SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798601 8ekb:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 36546783
    798602 8ekb:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 36546783
    798603 8ekb:1D (2.7) BS01 rna ? GO:0002181 ... P60405 36546783
    798604 8ekb:1D (2.7) BS02 rna ? GO:0002181 ... P60405 36546783
    798605 8ekb:1D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    798606 8ekb:1D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    798607 8ekb:1D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    798608 8ekb:1D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    798609 8ekb:1D (2.7) BS07 MG ? GO:0002181 ... P60405 36546783
    798610 8ekb:1D (2.7) BS08 MG ? GO:0002181 ... P60405 36546783
    798611 8ekb:1D (2.7) BS09 MG ? GO:0002181 ... P60405 36546783
    798612 8ekb:1D (2.7) BS10 MG ? GO:0002181 ... P60405 36546783
    798613 8ekb:1D (2.7) BS11 MG ? GO:0002181 ... P60405 36546783
    798614 8ekb:1D (2.7) BS12 MG ? GO:0002181 ... P60405 36546783
    798615 8ekb:1D (2.7) BS13 MG ? GO:0002181 ... P60405 36546783
    798616 8ekb:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 36546783
    798617 8ekb:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    798618 8ekb:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 36546783
    798619 8ekb:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 36546783
    798620 8ekb:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 36546783
    798621 8ekb:1E (2.7) BS06 MG ? GO:0003735 ... Q5SHN8 36546783
    798622 8ekb:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 36546783
    798623 8ekb:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    798624 8ekb:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    798625 8ekb:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 36546783
    798626 8ekb:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 36546783
    798627 8ekb:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 36546783
    798628 8ekb:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 36546783
    798629 8ekb:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 36546783
    798630 8ekb:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 36546783
    798631 8ekb:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 36546783
    798632 8ekb:1G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 36546783
    798633 8ekb:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    798634 8ekb:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 36546783
    798635 8ekb:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 36546783
    798636 8ekb:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 36546783
    798637 8ekb:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 36546783
    798638 8ekb:1N (2.7) BS01 rna ? GO:0003729 ... P60488 36546783
    798639 8ekb:1N (2.7) BS02 MG ? GO:0003729 ... P60488 36546783
    798640 8ekb:1N (2.7) BS03 MG ? GO:0003729 ... P60488 36546783
    798641 8ekb:1N (2.7) BS04 MG ? GO:0003729 ... P60488 36546783
    798642 8ekb:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 36546783
    798643 8ekb:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 36546783
    798644 8ekb:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 36546783
    798645 8ekb:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 36546783
    798646 8ekb:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 36546783
    798647 8ekb:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 36546783
    798648 8ekb:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 36546783
    798649 8ekb:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 36546783
    798650 8ekb:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 36546783
    798651 8ekb:1P (2.7) BS07 MG ? GO:0003735 ... Q5SHQ7 36546783
    798652 8ekb:1Q (2.7) BS01 rna ? GO:0003735 ... P60489 36546783
    798653 8ekb:1Q (2.7) BS02 rna ? GO:0003735 ... P60489 36546783
    798654 8ekb:1Q (2.7) BS03 MG ? GO:0003735 ... P60489 36546783
    798655 8ekb:1Q (2.7) BS04 MG ? GO:0003735 ... P60489 36546783
    798656 8ekb:1Q (2.7) BS05 MG ? GO:0003735 ... P60489 36546783
    798657 8ekb:1Q (2.7) BS06 MG ? GO:0003735 ... P60489 36546783
    798658 8ekb:1Q (2.7) BS07 MG ? GO:0003735 ... P60489 36546783
    798659 8ekb:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 36546783
    798660 8ekb:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 36546783
    798661 8ekb:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 36546783
    798662 8ekb:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 36546783
    798663 8ekb:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 36546783
    798664 8ekb:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 36546783
    798665 8ekb:1T (2.7) BS01 rna ? GO:0003735 ... P60490 36546783
    798666 8ekb:1T (2.7) BS02 rna ? GO:0003735 ... P60490 36546783
