SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    796601 8eub:BJ (2.52) BS01 rna ? GO:0000462 ... O13516 37595043
    796602 8eub:BK (2.52) BS01 rna ? GO:0000054 ... Q08745 37595043
    796603 8eub:BL (2.52) BS01 rna ? GO:0000028 ... P0CX47 37595043
    796604 8eub:BM (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796605 8eub:BN (2.52) BS01 rna ? GO:0000462 ... P05756 37595043
    796606 8eub:BO (2.52) BS01 rna ? GO:0000028 ... P06367 37595043
    796607 8eub:BO (2.52) BS02 rna ? GO:0000028 ... P06367 37595043
    796608 8eub:BP (2.52) BS01 rna ? GO:0003723 ... N/A 37595043
    796609 8eub:BQ (2.52) BS01 rna ? GO:0000462 ... P0CX51 37595043
    796610 8eub:BR (2.52) BS01 rna ? GO:0000028 ... P02407 37595043
    796611 8eub:BS (2.52) BS01 rna ? GO:0000054 ... P0CX55 37595043
    796612 8eub:BT (2.52) BS01 rna ? GO:0000028 ... P07280 37595043
    796613 8eub:BU (2.52) BS01 rna ? GO:0003723 ... N/A 37595043
    796614 8eub:BV (2.52) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    796615 8eub:BW (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796616 8eub:BX (2.52) BS01 rna ? GO:0000462 ... P0CY39 37595043
    796617 8eub:BY (2.52) BS01 rna ? GO:0000462 ... P0CX31 37595043
    796618 8eub:BZ (2.52) BS01 rna ? N/A N/A 37595043
    796619 8eub:BZ (2.52) BS02 rna ? N/A N/A 37595043
    796620 8eub:Ba (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796621 8eub:Bb (2.52) BS01 rna ? GO:0000028 ... P35997 37595043
    796622 8eub:Bc (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796623 8eub:Bd (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796624 8eub:Be (2.52) BS01 rna ? GO:0002181 ... P0CX33 37595043
    796625 8eub:Bf (2.52) BS01 rna ? GO:0003735 ... N/A 37595043
    796626 8eub:Bg (2.52) BS01 rna ? GO:0001965 ... P38011 37595043
    796627 8eub:DC (2.52) BS01 rna 3.6.5.- GO:0003746 ... P32324 37595043
    796628 8eub:DC (2.52) BS02 rna 3.6.5.- GO:0003746 ... P32324 37595043
    796629 8eub:DC (2.52) BS03 rna 3.6.5.- GO:0003746 ... P32324 37595043
    796630 8eub:DC (2.52) BS04 GDP 3.6.5.- GO:0003746 ... P32324 37595043
    796631 8eub:E (2.52) BS01 rna ? GO:0003723 ... N/A 37595043
    796632 8eub:E (2.52) BS02 rna ? GO:0003723 ... N/A 37595043
    796633 8eub:VA (2.52) BS01 rna ? GO:0000027 ... P05317 37595043
    796634 8euc:A (3.61) BS01 PCG ? GO:0005216 ... Q16281 37463923
    796635 8euc:B (3.61) BS01 PCG ? GO:0005216 ... Q16281 37463923
    796636 8euc:C (3.61) BS01 PCG ? GO:0005216 ... Q16281 37463923
    796637 8euc:D (3.61) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    796638 8eud:A (2.37) BS01 WUR 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    796639 8eud:B (2.37) BS01 WUR 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    796640 8eue:A (3.48) BS01 dna ? GO:0000786 ... P84233 37384669
    796641 8eue:A (3.48) BS02 dna ? GO:0000786 ... P84233 37384669
    796642 8eue:B (3.48) BS01 dna ? GO:0000786 ... P62799 37384669
    796643 8eue:B (3.48) BS02 dna ? GO:0000786 ... P62799 37384669
    796644 8eue:C (3.48) BS01 dna ? GO:0000786 ... P06897 37384669
    796645 8eue:C (3.48) BS02 dna ? GO:0000786 ... P06897 37384669
    796646 8eue:D (3.48) BS01 dna ? GO:0000786 ... P02281 37384669
    796647 8eue:D (3.48) BS02 dna ? GO:0000786 ... P02281 37384669
    796648 8eue:E (3.48) BS01 dna ? GO:0000786 ... P84233 37384669
    796649 8eue:E (3.48) BS02 dna ? GO:0000786 ... P84233 37384669
