SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800401 8eth:D (3.8) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800402 8eth:E (3.8) BS01 rna ? GO:0002181 ... P79071 36423630
    800403 8eth:F (3.8) BS01 rna ? GO:0000463 ... P25457 36423630
    800404 8eth:F (3.8) BS02 peptide ? GO:0000463 ... P25457 36423630
    800405 8eth:G (3.8) BS01 rna ? GO:0000470 ... O13672 36423630
    800406 8eth:G (3.8) BS02 rna ? GO:0000470 ... O13672 36423630
    800407 8eth:G (3.8) BS03 rna ? GO:0000470 ... O13672 36423630
    800408 8eth:H (3.8) BS01 rna ? GO:0002181 ... Q10232 36423630
    800409 8eth:K (3.8) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800410 8eth:L (3.8) BS01 rna ? GO:0002181 ... O74175 36423630
    800411 8eth:L (3.8) BS02 rna ? GO:0002181 ... O74175 36423630
    800412 8eth:M (3.8) BS01 rna ? GO:0002181 ... O94238 36423630
    800413 8eth:N (3.8) BS01 rna ? GO:0002181 ... O74895 36423630
    800414 8eth:N (3.8) BS02 rna ? GO:0002181 ... O74895 36423630
    800415 8eth:O (3.8) BS01 rna ? GO:0002181 ... O42991 36423630
    800416 8eth:P (3.8) BS01 rna ? GO:0002181 ... O14339 36423630
    800417 8eth:P (3.8) BS02 rna ? GO:0002181 ... O14339 36423630
    800418 8eth:Q (3.8) BS01 rna ? GO:0002181 ... Q10192 36423630
    800419 8eth:S (3.8) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800420 8eth:S (3.8) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800421 8eth:Y (3.8) BS01 rna ? GO:0002181 ... P78946 36423630
    800422 8eth:Y (3.8) BS02 rna ? GO:0002181 ... P78946 36423630
    800423 8eth:e (3.8) BS01 rna ? GO:0002181 ... P79015 36423630
    800424 8eth:f (3.8) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800425 8eth:h (3.8) BS01 rna ? GO:0000463 ... O74904 36423630
    800426 8eth:h (3.8) BS02 rna ? GO:0000463 ... O74904 36423630
    800427 8eth:i (3.8) BS01 rna ? GO:0002181 ... O94658 36423630
    800428 8eth:j (3.8) BS01 rna ? GO:0000448 ... P05733 36423630
    800429 8eth:j (3.8) BS02 rna ? GO:0000448 ... P05733 36423630
    800430 8eth:j (3.8) BS03 ZN ? GO:0000448 ... P05733 36423630
    800431 8eth:m (3.8) BS01 rna ? GO:0000463 ... O74399 36423630
    800432 8eth:o (3.8) BS01 rna ? GO:0003676 ... O74978 36423630
    800433 8eth:t (3.8) BS01 rna ? GO:0000463 ... P17937 36423630
    800434 8eth:u (3.8) BS01 rna ? GO:0003735 ... Q10353 36423630
    800435 8eth:v (3.8) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800436 8eth:v (3.8) BS02 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800437 8eth:x (3.8) BS01 rna ? GO:0000460 ... O14180 36423630
    800438 8eth:x (3.8) BS02 rna ? GO:0000460 ... O14180 36423630
    800439 8eti:3 (3.7) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800440 8eti:4 (3.7) BS01 rna ? GO:0003674 ... Q9Y7M6 36423630
    800441 8eti:5 (3.7) BS01 rna ? GO:0003674 ... O94698 36423630
    800442 8eti:A (3.7) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    800443 8eti:B (3.7) BS01 rna ? GO:0002181 ... P40372 36423630
    800444 8eti:C (3.7) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800445 8eti:C (3.7) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800446 8eti:D (3.7) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800447 8eti:E (3.7) BS01 rna ? GO:0002181 ... P79071 36423630
    800448 8eti:F (3.7) BS01 rna ? GO:0000463 ... P25457 36423630
    800449 8eti:F (3.7) BS02 peptide ? GO:0000463 ... P25457 36423630
    800450 8eti:G (3.7) BS01 rna ? GO:0000470 ... O13672 36423630
    800451 8eti:G (3.7) BS02 rna ? GO:0000470 ... O13672 36423630
