SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800801 8eug:Q (2.8) BS01 rna ? GO:0002181 ... Q10192 36423630
    800802 8eug:R (2.8) BS01 rna ? GO:0002181 ... P05734 36423630
    800803 8eug:S (2.8) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800804 8eug:S (2.8) BS02 rna ? GO:0002181 ... P0CT68 36423630
    800805 8eug:T (2.8) BS01 rna ? GO:0002181 ... Q9UUC1 36423630
    800806 8eug:T (2.8) BS02 rna ? GO:0002181 ... Q9UUC1 36423630
    800807 8eug:U (2.8) BS01 rna ? GO:0002181 ... Q09668 36423630
    800808 8eug:V (2.8) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800809 8eug:X (2.8) BS01 rna ? GO:0002181 ... Q10330 36423630
    800810 8eug:X (2.8) BS02 rna ? GO:0002181 ... Q10330 36423630
    800811 8eug:Y (2.8) BS01 rna ? GO:0002181 ... P78946 36423630
    800812 8eug:Y (2.8) BS02 rna ? GO:0002181 ... P78946 36423630
    800813 8eug:Z (2.8) BS01 rna ? GO:0002181 ... O14388 36423630
    800814 8eug:a (2.8) BS01 rna ? GO:0002181 ... P36585 36423630
    800815 8eug:b (2.8) BS01 rna ? GO:0002181 ... Q92366 36423630
    800816 8eug:c (2.8) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    800817 8eug:d (2.8) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800818 8eug:e (2.8) BS01 rna ? GO:0002181 ... P79015 36423630
    800819 8eug:f (2.8) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800820 8eug:g (2.8) BS01 rna ? GO:0002181 ... O42846 36423630
    800821 8eug:h (2.8) BS01 rna ? GO:0000463 ... O74904 36423630
    800822 8eug:h (2.8) BS02 rna ? GO:0000463 ... O74904 36423630
    800823 8eug:i (2.8) BS01 rna ? GO:0002181 ... O94658 36423630
    800824 8eug:j (2.8) BS01 rna ? GO:0000448 ... P05733 36423630
    800825 8eug:j (2.8) BS02 rna ? GO:0000448 ... P05733 36423630
    800826 8eug:j (2.8) BS03 ZN ? GO:0000448 ... P05733 36423630
    800827 8eug:k (2.8) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    800828 8eug:m (2.8) BS01 rna ? GO:0000463 ... O74399 36423630
    800829 8eug:n (2.8) BS01 rna ? GO:0000463 ... O60164 36423630
    800830 8eug:n (2.8) BS02 rna ? GO:0000463 ... O60164 36423630
    800831 8eug:o (2.8) BS01 rna ? GO:0002181 ... Q9UTI8 36423630
    800832 8eug:u (2.8) BS01 rna ? GO:0003735 ... Q10353 36423630
    800833 8euh:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... P33006 36779970
    800834 8euh:A (2.0) BS02 XGE 1.14.-.- GO:0004497 ... P33006 36779970
    800835 8euh:A (2.0) BS03 XGE 1.14.-.- GO:0004497 ... P33006 36779970
    800836 8eui:3 (3.1) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800837 8eui:8 (3.1) BS01 rna ? GO:0002181 ... P05767 36423630
    800838 8eui:8 (3.1) BS02 rna ? GO:0002181 ... P05767 36423630
    800839 8eui:A (3.1) BS01 rna ? GO:0002181 ... P0CT70 36423630
    800840 8eui:B (3.1) BS01 rna ? GO:0002181 ... P40372 36423630
    800841 8eui:C (3.1) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800842 8eui:C (3.1) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800843 8eui:D (3.1) BS01 rna ? GO:0000027 ... P52822 36423630
    800844 8eui:D (3.1) BS02 rna ? GO:0000027 ... P52822 36423630
    800845 8eui:E (3.1) BS01 rna ? GO:0002181 ... P79071 36423630
    800846 8eui:F (3.1) BS01 rna ? GO:0000463 ... P25457 36423630
    800847 8eui:F (3.1) BS02 rna ? GO:0000463 ... P25457 36423630
    800848 8eui:G (3.1) BS01 rna ? GO:0000470 ... O13672 36423630
    800849 8eui:G (3.1) BS02 rna ? GO:0000470 ... O13672 36423630
