SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798601 8ewc:AD (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    798602 8ewc:AE (2.45) BS01 rna ? GO:0000027 ... Q02326 37595043
    798603 8ewc:AF (2.45) BS01 rna ? GO:0000463 ... P05737 37595043
    798604 8ewc:AF (2.45) BS02 rna ? GO:0000463 ... P05737 37595043
    798605 8ewc:AG (2.45) BS01 rna ? GO:0000470 ... P17076 37595043
    798606 8ewc:AG (2.45) BS02 rna ? GO:0000470 ... P17076 37595043
    798607 8ewc:AH (2.45) BS01 rna ? GO:0002181 ... P05738 37595043
    798608 8ewc:AI (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798609 8ewc:AI (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    798610 8ewc:AJ (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798611 8ewc:AJ (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    798612 8ewc:AL (2.45) BS01 rna ? GO:0002181 ... Q12690 37595043
    798613 8ewc:AL (2.45) BS02 rna ? GO:0002181 ... Q12690 37595043
    798614 8ewc:AM (2.45) BS01 rna ? GO:0000027 ... P36105 37595043
    798615 8ewc:AN (2.45) BS01 rna ? GO:0002181 ... P05748 37595043
    798616 8ewc:AN (2.45) BS02 rna ? GO:0002181 ... P05748 37595043
    798617 8ewc:AN (2.45) BS03 MG ? GO:0002181 ... P05748 37595043
    798618 8ewc:AO (2.45) BS01 rna ? GO:0000470 ... P26784 37595043
    798619 8ewc:AP (2.45) BS01 rna ? GO:0000448 ... P05740 37595043
    798620 8ewc:AP (2.45) BS02 rna ? GO:0000448 ... P05740 37595043
    798621 8ewc:AQ (2.45) BS01 rna ? GO:0002181 ... P0CX49 37595043
    798622 8ewc:AR (2.45) BS01 rna ? GO:0002181 ... P0CX82 37595043
    798623 8ewc:AR (2.45) BS02 rna ? GO:0002181 ... P0CX82 37595043
    798624 8ewc:AS (2.45) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    798625 8ewc:AS (2.45) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    798626 8ewc:AT (2.45) BS01 rna ? GO:0002181 ... Q02753 37595043
    798627 8ewc:AT (2.45) BS02 rna ? GO:0002181 ... Q02753 37595043
    798628 8ewc:AU (2.45) BS01 rna ? GO:0002181 ... P05749 37595043
    798629 8ewc:AV (2.45) BS01 rna ? GO:0002181 ... P0CX41 37595043
    798630 8ewc:AV (2.45) BS02 rna ? GO:0002181 ... P0CX41 37595043
    798631 8ewc:AW (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798632 8ewc:AX (2.45) BS01 rna ? GO:0000027 ... P04456 37595043
    798633 8ewc:AX (2.45) BS02 rna ? GO:0000027 ... P04456 37595043
    798634 8ewc:AY (2.45) BS01 rna ? GO:0002181 ... P05743 37595043
    798635 8ewc:AY (2.45) BS02 rna ? GO:0002181 ... P05743 37595043
    798636 8ewc:AZ (2.45) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    798637 8ewc:Aa (2.45) BS01 rna ? GO:0002181 ... P02406 37595043
    798638 8ewc:Ab (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798639 8ewc:Ac (2.45) BS01 rna ? GO:0002181 ... P14120 37595043
    798640 8ewc:Ad (2.45) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    798641 8ewc:Ae (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798642 8ewc:Ae (2.45) BS02 MG ? GO:0003735 ... N/A 37595043
    798643 8ewc:Af (2.45) BS01 rna ? GO:0000027 ... P05744 37595043
    798644 8ewc:Af (2.45) BS02 MG ? GO:0000027 ... P05744 37595043
    798645 8ewc:Ag (2.45) BS01 rna ? GO:0002181 ... P87262 37595043
    798646 8ewc:Ah (2.45) BS01 rna ? GO:0000463 ... P0CX84 37595043
    798647 8ewc:Ah (2.45) BS02 rna ? GO:0000463 ... P0CX84 37595043
    798648 8ewc:Ai (2.45) BS01 rna ? GO:0002181 ... P05745 37595043
    798649 8ewc:Aj (2.45) BS01 rna ? GO:0000448 ... P49166 37595043
    798650 8ewc:Aj (2.45) BS02 rna ? GO:0000448 ... P49166 37595043