    800452 8eti:H (3.7) BS01 rna ? GO:0002181 ... Q10232 36423630
    800453 8eti:K (3.7) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800454 8eti:L (3.7) BS01 rna ? GO:0002181 ... O74175 36423630
    800455 8eti:M (3.7) BS01 rna ? GO:0002181 ... O94238 36423630
    800456 8eti:N (3.7) BS01 rna ? GO:0002181 ... O74895 36423630
    800457 8eti:N (3.7) BS02 rna ? GO:0002181 ... O74895 36423630
    800458 8eti:O (3.7) BS01 rna ? GO:0002181 ... O42991 36423630
    800459 8eti:P (3.7) BS01 rna ? GO:0002181 ... O14339 36423630
    800460 8eti:P (3.7) BS02 rna ? GO:0002181 ... O14339 36423630
    800461 8eti:Q (3.7) BS01 rna ? GO:0002181 ... Q10192 36423630
    800462 8eti:S (3.7) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800463 8eti:S (3.7) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800464 8eti:V (3.7) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800465 8eti:W (3.7) BS01 rna ? GO:0000027 ... Q9USZ6 36423630
    800466 8eti:X (3.7) BS01 rna ? GO:0002181 ... Q10330 36423630
    800467 8eti:X (3.7) BS02 rna ? GO:0002181 ... Q10330 36423630
    800468 8eti:Y (3.7) BS01 rna ? GO:0002181 ... P78946 36423630
    800469 8eti:Y (3.7) BS02 rna ? GO:0002181 ... P78946 36423630
    800470 8eti:b (3.7) BS01 rna ? GO:0000054 ... O94659 36423630
    800471 8eti:d (3.7) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800472 8eti:e (3.7) BS01 rna ? GO:0002181 ... P79015 36423630
    800473 8eti:f (3.7) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800474 8eti:h (3.7) BS01 rna ? GO:0000463 ... O74904 36423630
    800475 8eti:h (3.7) BS02 rna ? GO:0000463 ... O74904 36423630
    800476 8eti:i (3.7) BS01 rna ? GO:0002181 ... O94658 36423630
    800477 8eti:j (3.7) BS01 rna ? GO:0000448 ... P05733 36423630
    800478 8eti:j (3.7) BS02 rna ? GO:0000448 ... P05733 36423630
    800479 8eti:j (3.7) BS03 ZN ? GO:0000448 ... P05733 36423630
    800480 8eti:m (3.7) BS01 rna ? GO:0000463 ... O74399 36423630
    800481 8eti:n (3.7) BS01 rna ? GO:0000463 ... O60164 36423630
    800482 8eti:n (3.7) BS02 rna ? GO:0000463 ... O60164 36423630
    800483 8eti:o (3.7) BS01 rna ? GO:0003676 ... O74978 36423630
    800484 8eti:r (3.7) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    800485 8eti:t (3.7) BS01 rna ? GO:0000463 ... P17937 36423630
    800486 8eti:u (3.7) BS01 rna ? GO:0003735 ... Q10353 36423630
    800487 8eti:v (3.7) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800488 8eti:x (3.7) BS01 rna ? GO:0000460 ... O14180 36423630
    800489 8etj:3 (3.2) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800490 8etj:B (3.2) BS01 rna ? GO:0002181 ... P40372 36423630
    800491 8etj:C (3.2) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800492 8etj:C (3.2) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800493 8etj:C (3.2) BS03 peptide ? GO:0002181 ... Q9P784 36423630
    800494 8etj:E (3.2) BS01 rna ? GO:0002181 ... P79071 36423630
    800495 8etj:F (3.2) BS01 rna ? GO:0000463 ... P25457 36423630
    800496 8etj:F (3.2) BS02 peptide ? GO:0000463 ... P25457 36423630
    800497 8etj:G (3.2) BS01 rna ? GO:0000470 ... O13672 36423630
    800498 8etj:G (3.2) BS02 rna ? GO:0000470 ... O13672 36423630
    800499 8etj:H (3.2) BS01 rna ? GO:0002181 ... Q10232 36423630
    800500 8etj:L (3.2) BS01 rna ? GO:0002181 ... O74175 36423630
    800501 8etj:L (3.2) BS02 rna ? GO:0002181 ... O74175 36423630
    800502 8etj:M (3.2) BS01 rna ? GO:0002181 ... O94238 36423630
