SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800001 8ern:A (1.64) BS01 WQK 2.7.11.22 GO:0000082 ... P24941 N/A
    800002 8ero:A (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800003 8ero:A (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800004 8ero:A (3.2) BS03 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800005 8ero:A (3.2) BS04 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800006 8ero:A (3.2) BS05 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800007 8ero:A (3.2) BS06 CDP 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800008 8ero:B (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800009 8ero:B (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800010 8ero:B (3.2) BS03 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800011 8ero:B (3.2) BS04 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800012 8ero:B (3.2) BS05 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800013 8ero:B (3.2) BS06 CDP 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800014 8erp:A (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800015 8erp:A (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800016 8erp:A (3.7) BS03 CDC 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800017 8erp:A (3.7) BS04 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800018 8erp:B (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800019 8erp:B (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800020 8erp:B (3.7) BS03 CDC 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800021 8erp:B (3.7) BS04 LBN 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    800022 8ers:A (1.05) BS01 WQO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 N/A
    800023 8erx:A (2.07) BS01 peptide N/A N/A N/A 36761745
    800024 8es7:G (3.04) BS01 Y01 ? GO:0004888 ... P09693 37100770
    800025 8es7:Y (3.04) BS01 Y01 ? GO:0004888 ... P20963 37100770
    800026 8es8:B (2.65) BS01 peptide N/A N/A N/A 37100770
    800027 8es8:B (2.65) BS02 Y01 N/A N/A N/A 37100770
    800028 8es8:N (2.65) BS01 peptide ? N/A Q861F7 37100770
    800029 8es8:Y (2.65) BS01 Y01 ? GO:0004888 ... P20963 37100770
    800030 8es9:B (3.25) BS01 peptide N/A N/A N/A 37100770
    800031 8es9:B (3.25) BS02 Y01 N/A N/A N/A 37100770
    800032 8es9:N (3.25) BS01 peptide ? N/A Q861F7 37100770
    800033 8es9:Y (3.25) BS01 Y01 ? GO:0004888 ... P20963 37100770
    800034 8esa:A (3.4) BS01 peptide ? GO:0006955 ... P61769
    Q53Z42
    37100770
    800035 8esb:A (3.12) BS01 peptide ? GO:0006955 ... Q53Z42 37100770
    800036 8esc:R (3.1) BS01 ATP ? GO:0000785 ... P80428 36263929
    800037 8ese:Z (1.35) BS01 peptide ? GO:0005515 ... Q9UBQ0 37172566
    800038 8esg:A (2.18) BS01 WSR ? GO:0045302 ... A0A833FHE1 N/A
    800039 8esg:H (2.18) BS01 WSR ? GO:0045302 ... A0A833FHE1 N/A
    800040 8esh:A (2.72) BS01 peptide ? GO:0000139 ... D2KZ37 36761745
    800041 8esi:A (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800042 8esi:B (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800043 8esi:C (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800044 8esi:D (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800045 8esi:E (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800046 8esi:F (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800047 8esi:G (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800048 8esi:H (2.35) BS01 WSR 2.3.1.-
    3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0005515 ... Q9KK62 N/A
