SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794601 8ekb:1g (2.7) BS01 rna ? GO:0000049 ... P17291 36546783
    794602 8ekb:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 36546783
    794603 8ekb:1i (2.7) BS01 rna ? GO:0000049 ... P80374 36546783
    794604 8ekb:1i (2.7) BS02 rna ? GO:0000049 ... P80374 36546783
    794605 8ekb:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 36546783
    794606 8ekb:1k (2.7) BS01 rna ? GO:0003735 ... P80376 36546783
    794607 8ekb:1k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    794608 8ekb:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 36546783
    794609 8ekb:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    794610 8ekb:1m (2.7) BS01 rna ? GO:0000049 ... P80377 36546783
    794611 8ekb:1m (2.7) BS02 rna ? GO:0000049 ... P80377 36546783
    794612 8ekb:1m (2.7) BS03 rna ? GO:0000049 ... P80377 36546783
    794613 8ekb:1m (2.7) BS04 MG ? GO:0000049 ... P80377 36546783
    794614 8ekb:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 36546783
    794615 8ekb:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    794616 8ekb:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 36546783
    794617 8ekb:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 36546783
    794618 8ekb:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 36546783
    794619 8ekb:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 36546783
    794620 8ekb:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 36546783
    794621 8ekb:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 36546783
    794622 8ekb:1t (2.7) BS01 rna ? GO:0003723 ... P80380 36546783
    794623 8ekb:1t (2.7) BS02 MG ? GO:0003723 ... P80380 36546783
    794624 8ekb:20 (2.7) BS01 rna ? GO:0003735 ... P60493 36546783
    794625 8ekb:20 (2.7) BS02 rna ? GO:0003735 ... P60493 36546783
    794626 8ekb:21 (2.7) BS01 rna ? GO:0003735 ... P60494 36546783
    794627 8ekb:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 36546783
    794628 8ekb:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 36546783
    794629 8ekb:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 36546783
    794630 8ekb:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 36546783
    794631 8ekb:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 36546783
    794632 8ekb:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 36546783
    794633 8ekb:25 (2.7) BS01 rna ? GO:0003735 ... P80339 36546783
    794634 8ekb:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 36546783
    794635 8ekb:26 (2.7) BS01 rna ? GO:0000049 ... P35871 36546783
    794636 8ekb:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 36546783
    794637 8ekb:27 (2.7) BS01 rna ? GO:0003735 ... P80340 36546783
    794638 8ekb:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 36546783
    794639 8ekb:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 36546783
    794640 8ekb:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 36546783
    794641 8ekb:2D (2.7) BS01 rna ? GO:0002181 ... P60405 36546783
    794642 8ekb:2D (2.7) BS02 rna ? GO:0002181 ... P60405 36546783
    794643 8ekb:2D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    794644 8ekb:2D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    794645 8ekb:2D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    794646 8ekb:2D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    794647 8ekb:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 36546783
    794648 8ekb:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    794649 8ekb:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 36546783
    794650 8ekb:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    794651 8ekb:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    794652 8ekb:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 36546783
    794653 8ekb:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 36546783
    794654 8ekb:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 36546783
    794655 8ekb:2G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    794656 8ekb:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 36546783
    794657 8ekb:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 36546783
    794658 8ekb:2N (2.7) BS01 rna ? GO:0003729 ... P60488 36546783
    794659 8ekb:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 36546783
    794660 8ekb:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 36546783
    794661 8ekb:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 36546783
    794662 8ekb:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 36546783
    794663 8ekb:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 36546783
    794664 8ekb:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 36546783