    800503 8etj:N (3.2) BS01 rna ? GO:0002181 ... O74895 36423630
    800504 8etj:N (3.2) BS02 rna ? GO:0002181 ... O74895 36423630
    800505 8etj:O (3.2) BS01 rna ? GO:0002181 ... O42991 36423630
    800506 8etj:P (3.2) BS01 rna ? GO:0002181 ... O14339 36423630
    800507 8etj:P (3.2) BS02 rna ? GO:0002181 ... O14339 36423630
    800508 8etj:Q (3.2) BS01 rna ? GO:0002181 ... Q10192 36423630
    800509 8etj:R (3.2) BS01 rna ? GO:0002181 ... P05734 36423630
    800510 8etj:S (3.2) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800511 8etj:S (3.2) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800512 8etj:V (3.2) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800513 8etj:W (3.2) BS01 rna ? GO:0000027 ... Q9USZ6 36423630
    800514 8etj:Y (3.2) BS01 rna ? GO:0002181 ... P78946 36423630
    800515 8etj:Y (3.2) BS02 rna ? GO:0002181 ... P78946 36423630
    800516 8etj:a (3.2) BS01 rna ? GO:0002181 ... P36585 36423630
    800517 8etj:b (3.2) BS01 rna ? GO:0000054 ... O94659 36423630
    800518 8etj:d (3.2) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800519 8etj:e (3.2) BS01 rna ? GO:0002181 ... P79015 36423630
    800520 8etj:f (3.2) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800521 8etj:h (3.2) BS01 rna ? GO:0000463 ... O74904 36423630
    800522 8etj:h (3.2) BS02 rna ? GO:0000463 ... O74904 36423630
    800523 8etj:i (3.2) BS01 rna ? GO:0002181 ... O94658 36423630
    800524 8etj:j (3.2) BS01 rna ? GO:0000448 ... P05733 36423630
    800525 8etj:j (3.2) BS02 rna ? GO:0000448 ... P05733 36423630
    800526 8etj:j (3.2) BS03 ZN ? GO:0000448 ... P05733 36423630
    800527 8etj:r (3.2) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    800528 8etj:s (3.2) BS01 rna ? GO:0003924 ... O74791 36423630
    800529 8etj:u (3.2) BS01 rna ? GO:0003735 ... Q10353 36423630
    800530 8etj:y (3.2) BS01 rna ? GO:0000054 ... O94476 36423630
    800531 8etj:z (3.2) BS01 rna ? GO:0003674 ... Q96WW3 36423630
    800532 8etk:A (1.83) BS01 WU9 3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0006699 ... A0A805Z5R7 N/A
    800533 8etk:B (1.83) BS01 WU9 3.5.1.-
    3.5.1.24
    3.5.1.74
    GO:0006699 ... A0A805Z5R7 N/A
    800534 8etl:A (2.3) BS01 VND 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800535 8etl:B (2.3) BS01 VND 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800536 8etm:A (3.2) BS01 WTT 2.3.1.20
    2.3.1.76
    GO:0001523 ... O75907 37248213
    800537 8etm:B (3.2) BS01 WTT 2.3.1.20
    2.3.1.76
    GO:0001523 ... O75907 37248213
    800538 8eto:A (2.3) BS01 W9V 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800539 8eto:B (2.3) BS01 W9V 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800540 8etp:A (3.52) BS01 PCG ? GO:0005216 ... Q16281 37463923
    800541 8etp:B (3.52) BS01 PCG ? GO:0005216 ... Q16281 37463923
    800542 8etp:C (3.52) BS01 PCG ? GO:0005216 ... Q16281 37463923
    800543 8etp:D (3.52) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    800544 8etr:A (3.5) BS01 ADP 3.6.4.- N/A Q96P20 36279149
    800545 8etr:A (3.5) BS02 WTN 3.6.4.- N/A Q96P20 36279149
    800546 8ets:Q (3.04) BS01 peptide 3.6.4.- N/A P53115 37384669
    800547 8ets:T (3.04) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800548 8ets:U (3.04) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800549 8ets:V (3.04) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800550 8ets:V (3.04) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800551 8ets:W (3.04) BS01 peptide 3.6.4.12 GO:0000492 ... Q12464 37384669