    796650 8eue:F (3.48) BS01 dna ? GO:0000786 ... P62799 37384669
    796651 8eue:F (3.48) BS02 dna ? GO:0000786 ... P62799 37384669
    796652 8eue:H (3.48) BS01 dna ? GO:0000786 ... P02281 37384669
    796653 8eue:H (3.48) BS02 dna ? GO:0000786 ... P02281 37384669
    796654 8eue:K (3.48) BS01 dna N/A N/A N/A 37384669
    796655 8eue:K (3.48) BS02 dna N/A N/A N/A 37384669
    796656 8euf:Q (3.41) BS01 peptide 3.6.4.- GO:0000722 ... P53115 37384669
    796657 8euf:T (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    796658 8euf:U (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    796659 8euf:V (3.41) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    796660 8euf:V (3.41) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    796661 8euf:W (3.41) BS01 peptide 3.6.4.12 GO:0000492 ... Q12464 37384669
    796662 8euf:W (3.41) BS02 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    796663 8euf:X (3.41) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    796664 8euf:X (3.41) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    796665 8euf:Y (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    796666 8eug:3 (2.8) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    796667 8eug:8 (2.8) BS01 rna ? GO:0002181 ... P05767 36423630
    796668 8eug:8 (2.8) BS02 rna ? GO:0002181 ... P05767 36423630
    796669 8eug:A (2.8) BS01 rna ? GO:0002181 ... P0CT70 36423630
    796670 8eug:B (2.8) BS01 rna ? GO:0002181 ... P40372 36423630
    796671 8eug:C (2.8) BS01 rna ? GO:0002181 ... Q9P784 36423630
    796672 8eug:C (2.8) BS02 rna ? GO:0002181 ... Q9P784 36423630
    796673 8eug:D (2.8) BS01 rna ? GO:0000027 ... P52822 36423630
    796674 8eug:D (2.8) BS02 rna ? GO:0000027 ... P52822 36423630
    796675 8eug:E (2.8) BS01 rna ? GO:0002181 ... P79071 36423630
    796676 8eug:F (2.8) BS01 rna ? GO:0000463 ... P25457 36423630
    796677 8eug:F (2.8) BS02 rna ? GO:0000463 ... P25457 36423630
    796678 8eug:G (2.8) BS01 rna ? GO:0000470 ... O13672 36423630
    796679 8eug:G (2.8) BS02 rna ? GO:0000470 ... O13672 36423630
    796680 8eug:H (2.8) BS01 rna ? GO:0002181 ... Q10232 36423630
    796681 8eug:I (2.8) BS01 rna ? GO:0002181 ... Q09127 36423630
    796682 8eug:I (2.8) BS02 rna ? GO:0002181 ... Q09127 36423630
    796683 8eug:J (2.8) BS01 rna ? GO:0002181 ... P0CT77 36423630
    796684 8eug:J (2.8) BS02 rna ? GO:0002181 ... P0CT77 36423630
    796685 8eug:K (2.8) BS01 rna ? GO:0002181 ... Q9HGL8 36423630
    796686 8eug:L (2.8) BS01 rna ? GO:0002181 ... O74175 36423630
    796687 8eug:L (2.8) BS02 rna ? GO:0002181 ... O74175 36423630
    796688 8eug:M (2.8) BS01 rna ? GO:0002181 ... O94238 36423630
    796689 8eug:N (2.8) BS01 rna ? GO:0002181 ... O74895 36423630
    796690 8eug:N (2.8) BS02 rna ? GO:0002181 ... O74895 36423630
    796691 8eug:O (2.8) BS01 rna ? GO:0002181 ... O42991 36423630
    796692 8eug:P (2.8) BS01 rna ? GO:0002181 ... O14339 36423630
    796693 8eug:P (2.8) BS02 rna ? GO:0002181 ... O14339 36423630
    796694 8eug:Q (2.8) BS01 rna ? GO:0002181 ... Q10192 36423630
    796695 8eug:R (2.8) BS01 rna ? GO:0002181 ... P05734 36423630
    796696 8eug:S (2.8) BS01 rna ? GO:0002181 ... P0CT68 36423630
    796697 8eug:S (2.8) BS02 rna ? GO:0002181 ... P0CT68 36423630
    796698 8eug:T (2.8) BS01 rna ? GO:0002181 ... Q9UUC1 36423630
