqv:C (1.52) BS03 FCO 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794613 8dqv:C (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    794614 8dqv:D (1.52) BS01 VK3 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794615 8dqv:D (1.52) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794616 8dqv:D (1.52) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794617 8dqv:D (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    794618 8dqw:A (2.1) BS01 dna ? GO:0000077 ... P32641 35939393
    794619 8dqw:A (2.1) BS02 dna ? GO:0000077 ... P32641 35939393
    794620 8dqw:A (2.1) BS03 AGS ? GO:0000077 ... P32641 35939393
    794621 8dqw:A (2.1) BS04 MG ? GO:0000077 ... P32641 35939393
    794622 8dqw:B (2.1) BS01 dna ? GO:0000077 ... P40339 35939393
    794623 8dqw:B (2.1) BS02 AGS ? GO:0000077 ... P40339 35939393
    794624 8dqw:C (2.1) BS01 dna ? GO:0000077 ... P38629 35939393
    794625 8dqw:C (2.1) BS02 AGS ? GO:0000077 ... P38629 35939393
    794626 8dqw:C (2.1) BS03 AGS ? GO:0000077 ... P38629 35939393
    794627 8dqw:D (2.1) BS01 dna ? GO:0000076 ... P40348 35939393
    794628 8dqw:D (2.1) BS02 AGS ? GO:0000076 ... P40348 35939393
    794629 8dqw:D (2.1) BS03 AGS ? GO:0000076 ... P40348 35939393
    794630 8dqw:E (2.1) BS01 dna ? GO:0000077 ... P38251 35939393
    794631 8dqw:E (2.1) BS02 AGS ? GO:0000077 ... P38251 35939393
    794632 8dqw:E (2.1) BS03 GDP ? GO:0000077 ... P38251 35939393
    794633 8dqx:A (2.1) BS01 dna ? GO:0000278 ... P38630 35939393
    794634 8dqx:A (2.1) BS02 dna ? GO:0000278 ... P38630 35939393
    794635 8dqx:A (2.1) BS03 dna ? GO:0000278 ... P38630 35939393
    794636 8dqx:A (2.1) BS04 AGS ? GO:0000278 ... P38630 35939393
    794637 8dqx:B (2.1) BS01 dna ? GO:0000077 ... P40339 35939393
    794638 8dqx:B (2.1) BS02 AGS ? GO:0000077 ... P40339 35939393
    794639 8dqx:B (2.1) BS03 AGS ? GO:0000077 ... P40339 35939393
    794640 8dqx:C (2.1) BS01 AGS ? GO:0000077 ... P38629 35939393
    794641 8dqx:C (2.1) BS02 AGS ? GO:0000077 ... P38629 35939393
    794642 8dqx:D (2.1) BS01 AGS ? GO:0000076 ... P40348 35939393
    794643 8dqx:D (2.1) BS02 AGS ? GO:0000076 ... P40348 35939393
    794644 8dqx:E (2.1) BS01 AGS ? GO:0000077 ... P38251 35939393
    794645 8dqx:E (2.1) BS02 GDP ? GO:0000077 ... P38251 35939393
    794646 8dqz:A (2.92) BS01 dna ? GO:0000278 ... P38630 35939393
    794647 8dqz:A (2.92) BS02 dna ? GO:0000278 ... P38630 35939393
    794648 8dqz:A (2.92) BS03 AGS ? GO:0000278 ... P38630 35939393
    794649 8dqz:B (2.92) BS01 dna ? GO:0000077 ... P40339 35939393
    794650 8dqz:B (2.92) BS02 AGS ? GO:0000077 ... P40339 35939393
    794651 8dqz:C (2.92) BS01 dna ? GO:0000077 ... P38629 35939393
    794652 8dqz:C (2.92) BS02 AGS ? GO:0000077 ... P38629 35939393
    794653 8dqz:C (2.92) BS03 MG ? GO:0000077 ... P38629 35939393
    794654 8dqz:C (2.92) BS04 AGS ? GO:0000077 ... P38629 35939393
    794655 8dqz:D (2.92) BS01 AGS ? GO:0000076 ... P40348 35939393
    794656 8dqz:D (2.92) BS02 AGS ? GO:0000076 ... P40348 35939393
    794657 8dqz:E (2.92) BS01 AGS ? GO:0000077 ... P38251 35939393
    794658 8dqz:E (2.92) BS02 GDP ? GO:0000077 ... P38251 35939393
    794659 8dr0:A (2.42) BS01 dna ? GO:0000278 ... P38630 35939393