    800552 8ets:W (3.04) BS02 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800553 8ets:X (3.04) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800554 8ets:X (3.04) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800555 8ets:Y (3.04) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800556 8ett:A (6.68) BS01 dna ? GO:0000786 ... P84233 37384669
    800557 8ett:A (6.68) BS02 dna ? GO:0000786 ... P84233 37384669
    800558 8ett:B (6.68) BS01 dna ? GO:0000786 ... P62799 37384669
    800559 8ett:B (6.68) BS02 dna ? GO:0000786 ... P62799 37384669
    800560 8ett:C (6.68) BS01 dna ? GO:0000786 ... P06897 37384669
    800561 8ett:C (6.68) BS02 dna ? GO:0000786 ... P06897 37384669
    800562 8ett:D (6.68) BS01 dna ? GO:0000786 ... P02281 37384669
    800563 8ett:D (6.68) BS02 dna ? GO:0000786 ... P02281 37384669
    800564 8ett:E (6.68) BS01 dna ? GO:0000786 ... P84233 37384669
    800565 8ett:E (6.68) BS02 dna ? GO:0000786 ... P84233 37384669
    800566 8ett:F (6.68) BS01 dna ? GO:0000786 ... P62799 37384669
    800567 8ett:F (6.68) BS02 dna ? GO:0000786 ... P62799 37384669
    800568 8etu:Q (2.8) BS01 peptide 3.6.4.- N/A P53115 37384669
    800569 8etu:T (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800570 8etu:U (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800571 8etu:V (2.8) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800572 8etu:V (2.8) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800573 8etu:W (2.8) BS01 peptide 3.6.4.12 GO:0000492 ... Q12464 37384669
    800574 8etu:W (2.8) BS02 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800575 8etu:X (2.8) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800576 8etu:X (2.8) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800577 8etu:Y (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800578 8etv:A (3.16) BS01 dna ? GO:0000776 ... P02302 37384669
    800579 8etv:A (3.16) BS02 dna ? GO:0000776 ... P02302 37384669
    800580 8etv:B (3.16) BS01 dna ? GO:0000786 ... P62799 37384669
    800581 8etv:B (3.16) BS02 dna ? GO:0000786 ... P62799 37384669
    800582 8etv:C (3.16) BS01 dna ? GO:0000786 ... Q6AZJ8 37384669
    800583 8etv:C (3.16) BS02 dna ? GO:0000786 ... Q6AZJ8 37384669
    800584 8etv:D (3.16) BS01 dna ? GO:0000786 ... P02281 37384669
    800585 8etv:D (3.16) BS02 dna ? GO:0000786 ... P02281 37384669
    800586 8etv:E (3.16) BS01 dna ? GO:0000776 ... P84233 37384669
    800587 8etv:E (3.16) BS02 dna ? GO:0000776 ... P84233 37384669
    800588 8etv:F (3.16) BS01 dna ? GO:0000786 ... P62799 37384669
    800589 8etv:F (3.16) BS02 dna ? GO:0000786 ... P62799 37384669
    800590 8etw:T (2.64) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800591 8etw:U (2.64) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800592 8etw:V (2.64) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800593 8etw:V (2.64) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800594 8etw:W (2.64) BS01 peptide 3.6.4.12 GO:0000492 ... Q12464 37384669
    800595 8etw:W (2.64) BS02 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800596 8etw:X (2.64) BS01 peptide 3.6.4.12 GO:0000492 ... Q03940 37384669
    800597 8etw:X (2.64) BS02 ADP 3.6.4.12 GO:0000492 ... Q03940 37384669
    800598 8etw:Y (2.64) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 37384669
    800599 8eu2:K (2.93) BS01 dna N/A N/A N/A 37384669
    800600 8eu2:L (2.93) BS01 dna N/A N/A N/A 37384669

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).