    798651 8ewc:Aj (2.45) BS03 MG ? GO:0000448 ... P49166 37595043
    798652 8ewc:Ak (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798653 8ewc:Al (2.45) BS01 rna ? GO:0002181 ... P04650 37595043
    798654 8ewc:Al (2.45) BS02 rna ? GO:0002181 ... P04650 37595043
    798655 8ewc:Am (2.45) BS01 rna ? GO:0000027 ... P0CH08 37595043
    798656 8ewc:Ao (2.45) BS01 rna ? GO:0002181 ... P0CX27 37595043
    798657 8ewc:Ao (2.45) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    798658 8ewc:Ap (2.45) BS01 rna ? GO:0002181 ... P0CX25 37595043
    798659 8ewc:BA (2.45) BS01 rna ? GO:0000028 ... P32905 37595043
    798660 8ewc:BB (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798661 8ewc:BC (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    798662 8ewc:BD (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    798663 8ewc:BE (2.45) BS01 rna ? GO:0002181 ... P0CX35 37595043
    798664 8ewc:BF (2.45) BS01 rna ? GO:0003723 ... A0A1L4AA68 37595043
    798665 8ewc:BF (2.45) BS02 rna ? GO:0003723 ... A0A1L4AA68 37595043
    798666 8ewc:BG (2.45) BS01 rna ? GO:0000462 ... P0CX37 37595043
    798667 8ewc:BH (2.45) BS01 rna ? GO:0002181 ... P26786 37595043
    798668 8ewc:BI (2.45) BS01 rna ? GO:0000462 ... P0CX39 37595043
    798669 8ewc:BI (2.45) BS02 rna ? GO:0000462 ... P0CX39 37595043
    798670 8ewc:BJ (2.45) BS01 rna ? GO:0000462 ... O13516 37595043
    798671 8ewc:BK (2.45) BS01 rna ? GO:0000054 ... Q08745 37595043
    798672 8ewc:BL (2.45) BS01 rna ? GO:0000028 ... P0CX47 37595043
    798673 8ewc:BM (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798674 8ewc:BN (2.45) BS01 rna ? GO:0000462 ... P05756 37595043
    798675 8ewc:BN (2.45) BS02 rna ? GO:0000462 ... P05756 37595043
    798676 8ewc:BO (2.45) BS01 rna ? GO:0000028 ... P06367 37595043
    798677 8ewc:BP (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    798678 8ewc:BQ (2.45) BS01 rna ? GO:0000462 ... P0CX51 37595043
    798679 8ewc:BR (2.45) BS01 rna ? GO:0000028 ... P02407 37595043
    798680 8ewc:BS (2.45) BS01 rna ? GO:0000054 ... P0CX55 37595043
    798681 8ewc:BT (2.45) BS01 rna ? GO:0000028 ... P07280 37595043
    798682 8ewc:BU (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    798683 8ewc:BV (2.45) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    798684 8ewc:BW (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798685 8ewc:BX (2.45) BS01 rna ? GO:0000462 ... P0CX29 37595043
    798686 8ewc:BY (2.45) BS01 rna ? GO:0000462 ... P0CX31 37595043
    798687 8ewc:BZ (2.45) BS01 rna ? N/A N/A 37595043
    798688 8ewc:BZ (2.45) BS02 rna ? N/A N/A 37595043
    798689 8ewc:Ba (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798690 8ewc:Bb (2.45) BS01 rna ? GO:0000028 ... P35997 37595043
    798691 8ewc:Bc (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798692 8ewc:Bd (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798693 8ewc:Be (2.45) BS01 rna ? GO:0002181 ... P0CX33 37595043
    798694 8ewc:Bf (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    798695 8ewc:Bg (2.45) BS01 rna ? GO:0001965 ... P38011 37595043
    798696 8ewc:E (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    798697 8ewc:E (2.45) BS02 rna ? GO:0003723 ... N/A 37595043
    798698 8ewd:A (2.2) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798699 8ewd:A (2.2) BS02 WZN 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798700 8ewe:A (2.3) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798701 8ewe:A (2.3) BS02 X0E 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798702 8ewg:A (2.9) BS01 rna ? GO:0003723 ... A0A1M6GDI0 37442412
