SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801401 8ev7:2Q (2.89) BS02 rna ? GO:0003735 ... P60489 37537169
    801402 8ev7:2Q (2.89) BS03 rna ? GO:0003735 ... P60489 37537169
    801403 8ev7:2R (2.89) BS01 rna ? GO:0003735 ... Q9Z9H5 37537169
    801404 8ev7:2S (2.89) BS01 rna ? GO:0003735 ... Q5SHQ4 37537169
    801405 8ev7:2S (2.89) BS02 rna ? GO:0003735 ... Q5SHQ4 37537169
    801406 8ev7:2T (2.89) BS01 rna ? GO:0003735 ... P60490 37537169
    801407 8ev7:2T (2.89) BS02 rna ? GO:0003735 ... P60490 37537169
    801408 8ev7:2U (2.89) BS01 rna ? GO:0000027 ... P60491 37537169
    801409 8ev7:2V (2.89) BS01 rna ? GO:0003723 ... P60492 37537169
    801410 8ev7:2W (2.89) BS01 rna ? GO:0003735 ... Q5SHP3 37537169
    801411 8ev7:2X (2.89) BS01 rna ? GO:0003735 ... Q5SHP0 37537169
    801412 8ev7:2Y (2.89) BS01 rna ? GO:0003723 ... Q5SHP9 37537169
    801413 8ev7:2Y (2.89) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    801414 8ev7:2Z (2.89) BS01 rna ? GO:0003723 ... Q5SHZ1 37537169
    801415 8ev7:2b (2.89) BS01 rna ? GO:0003735 ... P80371 37537169
    801416 8ev7:2c (2.89) BS01 rna ? GO:0003676 ... P80372 37537169
    801417 8ev7:2d (2.89) BS01 rna ? GO:0003723 ... P80373 37537169
    801418 8ev7:2d (2.89) BS02 SF4 ? GO:0003723 ... P80373 37537169
    801419 8ev7:2e (2.89) BS01 rna ? GO:0003723 ... Q5SHQ5 37537169
    801420 8ev7:2e (2.89) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    801421 8ev7:2f (2.89) BS01 rna ? GO:0003735 ... Q5SLP8 37537169
    801422 8ev7:2g (2.89) BS01 rna ? GO:0000049 ... P17291 37537169
    801423 8ev7:2g (2.89) BS02 rna ? GO:0000049 ... P17291 37537169
    801424 8ev7:2g (2.89) BS03 MG ? GO:0000049 ... P17291 37537169
    801425 8ev7:2g (2.89) BS04 MG ? GO:0000049 ... P17291 37537169
    801426 8ev7:2h (2.89) BS01 rna ? GO:0003735 ... P0DOY9 37537169
    801427 8ev7:2i (2.89) BS01 rna ? GO:0003723 ... P80374 37537169
    801428 8ev7:2i (2.89) BS02 rna ? GO:0003723 ... P80374 37537169
    801429 8ev7:2j (2.89) BS01 rna ? GO:0000049 ... Q5SHN7 37537169
    801430 8ev7:2k (2.89) BS01 rna ? GO:0003735 ... P80376 37537169
    801431 8ev7:2l (2.89) BS01 rna ? GO:0000049 ... Q5SHN3 37537169
    801432 8ev7:2l (2.89) BS02 rna ? GO:0000049 ... Q5SHN3 37537169
    801433 8ev7:2l (2.89) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    801434 8ev7:2m (2.89) BS01 rna ? GO:0000049 ... P80377 37537169
    801435 8ev7:2n (2.89) BS01 rna ? GO:0003735 ... P0DOY6 37537169
    801436 8ev7:2n (2.89) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    801437 8ev7:2o (2.89) BS01 rna ? GO:0003735 ... Q5SJ76 37537169
    801438 8ev7:2o (2.89) BS02 rna ? GO:0003735 ... Q5SJ76 37537169
    801439 8ev7:2p (2.89) BS01 rna ? GO:0003735 ... Q5SJH3 37537169
    801440 8ev7:2q (2.89) BS01 rna ? GO:0003735 ... P0DOY7 37537169
    801441 8ev7:2r (2.89) BS01 rna ? GO:0003735 ... Q5SLQ0 37537169
    801442 8ev7:2s (2.89) BS01 rna ? GO:0000028 ... Q5SHP2 37537169
    801443 8ev7:2t (2.89) BS01 rna ? GO:0003723 ... P80380 37537169
    801444 8ev7:2t (2.89) BS02 MG ? GO:0003723 ... P80380 37537169
    801445 8ev8:A (3.11) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801446 8ev8:B (3.11) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801447 8ev8:C (3.11) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801448 8ev8:D (3.11) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    801449 8ev9:A (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801450 8ev9:B (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801451 8ev9:C (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801452 8ev9:D (3.33) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    801453 8eva:A (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801454 8eva:B (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801455 8eva:C (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801456 8eva:D (3.33) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    801457 8evb:A (3.6) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801458 8evb:B (3.6) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801459 8evb:C (3.6) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801460 8evb:D (3.6) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    801461 8evc:A (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801462 8evc:B (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801463 8evc:C (3.33) BS01 PCG ? GO:0005216 ... Q16281 37463923
    801464 8evc:D (3.33) BS01 PCG ? GO:0001750 ... Q9NQW8 37463923
    801465 8eve:A (2.35) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801466 8eve:A (2.35) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801467 8eve:A (2.35) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801468 8eve:A (2.35) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801469 8evf:A (2.87) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801470 8evf:A (2.87) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801471 8evf:A (2.87) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801472 8evf:A (2.87) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801473 8evf:A (2.87) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    801474 8evg:A (2.75) BS01 dna ? GO:0000786 ... P68431 N/A
    801475 8evg:A (2.75) BS02 dna ? GO:0000786 ... P68431 N/A
    801476 8evg:B (2.75) BS01 dna ? GO:0000781 ... P62805 N/A
    801477 8evg:B (2.75) BS02 dna ? GO:0000781 ... P62805 N/A
    801478 8evg:C (2.75) BS01 dna ? GO:0000786 ... Q16777 N/A
    801479 8evg:C (2.75) BS02 dna ? GO:0000786 ... Q16777 N/A
    801480 8evg:D (2.75) BS01 dna ? GO:0000786 ... Q16778 N/A
    801481 8evg:D (2.75) BS02 dna ? GO:0000786 ... Q16778 N/A
    801482 8evg:E (2.75) BS01 dna ? GO:0000786 ... P68431 N/A
    801483 8evg:E (2.75) BS02 dna ? GO:0000786 ... P68431 N/A
    801484 8evg:F (2.75) BS01 dna ? GO:0000781 ... P62805 N/A
    801485 8evg:F (2.75) BS02 dna ? GO:0000781 ... P62805 N/A
    801486 8evg:G (2.75) BS01 dna ? GO:0000786 ... Q16777 N/A
    801487 8evg:G (2.75) BS02 dna ? GO:0000786 ... Q16777 N/A
    801488 8evg:H (2.75) BS01 dna ? GO:0000786 ... Q16778 N/A
    801489 8evg:H (2.75) BS02 dna ? GO:0000786 ... Q16778 N/A
    801490 8evh:A (2.85) BS01 dna ? GO:0000786 ... P68431 38267599
    801491 8evh:A (2.85) BS02 dna ? GO:0000786 ... P68431 38267599
    801492 8evh:B (2.85) BS01 dna ? GO:0000781 ... P62805 38267599
    801493 8evh:B (2.85) BS02 dna ? GO:0000781 ... P62805 38267599
    801494 8evh:C (2.85) BS01 dna ? GO:0000786 ... Q16777 38267599
    801495 8evh:C (2.85) BS02 dna ? GO:0000786 ... Q16777 38267599
    801496 8evh:D (2.85) BS01 dna ? GO:0000786 ... Q16778 38267599
    801497 8evh:D (2.85) BS02 dna ? GO:0000786 ... Q16778 38267599
    801498 8evh:E (2.85) BS01 dna ? GO:0000786 ... P68431 38267599
    801499 8evh:E (2.85) BS02 dna ? GO:0000786 ... P68431 38267599
    801500 8evh:F (2.85) BS01 dna ? GO:0000781 ... P62805 38267599
    801501 8evh:F (2.85) BS02 dna ? GO:0000781 ... P62805 38267599
    801502 8evh:G (2.85) BS01 dna ? GO:0000786 ... Q16777 38267599
    801503 8evh:G (2.85) BS02 dna ? GO:0000786 ... Q16777 38267599
    801504 8evh:H (2.85) BS01 dna ? GO:0000786 ... Q16778 38267599
    801505 8evh:H (2.85) BS02 dna ? GO:0000786 ... Q16778 38267599
    801506 8evh:O (2.85) BS01 dna ? GO:0000122 ... P17433 38267599
    801507 8evh:O (2.85) BS02 dna ? GO:0000122 ... P17433 38267599