    794660 8dr0:A (2.42) BS02 dna ? GO:0000278 ... P38630 35939393
    794661 8dr0:A (2.42) BS03 AGS ? GO:0000278 ... P38630 35939393
    794662 8dr0:A (2.42) BS04 MG ? GO:0000278 ... P38630 35939393
    794663 8dr0:B (2.42) BS01 dna ? GO:0000077 ... P40339 35939393
    794664 8dr0:B (2.42) BS02 AGS ? GO:0000077 ... P40339 35939393
    794665 8dr0:B (2.42) BS03 AGS ? GO:0000077 ... P40339 35939393
    794666 8dr0:C (2.42) BS01 dna ? GO:0000077 ... P38629 35939393
    794667 8dr0:C (2.42) BS02 AGS ? GO:0000077 ... P38629 35939393
    794668 8dr0:C (2.42) BS03 AGS ? GO:0000077 ... P38629 35939393
    794669 8dr0:D (2.42) BS01 AGS ? GO:0000076 ... P40348 35939393
    794670 8dr0:D (2.42) BS02 AGS ? GO:0000076 ... P40348 35939393
    794671 8dr0:E (2.42) BS01 AGS ? GO:0000077 ... P38251 35939393
    794672 8dr0:E (2.42) BS02 GDP ? GO:0000077 ... P38251 35939393
    794673 8dr1:A (2.14) BS01 dna ? GO:0000278 ... P38630 35939393
    794674 8dr1:A (2.14) BS02 dna ? GO:0000278 ... P38630 35939393
    794675 8dr1:A (2.14) BS03 dna ? GO:0000278 ... P38630 35939393
    794676 8dr1:A (2.14) BS04 dna ? GO:0000278 ... P38630 35939393
    794677 8dr1:A (2.14) BS05 AGS ? GO:0000278 ... P38630 35939393
    794678 8dr1:B (2.14) BS01 dna ? GO:0000077 ... P40339 35939393
    794679 8dr1:B (2.14) BS02 AGS ? GO:0000077 ... P40339 35939393
    794680 8dr1:B (2.14) BS03 AGS ? GO:0000077 ... P40339 35939393
    794681 8dr1:C (2.14) BS01 dna ? GO:0000077 ... P38629 35939393
    794682 8dr1:C (2.14) BS02 AGS ? GO:0000077 ... P38629 35939393
    794683 8dr1:C (2.14) BS03 AGS ? GO:0000077 ... P38629 35939393
    794684 8dr1:D (2.14) BS01 dna ? GO:0000076 ... P40348 35939393
    794685 8dr1:D (2.14) BS02 AGS ? GO:0000076 ... P40348 35939393
    794686 8dr1:D (2.14) BS03 AGS ? GO:0000076 ... P40348 35939393
    794687 8dr1:E (2.14) BS01 dna ? GO:0000077 ... P38251 35939393
    794688 8dr1:E (2.14) BS02 AGS ? GO:0000077 ... P38251 35939393
    794689 8dr1:E (2.14) BS03 GDP ? GO:0000077 ... P38251 35939393
    794690 8dr2:A (2.81) BS01 TE3 4.2.1.1 GO:0004089 ... Q50940 36655133
    794691 8dr2:A (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794692 8dr2:C (2.81) BS01 TE3 4.2.1.1 GO:0004089 ... Q50940 36655133
    794693 8dr2:C (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794694 8dr2:E (2.81) BS01 TE3 4.2.1.1 GO:0004089 ... Q50940 36655133
    794695 8dr2:E (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794696 8dr2:G (2.81) BS01 TE3 4.2.1.1 GO:0004089 ... Q50940 36655133
    794697 8dr2:G (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794698 8dr3:A (2.2) BS01 dna ? GO:0000278 ... P38630 35939393
    794699 8dr3:A (2.2) BS02 dna ? GO:0000278 ... P38630 35939393
    794700 8dr3:A (2.2) BS03 dna ? GO:0000278 ... P38630 35939393
    794701 8dr3:A (2.2) BS04 dna ? GO:0000278 ... P38630 35939393
    794702 8dr3:A (2.2) BS05 AGS ? GO:0000278 ... P38630 35939393
    794703 8dr3:B (2.2) BS01 dna ? GO:0000077 ... P40339 35939393
    794704 8dr3:B (2.2) BS02 dna ? GO:0000077 ... P40339 35939393
    794705 8dr3:B (2.2) BS03 AGS ? GO:0000077 ... P40339 35939393
    794706 8dr3:B (2.2) BS04 AGS ? GO:0000077 ... P40339 35939393