    796699 8eug:T (2.8) BS02 rna ? GO:0002181 ... Q9UUC1 36423630
    796700 8eug:U (2.8) BS01 rna ? GO:0002181 ... Q09668 36423630
    796701 8eug:V (2.8) BS01 rna ? GO:0002181 ... P0CT60 36423630
    796702 8eug:X (2.8) BS01 rna ? GO:0002181 ... Q10330 36423630
    796703 8eug:X (2.8) BS02 rna ? GO:0002181 ... Q10330 36423630
    796704 8eug:Y (2.8) BS01 rna ? GO:0002181 ... P78946 36423630
    796705 8eug:Y (2.8) BS02 rna ? GO:0002181 ... P78946 36423630
    796706 8eug:Z (2.8) BS01 rna ? GO:0002181 ... O14388 36423630
    796707 8eug:a (2.8) BS01 rna ? GO:0002181 ... P36585 36423630
    796708 8eug:b (2.8) BS01 rna ? GO:0002181 ... Q92366 36423630
    796709 8eug:c (2.8) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    796710 8eug:d (2.8) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    796711 8eug:e (2.8) BS01 rna ? GO:0002181 ... P79015 36423630
    796712 8eug:f (2.8) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    796713 8eug:g (2.8) BS01 rna ? GO:0002181 ... O42846 36423630
    796714 8eug:h (2.8) BS01 rna ? GO:0000463 ... O74904 36423630
    796715 8eug:h (2.8) BS02 rna ? GO:0000463 ... O74904 36423630
    796716 8eug:i (2.8) BS01 rna ? GO:0002181 ... O94658 36423630
    796717 8eug:j (2.8) BS01 rna ? GO:0002181 ... P05733 36423630
    796718 8eug:j (2.8) BS02 rna ? GO:0002181 ... P05733 36423630
    796719 8eug:j (2.8) BS03 ZN ? GO:0002181 ... P05733 36423630
    796720 8eug:k (2.8) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    796721 8eug:m (2.8) BS01 rna ? GO:0000463 ... O74399 36423630
    796722 8eug:n (2.8) BS01 rna ? GO:0000463 ... O60164 36423630
    796723 8eug:n (2.8) BS02 rna ? GO:0000463 ... O60164 36423630
    796724 8eug:o (2.8) BS01 rna ? GO:0002181 ... Q9UTI8 36423630
    796725 8eug:u (2.8) BS01 rna ? GO:0003674 ... Q10353 36423630
    796726 8euh:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... P33006 36779970
    796727 8euh:A (2.0) BS02 XGE 1.14.-.- GO:0004497 ... P33006 36779970
    796728 8euh:A (2.0) BS03 XGE 1.14.-.- GO:0004497 ... P33006 36779970
    796729 8eui:3 (3.1) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    796730 8eui:8 (3.1) BS01 rna ? GO:0002181 ... P05767 36423630
    796731 8eui:8 (3.1) BS02 rna ? GO:0002181 ... P05767 36423630
    796732 8eui:A (3.1) BS01 rna ? GO:0002181 ... P0CT70 36423630
    796733 8eui:B (3.1) BS01 rna ? GO:0002181 ... P40372 36423630
    796734 8eui:C (3.1) BS01 rna ? GO:0002181 ... Q9P784 36423630
    796735 8eui:C (3.1) BS02 rna ? GO:0002181 ... Q9P784 36423630
    796736 8eui:D (3.1) BS01 rna ? GO:0000027 ... P52822 36423630
    796737 8eui:D (3.1) BS02 rna ? GO:0000027 ... P52822 36423630
    796738 8eui:E (3.1) BS01 rna ? GO:0002181 ... P79071 36423630
    796739 8eui:F (3.1) BS01 rna ? GO:0000463 ... P25457 36423630
    796740 8eui:F (3.1) BS02 rna ? GO:0000463 ... P25457 36423630
    796741 8eui:G (3.1) BS01 rna ? GO:0000470 ... O13672 36423630
    796742 8eui:G (3.1) BS02 rna ? GO:0000470 ... O13672 36423630
    796743 8eui:H (3.1) BS01 rna ? GO:0002181 ... Q10232 36423630
    796744 8eui:I (3.1) BS01 rna ? GO:0002181 ... Q09127 36423630
    796745 8eui:I (3.1) BS02 rna ? GO:0002181 ... Q09127 36423630
    796746 8eui:J (3.1) BS01 rna ? GO:0002181 ... P0CT77 36423630
    796747 8eui:J (3.1) BS02 rna ? GO:0002181 ... P0CT77 36423630
    796748 8eui:K (3.1) BS01 rna ? GO:0002181 ... Q9HGL8 36423630