    800850 8eui:H (3.1) BS01 rna ? GO:0002181 ... Q10232 36423630
    800851 8eui:I (3.1) BS01 rna ? GO:0002181 ... Q09127 36423630
    800852 8eui:I (3.1) BS02 rna ? GO:0002181 ... Q09127 36423630
    800853 8eui:J (3.1) BS01 rna ? GO:0002181 ... P0CT77 36423630
    800854 8eui:J (3.1) BS02 rna ? GO:0002181 ... P0CT77 36423630
    800855 8eui:K (3.1) BS01 rna ? GO:0002181 ... Q9HGL8 36423630
    800856 8eui:L (3.1) BS01 rna ? GO:0002181 ... O74175 36423630
    800857 8eui:L (3.1) BS02 rna ? GO:0002181 ... O74175 36423630
    800858 8eui:M (3.1) BS01 rna ? GO:0002181 ... O94238 36423630
    800859 8eui:N (3.1) BS01 rna ? GO:0002181 ... O74895 36423630
    800860 8eui:N (3.1) BS02 rna ? GO:0002181 ... O74895 36423630
    800861 8eui:O (3.1) BS01 rna ? GO:0002181 ... O42991 36423630
    800862 8eui:P (3.1) BS01 rna ? GO:0002181 ... O14339 36423630
    800863 8eui:P (3.1) BS02 rna ? GO:0002181 ... O14339 36423630
    800864 8eui:Q (3.1) BS01 rna ? GO:0002181 ... Q10192 36423630
    800865 8eui:R (3.1) BS01 rna ? GO:0002181 ... P05734 36423630
    800866 8eui:S (3.1) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800867 8eui:S (3.1) BS02 rna ? GO:0002181 ... P0CT68 36423630
    800868 8eui:T (3.1) BS01 rna ? GO:0002181 ... Q9UUC1 36423630
    800869 8eui:T (3.1) BS02 rna ? GO:0002181 ... Q9UUC1 36423630
    800870 8eui:U (3.1) BS01 rna ? GO:0002181 ... Q09668 36423630
    800871 8eui:V (3.1) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800872 8eui:X (3.1) BS01 rna ? GO:0002181 ... Q10330 36423630
    800873 8eui:X (3.1) BS02 rna ? GO:0002181 ... Q10330 36423630
    800874 8eui:Y (3.1) BS01 rna ? GO:0002181 ... P78946 36423630
    800875 8eui:Y (3.1) BS02 rna ? GO:0002181 ... P78946 36423630
    800876 8eui:Z (3.1) BS01 rna ? GO:0002181 ... O14388 36423630
    800877 8eui:a (3.1) BS01 rna ? GO:0002181 ... P36585 36423630
    800878 8eui:b (3.1) BS01 rna ? GO:0002181 ... Q92366 36423630
    800879 8eui:c (3.1) BS01 rna ? GO:0002181 ... Q9UTP0 36423630
    800880 8eui:d (3.1) BS01 rna ? GO:0002181 ... Q9URX6 36423630
    800881 8eui:e (3.1) BS01 rna ? GO:0002181 ... P79015 36423630
    800882 8eui:f (3.1) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800883 8eui:g (3.1) BS01 rna ? GO:0002181 ... O42846 36423630
    800884 8eui:h (3.1) BS01 rna ? GO:0000463 ... O74904 36423630
    800885 8eui:h (3.1) BS02 rna ? GO:0000463 ... O74904 36423630
    800886 8eui:i (3.1) BS01 rna ? GO:0002181 ... O94658 36423630
    800887 8eui:j (3.1) BS01 rna ? GO:0000448 ... P05733 36423630
    800888 8eui:j (3.1) BS02 rna ? GO:0000448 ... P05733 36423630
    800889 8eui:j (3.1) BS03 ZN ? GO:0000448 ... P05733 36423630
    800890 8eui:k (3.1) BS01 rna ? GO:0002181 ... Q9USR7 36423630
    800891 8eui:m (3.1) BS01 rna ? GO:0000463 ... O74399 36423630
    800892 8eui:n (3.1) BS01 rna ? GO:0000463 ... O60164 36423630
    800893 8eui:n (3.1) BS02 rna ? GO:0000463 ... O60164 36423630
    800894 8eui:o (3.1) BS01 rna ? GO:0002181 ... Q9UTI8 36423630
    800895 8eui:u (3.1) BS01 rna ? GO:0003735 ... Q10353 36423630
    800896 8euj:H (3.36) BS01 dna ? GO:0000786 ... P02281 37384669
    800897 8euj:M (3.36) BS01 dna N/A N/A N/A 37384669
    800898 8euj:M (3.36) BS02 dna N/A N/A N/A 37384669
    800899 8euj:O (3.36) BS01 dna N/A N/A N/A 37384669
    800900 8euj:O (3.36) BS02 dna N/A N/A N/A 37384669
    800901 8euj:a (3.36) BS01 dna N/A N/A N/A 37384669