    794665 8ekb:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 36546783
    794666 8ekb:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 36546783
    794667 8ekb:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 36546783
    794668 8ekb:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 36546783
    794669 8ekb:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 36546783
    794670 8ekb:2T (2.7) BS01 rna ? GO:0003735 ... P60490 36546783
    794671 8ekb:2T (2.7) BS02 rna ? GO:0003735 ... P60490 36546783
    794672 8ekb:2U (2.7) BS01 rna ? GO:0000027 ... P60491 36546783
    794673 8ekb:2U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    794674 8ekb:2V (2.7) BS01 rna ? GO:0003723 ... P60492 36546783
    794675 8ekb:2V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    794676 8ekb:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 36546783
    794677 8ekb:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    794678 8ekb:2X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 36546783
    794679 8ekb:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 36546783
    794680 8ekb:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 36546783
    794681 8ekb:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 36546783
    794682 8ekb:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 36546783
    794683 8ekb:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 36546783
    794684 8ekb:2b (2.7) BS01 rna ? GO:0003735 ... P80371 36546783
    794685 8ekb:2c (2.7) BS01 rna ? GO:0003676 ... P80372 36546783
    794686 8ekb:2d (2.7) BS01 rna ? GO:0003723 ... P80373 36546783
    794687 8ekb:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 36546783
    794688 8ekb:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 36546783
    794689 8ekb:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 36546783
    794690 8ekb:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 36546783
    794691 8ekb:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 36546783
    794692 8ekb:2g (2.7) BS01 rna ? GO:0000049 ... P17291 36546783
    794693 8ekb:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 36546783
    794694 8ekb:2i (2.7) BS01 rna ? GO:0000049 ... P80374 36546783
    794695 8ekb:2i (2.7) BS02 rna ? GO:0000049 ... P80374 36546783
    794696 8ekb:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 36546783
    794697 8ekb:2k (2.7) BS01 rna ? GO:0003735 ... P80376 36546783
    794698 8ekb:2k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    794699 8ekb:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 36546783
    794700 8ekb:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    794701 8ekb:2m (2.7) BS01 rna ? GO:0000049 ... P80377 36546783
    794702 8ekb:2m (2.7) BS02 rna ? GO:0000049 ... P80377 36546783
    794703 8ekb:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 36546783
    794704 8ekb:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    794705 8ekb:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 36546783
    794706 8ekb:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 36546783
    794707 8ekb:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 36546783
    794708 8ekb:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 36546783
    794709 8ekb:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 36546783
    794710 8ekb:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 36546783
    794711 8ekb:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 36546783
    794712 8ekb:2t (2.7) BS01 rna ? GO:0003723 ... P80380 36546783
    794713 8ekc:1 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 36546783
    794714 8ekc:2 (2.7) BS01 rna ? GO:0000027 ... P0AG51 36546783
    794715 8ekc:3 (2.7) BS01 rna ? GO:0002181 ... P0A7M9 36546783
    794716 8ekc:3 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 36546783
    794717 8ekc:4 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 36546783
    794718 8ekc:5 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 36546783
    794719 8ekc:6 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 36546783
    794720 8ekc:7 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 36546783
    794721 8ekc:8 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 36546783
    794722 8ekc:8 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 36546783
    794723 8ekc:C (2.7) BS01 rna ? GO:0000027 ... P60422 36546783
    794724 8ekc:C (2.7) BS02 MG ? GO:0000027 ... P60422 36546783
    794725 8ekc:D (2.7) BS01 rna ? GO:0000027 ... P60438 36546783
    794726 8ekc:D (2.7) BS02 MG ? GO:0000027 ... P60438 36546783
    794727 8ekc:E (2.7) BS01 rna ? GO:0001070 ... P60723 36546783
    794728 8ekc:F (2.7) BS01 rna ? GO:0000027 ... P62399 36546783
    794729 8ekc:F (2.7) BS02 rna ? GO:0000027 ... P62399 36546783