    800049 8esk:A (2.9) BS01 RBR ? GO:0004888 ... P02710 37264005
    800050 8esk:A (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    800051 8esk:B (2.9) BS01 RBR ? GO:0003008 ... P02718 37264005
    800052 8esk:D (2.9) BS01 RBR ? GO:0004888 ... P02710 37264005
    800053 8esk:D (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    800054 8esk:E (2.9) BS01 RBR ? GO:0004888 ... P02714 37264005
    800055 8esl:A (3.11) BS01 WSR N/A N/A N/A N/A
    800056 8esl:B (3.11) BS01 WSR N/A N/A N/A N/A
    800057 8esl:C (3.11) BS01 WSR N/A N/A N/A N/A
    800058 8esl:D (3.11) BS01 WSR N/A N/A N/A N/A
    800059 8esm:A (3.2) BS01 WS0 2.3.1.20
    2.3.1.76
    GO:0001523 ... O75907 37248213
    800060 8esm:B (3.2) BS01 WS0 2.3.1.20
    2.3.1.76
    GO:0001523 ... O75907 37248213
    800061 8esq:3 (2.8) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800062 8esq:8 (2.8) BS01 rna ? GO:0002181 ... P05767 36423630
    800063 8esq:8 (2.8) BS02 rna ? GO:0002181 ... P05767 36423630
    800064 8esq:A (2.8) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    800065 8esq:B (2.8) BS01 rna ? GO:0002181 ... P40372 36423630
    800066 8esq:C (2.8) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800067 8esq:C (2.8) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800068 8esq:D (2.8) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800069 8esq:E (2.8) BS01 rna ? GO:0002181 ... P79071 36423630
    800070 8esq:F (2.8) BS01 rna ? GO:0000463 ... P25457 36423630
    800071 8esq:G (2.8) BS01 rna ? GO:0000470 ... O13672 36423630
    800072 8esq:G (2.8) BS02 rna ? GO:0000470 ... O13672 36423630
    800073 8esq:G (2.8) BS03 rna ? GO:0000470 ... O13672 36423630
    800074 8esq:H (2.8) BS01 rna ? GO:0002181 ... Q10232 36423630
    800075 8esq:I (2.8) BS01 rna ? GO:0003682 ... O94288 36423630
    800076 8esq:K (2.8) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800077 8esq:L (2.8) BS01 rna ? GO:0002181 ... O74175 36423630
    800078 8esq:L (2.8) BS02 rna ? GO:0002181 ... O74175 36423630
    800079 8esq:M (2.8) BS01 rna ? GO:0002181 ... O94238 36423630
    800080 8esq:N (2.8) BS01 rna ? GO:0002181 ... O74895 36423630
    800081 8esq:N (2.8) BS02 rna ? GO:0002181 ... O74895 36423630
    800082 8esq:O (2.8) BS01 rna ? GO:0002181 ... O42991 36423630
    800083 8esq:P (2.8) BS01 rna ? GO:0002181 ... O14339 36423630
    800084 8esq:P (2.8) BS02 rna ? GO:0002181 ... O14339 36423630
    800085 8esq:Q (2.8) BS01 rna ? GO:0002181 ... Q10192 36423630
    800086 8esq:R (2.8) BS01 rna ? GO:0002181 ... P05734 36423630
    800087 8esq:S (2.8) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800088 8esq:T (2.8) BS01 rna ? GO:0002181 ... Q9UUC1 36423630
    800089 8esq:U (2.8) BS01 rna ? GO:0002181 ... Q09668 36423630
    800090 8esq:V (2.8) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800091 8esq:W (2.8) BS01 rna ? GO:0000027 ... Q9USZ6 36423630
    800092 8esq:X (2.8) BS01 rna ? GO:0002181 ... Q10330 36423630
    800093 8esq:X (2.8) BS02 rna ? GO:0002181 ... Q10330 36423630
    800094 8esq:Y (2.8) BS01 rna ? GO:0002181 ... P78946 36423630
    800095 8esq:Y (2.8) BS02 rna ? GO:0002181 ... P78946 36423630
    800096 8esq:Z (2.8) BS01 rna ? GO:0002181 ... O14388 36423630
    800097 8esq:a (2.8) BS01 rna ? GO:0002181 ... P36585 36423630
    800098 8esq:b (2.8) BS01 rna ? GO:0000054 ... O94659 36423630
    800099 8esq:c (2.8) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    800100 8esq:d (2.8) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800101 8esq:e (2.8) BS01 rna ? GO:0002181 ... P79015 36423630