    800902 8euj:a (3.36) BS02 dna N/A N/A N/A 37384669
    800903 8euj:b (3.36) BS01 dna N/A N/A N/A 37384669
    800904 8euj:b (3.36) BS02 dna N/A N/A N/A 37384669
    800905 8euj:f (3.36) BS01 dna N/A N/A N/A 37384669
    800906 8euj:f (3.36) BS02 dna N/A N/A N/A 37384669
    800907 8euj:h (3.36) BS01 dna N/A N/A N/A 37384669
    800908 8euj:h (3.36) BS02 dna N/A N/A N/A 37384669
    800909 8euj:k (3.36) BS01 dna N/A N/A N/A 37384669
    800910 8euj:k (3.36) BS02 dna N/A N/A N/A 37384669
    800911 8euk:A (1.98) BS01 HEM 1.14.-.- GO:0004497 ... P33006 36779970
    800912 8eul:A (2.24) BS01 HEM 1.14.-.- GO:0004497 ... P33006 36779970
    800913 8eul:A (2.24) BS02 XGE 1.14.-.- GO:0004497 ... P33006 36779970
    800914 8eum:A (2.1) BS01 HEM ? GO:0019825 ... Q9YFF4 36948184
    800915 8eum:B (2.1) BS01 HEM ? GO:0019825 ... Q9YFF4 36948184
    800916 8eum:C (2.1) BS01 HEM ? GO:0019825 ... Q9YFF4 36948184
    800917 8eum:D (2.1) BS01 HEM ? GO:0019825 ... Q9YFF4 36948184
    800918 8eun:A (2.5) BS01 WUF ? GO:0019825 ... Q9YFF4 36948184
    800919 8eun:B (2.5) BS01 WUF ? GO:0019825 ... Q9YFF4 36948184
    800920 8eup:3 (3.1) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800921 8eup:5 (3.1) BS01 rna ? GO:0003674 ... O94698 36423630
    800922 8eup:A (3.1) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    800923 8eup:B (3.1) BS01 rna ? GO:0002181 ... P40372 36423630
    800924 8eup:C (3.1) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800925 8eup:C (3.1) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800926 8eup:D (3.1) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800927 8eup:E (3.1) BS01 rna ? GO:0002181 ... P79071 36423630
    800928 8eup:F (3.1) BS01 rna ? GO:0000463 ... P25457 36423630
    800929 8eup:F (3.1) BS02 peptide ? GO:0000463 ... P25457 36423630
    800930 8eup:G (3.1) BS01 rna ? GO:0000470 ... O13672 36423630
    800931 8eup:G (3.1) BS02 rna ? GO:0000470 ... O13672 36423630
    800932 8eup:G (3.1) BS03 rna ? GO:0000470 ... O13672 36423630
    800933 8eup:H (3.1) BS01 rna ? GO:0002181 ... Q10232 36423630
    800934 8eup:K (3.1) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800935 8eup:L (3.1) BS01 rna ? GO:0002181 ... O74175 36423630
    800936 8eup:L (3.1) BS02 rna ? GO:0002181 ... O74175 36423630
    800937 8eup:M (3.1) BS01 rna ? GO:0002181 ... O94238 36423630
    800938 8eup:N (3.1) BS01 rna ? GO:0002181 ... O74895 36423630
    800939 8eup:N (3.1) BS02 rna ? GO:0002181 ... O74895 36423630
    800940 8eup:O (3.1) BS01 rna ? GO:0002181 ... O42991 36423630
    800941 8eup:P (3.1) BS01 rna ? GO:0002181 ... O14339 36423630
    800942 8eup:P (3.1) BS02 rna ? GO:0002181 ... O14339 36423630
    800943 8eup:Q (3.1) BS01 rna ? GO:0002181 ... Q10192 36423630
    800944 8eup:S (3.1) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800945 8eup:S (3.1) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800946 8eup:V (3.1) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800947 8eup:Y (3.1) BS01 rna ? GO:0002181 ... P78946 36423630
    800948 8eup:Y (3.1) BS02 rna ? GO:0002181 ... P78946 36423630
    800949 8eup:b (3.1) BS01 rna ? GO:0000054 ... O94659 36423630
    800950 8eup:e (3.1) BS01 rna ? GO:0002181 ... P79015 36423630
    800951 8eup:f (3.1) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    800952 8eup:h (3.1) BS01 rna ? GO:0000463 ... O74904 36423630