    794730 8ekc:G (2.7) BS01 rna ? GO:0000027 ... P0AG55 36546783
    794731 8ekc:H (2.7) BS01 rna ? GO:0002181 ... P0A7R1 36546783
    794732 8ekc:L (2.7) BS01 rna ? GO:0002181 ... P0AA10 36546783
    794733 8ekc:M (2.7) BS01 rna ? GO:0002181 ... P0ADY3 36546783
    794734 8ekc:M (2.7) BS02 rna ? GO:0002181 ... P0ADY3 36546783
    794735 8ekc:N (2.7) BS01 rna ? GO:0002181 ... P02413 36546783
    794736 8ekc:O (2.7) BS01 rna ? GO:0000027 ... P0ADY7 36546783
    794737 8ekc:O (2.7) BS02 rna ? GO:0000027 ... P0ADY7 36546783
    794738 8ekc:P (2.7) BS01 rna ? GO:0000027 ... P0AG44 36546783
    794739 8ekc:Q (2.7) BS01 rna ? GO:0002181 ... P0C018 36546783
    794740 8ekc:Q (2.7) BS02 rna ? GO:0002181 ... P0C018 36546783
    794741 8ekc:R (2.7) BS01 rna ? GO:0000027 ... P0A7K6 36546783
    794742 8ekc:R (2.7) BS02 rna ? GO:0000027 ... P0A7K6 36546783
    794743 8ekc:S (2.7) BS01 rna ? GO:0000027 ... P0A7L3 36546783
    794744 8ekc:T (2.7) BS01 rna ? GO:0002181 ... P0AG48 36546783
    794745 8ekc:U (2.7) BS01 rna ? GO:0002181 ... P61175 36546783
    794746 8ekc:V (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 36546783
    794747 8ekc:W (2.7) BS01 rna ? GO:0000027 ... P60624 36546783
    794748 8ekc:X (2.7) BS01 rna ? GO:0000027 ... P68919 36546783
    794749 8ekc:Y (2.7) BS01 rna ? GO:0000027 ... P0A7L8 36546783
    794750 8ekc:Z (2.7) BS01 rna ? GO:0000027 ... P0A7M2 36546783
    794751 8ekc:b (2.7) BS01 rna ? GO:0000028 ... P0A7V0 36546783
    794752 8ekc:c (2.7) BS01 rna ? GO:0000028 ... P0A7V3 36546783
    794753 8ekc:d (2.7) BS01 rna ? GO:0000028 ... P0A7V8 36546783
    794754 8ekc:e (2.7) BS01 rna ? GO:0000028 ... P0A7W1 36546783
    794755 8ekc:f (2.7) BS01 rna ? GO:0002181 ... P02358 36546783
    794756 8ekc:g (2.7) BS01 rna ? GO:0003723 ... P02359 36546783
    794757 8ekc:h (2.7) BS01 rna ? GO:0000028 ... P0A7W7 36546783
    794758 8ekc:i (2.7) BS01 rna ? GO:0000049 ... P0A7X3 36546783
    794759 8ekc:i (2.7) BS02 rna ? GO:0000049 ... P0A7X3 36546783
    794760 8ekc:j (2.7) BS01 rna ? GO:0000049 ... P0A7R5 36546783
    794761 8ekc:k (2.7) BS01 rna ? GO:0002181 ... P0A7R9 36546783
    794762 8ekc:l (2.7) BS01 rna ? GO:0000049 ... P0A7S3 36546783
    794763 8ekc:m (2.7) BS01 rna ? GO:0000049 ... P0A7S9 36546783
    794764 8ekc:m (2.7) BS02 rna ? GO:0000049 ... P0A7S9 36546783
    794765 8ekc:n (2.7) BS01 rna ? GO:0000028 ... P0AG59 36546783
    794766 8ekc:o (2.7) BS01 rna ? GO:0000028 ... P0ADZ4 36546783
    794767 8ekc:o (2.7) BS02 rna ? GO:0000028 ... P0ADZ4 36546783
    794768 8ekc:p (2.7) BS01 rna ? GO:0000028 ... P0A7T3 36546783
    794769 8ekc:q (2.7) BS01 rna ? GO:0000028 ... P0AG63 36546783
    794770 8ekc:r (2.7) BS01 rna ? GO:0002181 ... P0A7T7 36546783
    794771 8ekc:s (2.7) BS01 rna ? GO:0000028 ... P0A7U3 36546783
    794772 8ekc:t (2.7) BS01 rna ? GO:0000028 ... P0A7U7 36546783
    794773 8ekc:u (2.7) BS01 rna ? GO:0000028 ... P68679 36546783
    794774 8ekf:HHH (1.9) BS01 peptide N/A N/A N/A 37507365
    794775 8ekf:LLL (1.9) BS01 peptide N/A N/A N/A 37507365
    794776 8ekg:A (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794777 8ekg:A (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794778 8ekg:B (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794779 8ekg:B (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794780 8ekg:B (2.65) BS03 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794781 8ekg:B (2.65) BS04 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794782 8ekg:C (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794783 8ekg:D (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794784 8ekg:E (2.65) BS01 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794785 8ekg:E (2.65) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794786 8ekg:F (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    794787 8ekj:F (1.54) BS01 dna ? GO:0003700 ... P17947 37352101
    794788 8ekj:F (1.54) BS02 dna ? GO:0003700 ... P17947 37352101
    794789 8ekk:A (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794790 8ekk:A (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794791 8ekk:B (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794792 8ekk:B (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794793 8ekk:C (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794794 8ekk:C (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794795 8ekk:D (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794796 8ekk:D (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794797 8ekk:E (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794798 8ekk:E (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794799 8ekk:F (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    794800 8ekk:F (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).