    794707 8dr3:C (2.2) BS01 dna ? GO:0000077 ... P38629 35939393
    794708 8dr3:C (2.2) BS02 AGS ? GO:0000077 ... P38629 35939393
    794709 8dr3:D (2.2) BS01 dna ? GO:0000076 ... P40348 35939393
    794710 8dr3:D (2.2) BS02 AGS ? GO:0000076 ... P40348 35939393
    794711 8dr3:D (2.2) BS03 AGS ? GO:0000076 ... P40348 35939393
    794712 8dr3:E (2.2) BS01 AGS ? GO:0000077 ... P38251 35939393
    794713 8dr3:E (2.2) BS02 GDP ? GO:0000077 ... P38251 35939393
    794714 8dr4:A (2.45) BS01 dna ? GO:0000278 ... P38630 35939393
    794715 8dr4:A (2.45) BS02 dna ? GO:0000278 ... P38630 35939393
    794716 8dr4:A (2.45) BS03 dna ? GO:0000278 ... P38630 35939393
    794717 8dr4:A (2.45) BS04 dna ? GO:0000278 ... P38630 35939393
    794718 8dr4:A (2.45) BS05 AGS ? GO:0000278 ... P38630 35939393
    794719 8dr4:B (2.45) BS01 dna ? GO:0000077 ... P40339 35939393
    794720 8dr4:B (2.45) BS02 AGS ? GO:0000077 ... P40339 35939393
    794721 8dr4:B (2.45) BS03 AGS ? GO:0000077 ... P40339 35939393
    794722 8dr4:C (2.45) BS01 dna ? GO:0000077 ... P38629 35939393
    794723 8dr4:C (2.45) BS02 AGS ? GO:0000077 ... P38629 35939393
    794724 8dr4:C (2.45) BS03 AGS ? GO:0000077 ... P38629 35939393
    794725 8dr4:D (2.45) BS01 AGS ? GO:0000076 ... P40348 35939393
    794726 8dr4:D (2.45) BS02 AGS ? GO:0000076 ... P40348 35939393
    794727 8dr4:E (2.45) BS01 dna ? GO:0000077 ... P38251 35939393
    794728 8dr4:E (2.45) BS02 AGS ? GO:0000077 ... P38251 35939393
    794729 8dr4:E (2.45) BS03 GDP ? GO:0000077 ... P38251 35939393
    794730 8dr5:A (2.76) BS01 dna ? GO:0000278 ... P38630 35939393
    794731 8dr5:A (2.76) BS02 dna ? GO:0000278 ... P38630 35939393
    794732 8dr5:A (2.76) BS03 dna ? GO:0000278 ... P38630 35939393
    794733 8dr5:A (2.76) BS04 dna ? GO:0000278 ... P38630 35939393
    794734 8dr5:A (2.76) BS05 MG ? GO:0000278 ... P38630 35939393
    794735 8dr5:A (2.76) BS06 AGS ? GO:0000278 ... P38630 35939393
    794736 8dr5:B (2.76) BS01 dna ? GO:0000077 ... P40339 35939393
    794737 8dr5:B (2.76) BS02 AGS ? GO:0000077 ... P40339 35939393
    794738 8dr5:B (2.76) BS03 AGS ? GO:0000077 ... P40339 35939393
    794739 8dr5:C (2.76) BS01 dna ? GO:0000077 ... P38629 35939393
    794740 8dr5:C (2.76) BS02 AGS ? GO:0000077 ... P38629 35939393
    794741 8dr5:D (2.76) BS01 AGS ? GO:0000076 ... P40348 35939393
    794742 8dr5:D (2.76) BS02 AGS ? GO:0000076 ... P40348 35939393
    794743 8dr5:E (2.76) BS01 dna ? GO:0000077 ... P38251 35939393
    794744 8dr5:E (2.76) BS02 AGS ? GO:0000077 ... P38251 35939393
    794745 8dr5:E (2.76) BS03 GDP ? GO:0000077 ... P38251 35939393
    794746 8dr6:A (2.39) BS01 dna ? GO:0000278 ... P38630 35939393
    794747 8dr6:A (2.39) BS02 dna ? GO:0000278 ... P38630 35939393
    794748 8dr6:A (2.39) BS03 dna ? GO:0000278 ... P38630 35939393
    794749 8dr6:A (2.39) BS04 AGS ? GO:0000278 ... P38630 35939393
    794750 8dr6:B (2.39) BS01 dna ? GO:0000077 ... P40339 35939393
    794751 8dr6:B (2.39) BS02 AGS ? GO:0000077 ... P40339 35939393
    794752 8dr6:C (2.39) BS01 dna ? GO:0000077 ... P38629 35939393
    794753 8dr6:C (2.39) BS02 AGS ? GO:0000077 ... P38629 35939393
    794754 8dr6:C (2.39) BS03 AGS ? GO:0000077 ... P38629 35939393