    798703 8ewi:A (3.5) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798704 8ewi:A (3.5) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798705 8ewi:A (3.5) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798706 8ewi:B (3.5) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798707 8ewi:B (3.5) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798708 8ewi:B (3.5) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798709 8ewi:C (3.5) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798710 8ewi:C (3.5) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798711 8ewi:C (3.5) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798712 8ewi:D (3.5) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798713 8ewi:D (3.5) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798714 8ewi:D (3.5) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    798715 8ewl:A (2.35) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798716 8ewl:A (2.35) BS02 X1C 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798717 8ewm:A (2.3) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798718 8ewm:A (2.3) BS02 X1I 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798719 8ewn:A (2.1) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798720 8ewn:A (2.1) BS02 X1O 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798721 8ewo:A (2.47) BS01 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798722 8ewo:A (2.47) BS02 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798723 8ewo:B (2.47) BS01 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798724 8ewo:B (2.47) BS02 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798725 8ewo:C (2.47) BS01 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798726 8ewo:C (2.47) BS02 ZN 3.1.2.6 GO:0004416 ... Q9I2T1 N/A
    798727 8ewp:A (2.4) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798728 8ewp:A (2.4) BS02 X2Q 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798729 8ewq:A (2.25) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798730 8ewq:A (2.25) BS02 X2B 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798731 8ewr:A (2.2) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798732 8ewr:A (2.2) BS02 WZN 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798733 8ews:A (2.15) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798734 8ews:A (2.15) BS02 X2Q 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798735 8ewt:A (2.03) BS01 X3I 3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0006629 ... A0A805Z5R7 N/A
    798736 8ewt:B (2.03) BS01 X3I 3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0006629 ... A0A805Z5R7 N/A
    798737 8ewu:A (1.45) BS01 GDP 1.1.1.271 GO:0000166 ... F2X7A6 36534477
    798738 8ewu:A (1.45) BS02 NDP 1.1.1.271 GO:0000166 ... F2X7A6 36534477
    798739 8ewu:B (1.45) BS01 GDP 1.1.1.271 GO:0000166 ... F2X7A6 36534477
    798740 8ewu:B (1.45) BS02 NDP 1.1.1.271 GO:0000166 ... F2X7A6 36534477
    798741 8ewv:C (3.4) BS01 X5K ? N/A P40337 37919549
    798742 8ewv:D (3.4) BS01 X5K ? N/A O60885 37919549
    798743 8ewv:G (3.4) BS01 X5K ? N/A P40337 37919549
    798744 8ewv:H (3.4) BS01 X5K ? N/A O60885 37919549
    798745 8ewv:K (3.4) BS01 X5K ? N/A P40337 37919549
    798746 8ewv:L (3.4) BS01 X5K ? N/A O60885 37919549
    798747 8ewv:O (3.4) BS01 X5K ? N/A P40337 37919549
    798748 8ewv:P (3.4) BS01 X5K ? N/A O60885 37919549