    800102 8esq:f (2.8) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800103 8esq:g (2.8) BS01 rna ? GO:0002181 ... O42846 36423630
    800104 8esq:h (2.8) BS01 rna ? GO:0000463 ... O74904 36423630
    800105 8esq:h (2.8) BS02 rna ? GO:0000463 ... O74904 36423630
    800106 8esq:i (2.8) BS01 rna ? GO:0002181 ... O94658 36423630
    800107 8esq:j (2.8) BS01 rna ? GO:0000448 ... P05733 36423630
    800108 8esq:j (2.8) BS02 rna ? GO:0000448 ... P05733 36423630
    800109 8esq:j (2.8) BS03 ZN ? GO:0000448 ... P05733 36423630
    800110 8esq:k (2.8) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    800111 8esq:l (2.8) BS01 rna ? GO:0003723 ... Q1MTQ9 36423630
    800112 8esq:m (2.8) BS01 rna ? GO:0000463 ... O74399 36423630
    800113 8esq:n (2.8) BS01 rna ? GO:0000463 ... O60164 36423630
    800114 8esq:n (2.8) BS02 rna ? GO:0000463 ... O60164 36423630
    800115 8esq:o (2.8) BS01 rna ? GO:0003676 ... O74978 36423630
    800116 8esq:q (2.8) BS01 rna 2.1.1.- GO:0000470 ... O94268 36423630
    800117 8esq:r (2.8) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    800118 8esq:s (2.8) BS01 rna ? GO:0003924 ... O74791 36423630
    800119 8esq:t (2.8) BS01 rna ? GO:0000463 ... P17937 36423630
    800120 8esq:t (2.8) BS02 rna ? GO:0000463 ... P17937 36423630
    800121 8esq:t (2.8) BS03 rna ? GO:0000463 ... P17937 36423630
    800122 8esq:u (2.8) BS01 rna ? GO:0003735 ... Q10353 36423630
    800123 8esq:v (2.8) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800124 8esq:v (2.8) BS02 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800125 8esq:w (2.8) BS01 rna 2.1.1.- GO:0000451 ... O42832 36423630
    800126 8esq:w (2.8) BS02 rna 2.1.1.- GO:0000451 ... O42832 36423630
    800127 8esq:x (2.8) BS01 rna ? GO:0000460 ... O14180 36423630
    800128 8esq:y (2.8) BS01 rna ? GO:0000054 ... O94476 36423630
    800129 8esq:z (2.8) BS01 rna ? GO:0003674 ... Q96WW3 36423630
    800130 8esr:A (3.2) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    800131 8esr:B (3.2) BS01 rna ? GO:0002181 ... P40372 36423630
    800132 8esr:C (3.2) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800133 8esr:C (3.2) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800134 8esr:D (3.2) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800135 8esr:E (3.2) BS01 rna ? GO:0002181 ... P79071 36423630
    800136 8esr:F (3.2) BS01 rna ? GO:0000463 ... P25457 36423630
    800137 8esr:F (3.2) BS02 peptide ? GO:0000463 ... P25457 36423630
    800138 8esr:G (3.2) BS01 rna ? GO:0000470 ... O13672 36423630
    800139 8esr:G (3.2) BS02 rna ? GO:0000470 ... O13672 36423630
    800140 8esr:G (3.2) BS03 rna ? GO:0000470 ... O13672 36423630
    800141 8esr:H (3.2) BS01 rna ? GO:0002181 ... Q10232 36423630
    800142 8esr:K (3.2) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800143 8esr:L (3.2) BS01 rna ? GO:0002181 ... O74175 36423630
    800144 8esr:L (3.2) BS02 rna ? GO:0002181 ... O74175 36423630
    800145 8esr:M (3.2) BS01 rna ? GO:0002181 ... O94238 36423630
    800146 8esr:N (3.2) BS01 rna ? GO:0002181 ... O74895 36423630
    800147 8esr:N (3.2) BS02 rna ? GO:0002181 ... O74895 36423630
    800148 8esr:O (3.2) BS01 rna ? GO:0002181 ... O42991 36423630
    800149 8esr:P (3.2) BS01 rna ? GO:0002181 ... O14339 36423630
    800150 8esr:P (3.2) BS02 rna ? GO:0002181 ... O14339 36423630
    800151 8esr:Q (3.2) BS01 rna ? GO:0002181 ... Q10192 36423630