    794755 8dr6:D (2.39) BS01 AGS ? GO:0000076 ... P40348 35939393
    794756 8dr6:D (2.39) BS02 AGS ? GO:0000076 ... P40348 35939393
    794757 8dr6:E (2.39) BS01 AGS ? GO:0000077 ... P38251 35939393
    794758 8dr6:E (2.39) BS02 ADP ? GO:0000077 ... P38251 35939393
    794759 8dr7:A (2.7) BS01 dna ? GO:0000278 ... P38630 35939393
    794760 8dr7:A (2.7) BS02 dna ? GO:0000278 ... P38630 35939393
    794761 8dr7:A (2.7) BS03 dna ? GO:0000278 ... P38630 35939393
    794762 8dr7:A (2.7) BS04 AGS ? GO:0000278 ... P38630 35939393
    794763 8dr7:B (2.7) BS01 dna ? GO:0000077 ... P40339 35939393
    794764 8dr7:B (2.7) BS02 AGS ? GO:0000077 ... P40339 35939393
    794765 8dr7:B (2.7) BS03 AGS ? GO:0000077 ... P40339 35939393
    794766 8dr7:C (2.7) BS01 dna ? GO:0000077 ... P38629 35939393
    794767 8dr7:C (2.7) BS02 AGS ? GO:0000077 ... P38629 35939393
    794768 8dr7:C (2.7) BS03 AGS ? GO:0000077 ... P38629 35939393
    794769 8dr7:D (2.7) BS01 AGS ? GO:0000076 ... P40348 35939393
    794770 8dr7:E (2.7) BS01 AGS ? GO:0000077 ... P38251 35939393
    794771 8dr7:E (2.7) BS02 GDP ? GO:0000077 ... P38251 35939393
    794772 8dr9:A (1.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 N/A
    794773 8dr9:B (1.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 N/A
    794774 8drb:A (2.59) BS01 TBW 4.2.1.1 GO:0004089 ... Q50940 36655133
    794775 8drb:A (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794776 8drb:C (2.59) BS01 TBW 4.2.1.1 GO:0004089 ... Q50940 36655133
    794777 8drb:C (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794778 8drb:E (2.59) BS01 TBW 4.2.1.1 GO:0004089 ... Q50940 36655133
    794779 8drb:E (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794780 8drb:G (2.59) BS01 TBW 4.2.1.1 GO:0004089 ... Q50940 36655133
    794781 8drb:G (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    794782 8drd:A (1.89) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794783 8drd:B (1.89) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794784 8drf:A (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794785 8drf:A (1.7) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    794786 8drj:A (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794787 8drj:C (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794788 8drl:A (1.65) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794789 8drl:A (1.65) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    794790 8drm:A (1.55) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    794791 8drm:A (1.55) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    794792 8drp:A (2.84) BS01 CFF ? GO:0003151 ... P11716 37224245
    794793 8drp:A (2.84) BS02 ATP ? GO:0003151 ... P11716 37224245
    794794 8drp:A (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    794795 8drp:B (2.84) BS01 CFF ? GO:0003151 ... P11716 37224245
    794796 8drp:B (2.84) BS02 ATP ? GO:0003151 ... P11716 37224245
    794797 8drp:B (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    794798 8drp:C (2.84) BS01 CFF ? GO:0003151 ... P11716 37224245
    794799 8drp:C (2.84) BS02 ATP ? GO:0003151 ... P11716 37224245
    794800 8drp:C (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).