    798749 8ewv:S (3.4) BS01 X5K ? N/A P40337 37919549
    798750 8ewv:T (3.4) BS01 X5K ? N/A O60885 37919549
    798751 8ewv:W (3.4) BS01 X5K ? N/A P40337 37919549
    798752 8ewv:X (3.4) BS01 X5K ? N/A O60885 37919549
    798753 8ewy:A (5.5) BS01 ADP 2.7.10.2 GO:0004672 ... P52332 36867534
    798754 8ewy:B (5.5) BS01 ADP 2.7.10.2 GO:0004672 ... P52332 36867534
    798755 8ewz:A (1.75) BS01 X0I 3.4.11.- GO:0006508 ... O96935 36634455
    798756 8ewz:A (1.75) BS02 ZN 3.4.11.- GO:0006508 ... O96935 36634455
    798757 8ex0:A (1.85) BS01 AQG 2.7.10.2 GO:0004672 ... O60674 36678572
    798758 8ex1:A (1.5) BS01 AD5 2.7.10.2 GO:0004672 ... O60674 36678572
    798759 8ex2:A (1.9) BS01 Q2Q 2.7.10.2 GO:0004672 ... O60674 36678572
    798760 8ex3:A (1.6) BS01 ZN 3.4.11.- GO:0006508 ... O96935 36634455
    798761 8ex3:A (1.6) BS02 X10 3.4.11.- GO:0006508 ... O96935 36634455
    798762 8ex4:A (2.93) BS01 S1P ? GO:0022857 ... Q8IVW8 37224812
    798763 8ex6:A (3.54) BS01 S1P ? GO:0022857 ... Q8IVW8 37224812
    798764 8ex9:A (2.96) BS01 rna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798765 8ex9:A (2.96) BS02 dna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798766 8ex9:A (2.96) BS03 dna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798767 8exa:A (3.14) BS01 rna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798768 8exa:A (3.14) BS02 dna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798769 8exa:A (3.14) BS03 dna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    798770 8exb:A (2.05) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798771 8exb:A (2.05) BS02 X4E 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 36758158
    798772 8exc:A (1.9) BS01 X2U 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36735827
    798773 8exc:A (1.9) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36735827
    798774 8exg:A (1.99) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36735827
    798775 8exg:A (1.99) BS02 X38 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 36735827
    798776 8exh:A (3.5) BS01 X3D ? N/A P17792 36750723
    798777 8exh:B (3.5) BS01 X3D ? N/A P17792 36750723
    798778 8exh:C (3.5) BS01 X3D ? N/A P17792 36750723
    798779 8exh:D (3.5) BS01 X3D ? N/A P17792 36750723
    798780 8exh:E (3.5) BS01 X3D ? N/A P17792 36750723
    798781 8exh:E (3.5) BS02 X3D ? N/A P17792 36750723
    798782 8exh:F (3.5) BS01 X3D ? N/A P17792 36750723
    798783 8exh:F (3.5) BS02 X3D ? N/A P17792 36750723
    798784 8exh:G (3.5) BS01 X3D ? N/A P17792 36750723
    798785 8exh:H (3.5) BS01 X3D ? N/A P17792 36750723
    798786 8exh:I (3.5) BS01 X3D ? N/A P17792 36750723
    798787 8exh:J (3.5) BS01 X3D ? N/A P17792 36750723
    798788 8exh:K (3.5) BS01 X3D ? N/A P17792 36750723
    798789 8exh:L (3.5) BS01 X3D ? N/A P17792 36750723
    798790 8exh:M (3.5) BS01 X3D ? N/A P17792 36750723
    798791 8exh:N (3.5) BS01 X3D ? N/A P17792 36750723
    798792 8exh:O (3.5) BS01 X3D ? N/A P17792 36750723
    798793 8exh:P (3.5) BS01 X3D ? N/A P17792 36750723
    798794 8exh:Q (3.5) BS01 X3D ? N/A P17792 36750723
    798795 8exh:R (3.5) BS01 X3D ? N/A P17792 36750723
    798796 8exh:S (3.5) BS01 X3D ? N/A P17792 36750723
    798797 8exh:T (3.5) BS01 X3D ? N/A P17792 36750723
    798798 8exh:U (3.5) BS01 X3D ? N/A P17792 36750723
    798799 8exh:V (3.5) BS01 X3D ? N/A P17792 36750723
    798800 8exh:W (3.5) BS01 X3D ? N/A P17792 36750723

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).