    800152 8esr:R (3.2) BS01 rna ? GO:0002181 ... P05734 36423630
    800153 8esr:S (3.2) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800154 8esr:S (3.2) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800155 8esr:U (3.2) BS01 rna ? GO:0002181 ... Q09668 36423630
    800156 8esr:V (3.2) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800157 8esr:W (3.2) BS01 rna ? GO:0000027 ... Q9USZ6 36423630
    800158 8esr:X (3.2) BS01 rna ? GO:0002181 ... Q10330 36423630
    800159 8esr:X (3.2) BS02 rna ? GO:0002181 ... Q10330 36423630
    800160 8esr:X (3.2) BS03 peptide ? GO:0002181 ... Q10330 36423630
    800161 8esr:Y (3.2) BS01 rna ? GO:0002181 ... P78946 36423630
    800162 8esr:Y (3.2) BS02 rna ? GO:0002181 ... P78946 36423630
    800163 8esr:Z (3.2) BS01 rna ? GO:0002181 ... O14388 36423630
    800164 8esr:a (3.2) BS01 rna ? GO:0002181 ... P36585 36423630
    800165 8esr:b (3.2) BS01 rna ? GO:0000054 ... O94659 36423630
    800166 8esr:c (3.2) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    800167 8esr:d (3.2) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800168 8esr:e (3.2) BS01 rna ? GO:0002181 ... P79015 36423630
    800169 8esr:f (3.2) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800170 8esr:g (3.2) BS01 rna ? GO:0002181 ... O42846 36423630
    800171 8esr:h (3.2) BS01 rna ? GO:0000463 ... O74904 36423630
    800172 8esr:h (3.2) BS02 rna ? GO:0000463 ... O74904 36423630
    800173 8esr:i (3.2) BS01 rna ? GO:0002181 ... O94658 36423630
    800174 8esr:j (3.2) BS01 rna ? GO:0000448 ... P05733 36423630
    800175 8esr:j (3.2) BS02 rna ? GO:0000448 ... P05733 36423630
    800176 8esr:j (3.2) BS03 ZN ? GO:0000448 ... P05733 36423630
    800177 8esr:k (3.2) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    800178 8esr:l (3.2) BS01 rna ? GO:0003723 ... Q1MTQ9 36423630
    800179 8esr:m (3.2) BS01 rna ? GO:0000463 ... O74399 36423630
    800180 8esr:n (3.2) BS01 rna ? GO:0000463 ... O60164 36423630
    800181 8esr:n (3.2) BS02 rna ? GO:0000463 ... O60164 36423630
    800182 8esr:o (3.2) BS01 rna ? GO:0003676 ... O74978 36423630
    800183 8esr:q (3.2) BS01 rna 2.1.1.- GO:0000470 ... O94268 36423630
    800184 8esr:r (3.2) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    800185 8esr:t (3.2) BS01 rna ? GO:0000463 ... P17937 36423630
    800186 8esr:t (3.2) BS02 rna ? GO:0000463 ... P17937 36423630
    800187 8esr:t (3.2) BS03 rna ? GO:0000463 ... P17937 36423630
    800188 8esr:u (3.2) BS01 rna ? GO:0003735 ... Q10353 36423630
    800189 8esr:v (3.2) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800190 8esr:v (3.2) BS02 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800191 8esr:w (3.2) BS01 rna 2.1.1.- GO:0000451 ... O42832 36423630
    800192 8esr:z (3.2) BS01 rna ? GO:0003674 ... Q96WW3 36423630
    800193 8ess:A (1.4) BS01 WRK 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 38042860
    800194 8est:E (1.78) BS01 CA 3.4.21.36 GO:0004252 ... P00772 2337582
    800195 8est:E (1.78) BS02 GIS 3.4.21.36 GO:0004252 ... P00772 2337582
    800196 8esu:A (1.04) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 38042860
    800197 8esv:A (3.3) BS01 CA 3.4.24.81 GO:0004222 ... O14672 37516108
    800198 8esv:A (3.3) BS02 ZN 3.4.24.81 GO:0004222 ... O14672 37516108
    800199 8esv:A (3.3) BS03 BAT 3.4.24.81 GO:0004222 ... O14672 37516108
    800200 8esv:B (3.3) BS01 Y01 ? GO:0005515 ... O95858 37516108

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).