    798667 8ekb:1T (2.7) BS03 MG ? GO:0003735 ... P60490 36546783
    798668 8ekb:1U (2.7) BS01 rna ? GO:0000027 ... P60491 36546783
    798669 8ekb:1U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    798670 8ekb:1U (2.7) BS03 MG ? GO:0000027 ... P60491 36546783
    798671 8ekb:1U (2.7) BS04 MG ? GO:0000027 ... P60491 36546783
    798672 8ekb:1U (2.7) BS05 MG ? GO:0000027 ... P60491 36546783
    798673 8ekb:1U (2.7) BS06 MG ? GO:0000027 ... P60491 36546783
    798674 8ekb:1U (2.7) BS07 MG ? GO:0000027 ... P60491 36546783
    798675 8ekb:1U (2.7) BS08 MG ? GO:0000027 ... P60491 36546783
    798676 8ekb:1V (2.7) BS01 rna ? GO:0003723 ... P60492 36546783
    798677 8ekb:1V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    798678 8ekb:1V (2.7) BS03 MG ? GO:0003723 ... P60492 36546783
    798679 8ekb:1V (2.7) BS04 MG ? GO:0003723 ... P60492 36546783
    798680 8ekb:1V (2.7) BS05 MG ? GO:0003723 ... P60492 36546783
    798681 8ekb:1V (2.7) BS06 MG ? GO:0003723 ... P60492 36546783
    798682 8ekb:1V (2.7) BS07 MG ? GO:0003723 ... P60492 36546783
    798683 8ekb:1V (2.7) BS08 MG ? GO:0003723 ... P60492 36546783
    798684 8ekb:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 36546783
    798685 8ekb:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    798686 8ekb:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 36546783
    798687 8ekb:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 36546783
    798688 8ekb:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 36546783
    798689 8ekb:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 36546783
    798690 8ekb:1X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 36546783
    798691 8ekb:1X (2.7) BS02 MG ? GO:0003735 ... Q5SHP0 36546783
    798692 8ekb:1X (2.7) BS03 MG ? GO:0003735 ... Q5SHP0 36546783
    798693 8ekb:1X (2.7) BS04 MG ? GO:0003735 ... Q5SHP0 36546783
    798694 8ekb:1X (2.7) BS05 MG ? GO:0003735 ... Q5SHP0 36546783
    798695 8ekb:1X (2.7) BS06 MG ? GO:0003735 ... Q5SHP0 36546783
    798696 8ekb:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 36546783
    798697 8ekb:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 36546783
    798698 8ekb:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 36546783
    798699 8ekb:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 36546783
    798700 8ekb:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 36546783
    798701 8ekb:1b (2.7) BS01 rna ? GO:0003735 ... P80371 36546783
    798702 8ekb:1b (2.7) BS02 MG ? GO:0003735 ... P80371 36546783
    798703 8ekb:1c (2.7) BS01 rna ? GO:0003676 ... P80372 36546783
    798704 8ekb:1d (2.7) BS01 rna ? GO:0003723 ... P80373 36546783
    798705 8ekb:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 36546783
    798706 8ekb:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 36546783
    798707 8ekb:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 36546783
    798708 8ekb:1g (2.7) BS01 rna ? GO:0000049 ... P17291 36546783
    798709 8ekb:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 36546783
    798710 8ekb:1i (2.7) BS01 rna ? GO:0003723 ... P80374 36546783
    798711 8ekb:1i (2.7) BS02 rna ? GO:0003723 ... P80374 36546783
    798712 8ekb:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 36546783
    798713 8ekb:1k (2.7) BS01 rna ? GO:0003735 ... P80376 36546783
    798714 8ekb:1k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    798715 8ekb:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 36546783
    798716 8ekb:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    798717 8ekb:1m (2.7) BS01 rna ? GO:0000049 ... P80377 36546783
    798718 8ekb:1m (2.7) BS02 rna ? GO:0000049 ... P80377 36546783
    798719 8ekb:1m (2.7) BS03 rna ? GO:0000049 ... P80377 36546783
    798720 8ekb:1m (2.7) BS04 MG ? GO:0000049 ... P80377 36546783
    798721 8ekb:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 36546783
    798722 8ekb:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    798723 8ekb:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 36546783
    798724 8ekb:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 36546783
    798725 8ekb:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 36546783
    798726 8ekb:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 36546783
    798727 8ekb:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 36546783
    798728 8ekb:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 36546783
    798729 8ekb:1t (2.7) BS01 rna ? GO:0003723 ... P80380 36546783
    798730 8ekb:1t (2.7) BS02 MG ? GO:0003723 ... P80380 36546783
    798731 8ekb:20 (2.7) BS01 rna ? GO:0003735 ... P60493 36546783
    798732 8ekb:20 (2.7) BS02 rna ? GO:0003735 ... P60493 36546783
    798733 8ekb:21 (2.7) BS01 rna ? GO:0003735 ... P60494 36546783
    798734 8ekb:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 36546783
    798735 8ekb:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 36546783