    800953 8eup:h (3.1) BS02 rna ? GO:0000463 ... O74904 36423630
    800954 8eup:i (3.1) BS01 rna ? GO:0002181 ... O94658 36423630
    800955 8eup:j (3.1) BS01 rna ? GO:0000448 ... P05733 36423630
    800956 8eup:j (3.1) BS02 rna ? GO:0000448 ... P05733 36423630
    800957 8eup:j (3.1) BS03 ZN ? GO:0000448 ... P05733 36423630
    800958 8eup:m (3.1) BS01 rna ? GO:0000463 ... O74399 36423630
    800959 8eup:o (3.1) BS01 rna ? GO:0003676 ... O74978 36423630
    800960 8eup:r (3.1) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    800961 8eup:v (3.1) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800962 8eup:v (3.1) BS02 rna ? GO:0003674 ... Q9Y7Z1 36423630
    800963 8eup:x (3.1) BS01 rna ? GO:0000460 ... O14180 36423630
    800964 8eur:A (2.61) BS01 WAS 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800965 8eur:B (2.61) BS01 WAS 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800966 8eut:A (2.8) BS01 WV5 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800967 8eut:B (2.8) BS01 WV5 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800968 8eux:A (2.8) BS01 WV9 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800969 8eux:B (2.8) BS01 WV9 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    800970 8euy:3 (3.0) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    800971 8euy:5 (3.0) BS01 rna ? GO:0003674 ... O94698 36423630
    800972 8euy:A (3.0) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    800973 8euy:B (3.0) BS01 rna ? GO:0002181 ... P40372 36423630
    800974 8euy:C (3.0) BS01 rna ? GO:0002181 ... Q9P784 36423630
    800975 8euy:C (3.0) BS02 rna ? GO:0002181 ... Q9P784 36423630
    800976 8euy:C (3.0) BS03 peptide ? GO:0002181 ... Q9P784 36423630
    800977 8euy:D (3.0) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    800978 8euy:E (3.0) BS01 rna ? GO:0002181 ... P79071 36423630
    800979 8euy:F (3.0) BS01 rna ? GO:0000463 ... P25457 36423630
    800980 8euy:F (3.0) BS02 peptide ? GO:0000463 ... P25457 36423630
    800981 8euy:G (3.0) BS01 rna ? GO:0000470 ... O13672 36423630
    800982 8euy:G (3.0) BS02 rna ? GO:0000470 ... O13672 36423630
    800983 8euy:G (3.0) BS03 rna ? GO:0000470 ... O13672 36423630
    800984 8euy:H (3.0) BS01 rna ? GO:0002181 ... Q10232 36423630
    800985 8euy:K (3.0) BS01 rna ? GO:0003723 ... Q9UT32 36423630
    800986 8euy:L (3.0) BS01 rna ? GO:0002181 ... O74175 36423630
    800987 8euy:L (3.0) BS02 rna ? GO:0002181 ... O74175 36423630
    800988 8euy:M (3.0) BS01 rna ? GO:0002181 ... O94238 36423630
    800989 8euy:N (3.0) BS01 rna ? GO:0002181 ... O74895 36423630
    800990 8euy:N (3.0) BS02 rna ? GO:0002181 ... O74895 36423630
    800991 8euy:O (3.0) BS01 rna ? GO:0002181 ... O42991 36423630
    800992 8euy:P (3.0) BS01 rna ? GO:0002181 ... O14339 36423630
    800993 8euy:P (3.0) BS02 rna ? GO:0002181 ... O14339 36423630
    800994 8euy:Q (3.0) BS01 rna ? GO:0002181 ... Q10192 36423630
    800995 8euy:S (3.0) BS01 rna ? GO:0002181 ... P0CT68 36423630
    800996 8euy:S (3.0) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    800997 8euy:V (3.0) BS01 rna ? GO:0002181 ... P0CT60 36423630
    800998 8euy:Y (3.0) BS01 rna ? GO:0002181 ... P78946 36423630
    800999 8euy:Y (3.0) BS02 rna ? GO:0002181 ... P78946 36423630
    801000 8euy:b (3.0) BS01 rna ? GO:0000054 ... O94659 36423630

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).