    796749 8eui:L (3.1) BS01 rna ? GO:0002181 ... O74175 36423630
    796750 8eui:L (3.1) BS02 rna ? GO:0002181 ... O74175 36423630
    796751 8eui:M (3.1) BS01 rna ? GO:0002181 ... O94238 36423630
    796752 8eui:N (3.1) BS01 rna ? GO:0002181 ... O74895 36423630
    796753 8eui:N (3.1) BS02 rna ? GO:0002181 ... O74895 36423630
    796754 8eui:O (3.1) BS01 rna ? GO:0002181 ... O42991 36423630
    796755 8eui:P (3.1) BS01 rna ? GO:0002181 ... O14339 36423630
    796756 8eui:P (3.1) BS02 rna ? GO:0002181 ... O14339 36423630
    796757 8eui:Q (3.1) BS01 rna ? GO:0002181 ... Q10192 36423630
    796758 8eui:R (3.1) BS01 rna ? GO:0002181 ... P05734 36423630
    796759 8eui:S (3.1) BS01 rna ? GO:0002181 ... P0CT68 36423630
    796760 8eui:S (3.1) BS02 rna ? GO:0002181 ... P0CT68 36423630
    796761 8eui:T (3.1) BS01 rna ? GO:0002181 ... Q9UUC1 36423630
    796762 8eui:T (3.1) BS02 rna ? GO:0002181 ... Q9UUC1 36423630
    796763 8eui:U (3.1) BS01 rna ? GO:0002181 ... Q09668 36423630
    796764 8eui:V (3.1) BS01 rna ? GO:0002181 ... P0CT60 36423630
    796765 8eui:X (3.1) BS01 rna ? GO:0002181 ... Q10330 36423630
    796766 8eui:X (3.1) BS02 rna ? GO:0002181 ... Q10330 36423630
    796767 8eui:Y (3.1) BS01 rna ? GO:0002181 ... P78946 36423630
    796768 8eui:Y (3.1) BS02 rna ? GO:0002181 ... P78946 36423630
    796769 8eui:Z (3.1) BS01 rna ? GO:0002181 ... O14388 36423630
    796770 8eui:a (3.1) BS01 rna ? GO:0002181 ... P36585 36423630
    796771 8eui:b (3.1) BS01 rna ? GO:0002181 ... Q92366 36423630
    796772 8eui:c (3.1) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    796773 8eui:d (3.1) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    796774 8eui:e (3.1) BS01 rna ? GO:0002181 ... P79015 36423630
    796775 8eui:f (3.1) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    796776 8eui:g (3.1) BS01 rna ? GO:0002181 ... O42846 36423630
    796777 8eui:h (3.1) BS01 rna ? GO:0000463 ... O74904 36423630
    796778 8eui:h (3.1) BS02 rna ? GO:0000463 ... O74904 36423630
    796779 8eui:i (3.1) BS01 rna ? GO:0002181 ... O94658 36423630
    796780 8eui:j (3.1) BS01 rna ? GO:0002181 ... P05733 36423630
    796781 8eui:j (3.1) BS02 rna ? GO:0002181 ... P05733 36423630
    796782 8eui:j (3.1) BS03 ZN ? GO:0002181 ... P05733 36423630
    796783 8eui:k (3.1) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    796784 8eui:m (3.1) BS01 rna ? GO:0000463 ... O74399 36423630
    796785 8eui:n (3.1) BS01 rna ? GO:0000463 ... O60164 36423630
    796786 8eui:n (3.1) BS02 rna ? GO:0000463 ... O60164 36423630
    796787 8eui:o (3.1) BS01 rna ? GO:0002181 ... Q9UTI8 36423630
    796788 8eui:u (3.1) BS01 rna ? GO:0003674 ... Q10353 36423630
    796789 8euj:H (3.36) BS01 dna ? GO:0000786 ... P02281 37384669
    796790 8euj:M (3.36) BS01 dna N/A N/A N/A 37384669
    796791 8euj:M (3.36) BS02 dna N/A N/A N/A 37384669
    796792 8euj:O (3.36) BS01 dna N/A N/A N/A 37384669
    796793 8euj:O (3.36) BS02 dna N/A N/A N/A 37384669
    796794 8euj:a (3.36) BS01 dna N/A N/A N/A 37384669
    796795 8euj:a (3.36) BS02 dna N/A N/A N/A 37384669
    796796 8euj:b (3.36) BS01 dna N/A N/A N/A 37384669
    796797 8euj:b (3.36) BS02 dna N/A N/A N/A 37384669
    796798 8euj:f (3.36) BS01 dna N/A N/A N/A 37384669
    796799 8euj:f (3.36) BS02 dna N/A N/A N/A 37384669
    796800 8euj:h (3.36) BS01 dna N/A N/A N/A 37384669

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).