    798736 8ekb:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 36546783
    798737 8ekb:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 36546783
    798738 8ekb:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 36546783
    798739 8ekb:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 36546783
    798740 8ekb:25 (2.7) BS01 rna ? GO:0003735 ... P80339 36546783
    798741 8ekb:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 36546783
    798742 8ekb:26 (2.7) BS01 rna ? GO:0003735 ... P35871 36546783
    798743 8ekb:26 (2.7) BS02 ZN ? GO:0003735 ... P35871 36546783
    798744 8ekb:27 (2.7) BS01 rna ? GO:0003735 ... P80340 36546783
    798745 8ekb:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 36546783
    798746 8ekb:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 36546783
    798747 8ekb:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 36546783
    798748 8ekb:2D (2.7) BS01 rna ? GO:0002181 ... P60405 36546783
    798749 8ekb:2D (2.7) BS02 rna ? GO:0002181 ... P60405 36546783
    798750 8ekb:2D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    798751 8ekb:2D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    798752 8ekb:2D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    798753 8ekb:2D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    798754 8ekb:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 36546783
    798755 8ekb:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    798756 8ekb:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 36546783
    798757 8ekb:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    798758 8ekb:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    798759 8ekb:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 36546783
    798760 8ekb:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 36546783
    798761 8ekb:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 36546783
    798762 8ekb:2G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    798763 8ekb:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 36546783
    798764 8ekb:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 36546783
    798765 8ekb:2N (2.7) BS01 rna ? GO:0003729 ... P60488 36546783
    798766 8ekb:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 36546783
    798767 8ekb:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 36546783
    798768 8ekb:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 36546783
    798769 8ekb:2Q (2.7) BS01 rna ? GO:0003735 ... P60489 36546783
    798770 8ekb:2Q (2.7) BS02 rna ? GO:0003735 ... P60489 36546783
    798771 8ekb:2Q (2.7) BS03 MG ? GO:0003735 ... P60489 36546783
    798772 8ekb:2Q (2.7) BS04 MG ? GO:0003735 ... P60489 36546783
    798773 8ekb:2Q (2.7) BS05 MG ? GO:0003735 ... P60489 36546783
    798774 8ekb:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 36546783
    798775 8ekb:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 36546783
    798776 8ekb:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 36546783
    798777 8ekb:2T (2.7) BS01 rna ? GO:0003735 ... P60490 36546783
    798778 8ekb:2T (2.7) BS02 rna ? GO:0003735 ... P60490 36546783
    798779 8ekb:2U (2.7) BS01 rna ? GO:0000027 ... P60491 36546783
    798780 8ekb:2U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    798781 8ekb:2V (2.7) BS01 rna ? GO:0003723 ... P60492 36546783
    798782 8ekb:2V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    798783 8ekb:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 36546783
    798784 8ekb:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    798785 8ekb:2X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 36546783
    798786 8ekb:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 36546783
    798787 8ekb:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 36546783
    798788 8ekb:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 36546783
    798789 8ekb:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 36546783
    798790 8ekb:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 36546783
    798791 8ekb:2b (2.7) BS01 rna ? GO:0003735 ... P80371 36546783
    798792 8ekb:2c (2.7) BS01 rna ? GO:0003676 ... P80372 36546783
    798793 8ekb:2d (2.7) BS01 rna ? GO:0003723 ... P80373 36546783
    798794 8ekb:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 36546783
    798795 8ekb:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 36546783
    798796 8ekb:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 36546783
    798797 8ekb:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 36546783
    798798 8ekb:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 36546783
    798799 8ekb:2g (2.7) BS01 rna ? GO:0000049 ... P17291 36546783
    798800 8ekb:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 36546783

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).