    801508 8evi:A (2.64) BS01 dna ? GO:0000786 ... P68431 38267599
    801509 8evi:A (2.64) BS02 dna ? GO:0000786 ... P68431 38267599
    801510 8evi:B (2.64) BS01 dna ? GO:0000781 ... P62805 38267599
    801511 8evi:B (2.64) BS02 dna ? GO:0000781 ... P62805 38267599
    801512 8evi:C (2.64) BS01 dna ? GO:0000786 ... Q16777 38267599
    801513 8evi:C (2.64) BS02 dna ? GO:0000786 ... Q16777 38267599
    801514 8evi:D (2.64) BS01 dna ? GO:0000786 ... Q16778 38267599
    801515 8evi:D (2.64) BS02 dna ? GO:0000786 ... Q16778 38267599
    801516 8evi:E (2.64) BS01 dna ? GO:0000786 ... P68431 38267599
    801517 8evi:E (2.64) BS02 dna ? GO:0000786 ... P68431 38267599
    801518 8evi:F (2.64) BS01 dna ? GO:0000781 ... P62805 38267599
    801519 8evi:F (2.64) BS02 dna ? GO:0000781 ... P62805 38267599
    801520 8evi:G (2.64) BS01 dna ? GO:0000786 ... Q16777 38267599
    801521 8evi:G (2.64) BS02 dna ? GO:0000786 ... Q16777 38267599
    801522 8evi:H (2.64) BS01 dna ? GO:0000786 ... Q16778 38267599
    801523 8evi:H (2.64) BS02 dna ? GO:0000786 ... Q16778 38267599
    801524 8evi:O (2.64) BS01 dna ? GO:0000122 ... P17433 38267599
    801525 8evi:O (2.64) BS02 dna ? GO:0000122 ... P17433 38267599
    801526 8evj:A (4.1) BS01 dna ? GO:0000786 ... P68431 38267599
    801527 8evj:A (4.1) BS02 dna ? GO:0000786 ... P68431 38267599
    801528 8evj:B (4.1) BS01 dna ? GO:0000781 ... P62805 38267599
    801529 8evj:B (4.1) BS02 dna ? GO:0000781 ... P62805 38267599
    801530 8evj:C (4.1) BS01 dna ? GO:0000786 ... Q16777 38267599
    801531 8evj:C (4.1) BS02 dna ? GO:0000786 ... Q16777 38267599
    801532 8evj:D (4.1) BS01 dna ? GO:0000786 ... Q16778 38267599
    801533 8evj:D (4.1) BS02 dna ? GO:0000786 ... Q16778 38267599
    801534 8evj:E (4.1) BS01 dna ? GO:0000786 ... P68431 38267599
    801535 8evj:E (4.1) BS02 dna ? GO:0000786 ... P68431 38267599
    801536 8evj:F (4.1) BS01 dna ? GO:0000781 ... P62805 38267599
    801537 8evj:F (4.1) BS02 dna ? GO:0000781 ... P62805 38267599
    801538 8evj:G (4.1) BS01 dna ? GO:0000786 ... Q16777 38267599
    801539 8evj:G (4.1) BS02 dna ? GO:0000786 ... Q16777 38267599
    801540 8evj:H (4.1) BS01 dna ? GO:0000786 ... Q16778 38267599
    801541 8evj:O (4.1) BS01 dna ? GO:0000122 ... P17433 38267599
    801542 8evj:O (4.1) BS02 dna ? GO:0000122 ... P17433 38267599
    801543 8evk:A (1.49) BS01 PE0 ? GO:0004150 ... B5Z9C8 36820301
    801544 8evo:B (2.4) BS01 UN9 1.14.11.77 GO:0004065 ... P9WKZ1 N/A
    801545 8evp:AA (2.38) BS01 rna ? GO:0002181 ... P0CX45 37595043
    801546 8evp:AA (2.38) BS02 rna ? GO:0002181 ... P0CX45 37595043
    801547 8evp:AB (2.38) BS01 rna ? GO:0000027 ... P14126 37595043
    801548 8evp:AC (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801549 8evp:AC (2.38) BS02 rna ? GO:0003735 ... N/A 37595043
    801550 8evp:AC (2.38) BS03 MG ? GO:0003735 ... N/A 37595043
    801551 8evp:AD (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801552 8evp:AD (2.38) BS02 rna ? GO:0003735 ... N/A 37595043
    801553 8evp:AE (2.38) BS01 rna ? GO:0000027 ... Q02326 37595043
    801554 8evp:AF (2.38) BS01 rna ? GO:0000463 ... P05737 37595043
    801555 8evp:AF (2.38) BS02 rna ? GO:0000463 ... P05737 37595043
    801556 8evp:AG (2.38) BS01 rna ? GO:0000470 ... P17076 37595043
    801557 8evp:AG (2.38) BS02 rna ? GO:0000470 ... P17076 37595043
    801558 8evp:AH (2.38) BS01 rna ? GO:0002181 ... P05738 37595043
    801559 8evp:AI (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801560 8evp:AI (2.38) BS02 rna ? GO:0003735 ... N/A 37595043
    801561 8evp:AJ (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801562 8evp:AJ (2.38) BS02 rna ? GO:0003735 ... N/A 37595043
    801563 8evp:AL (2.38) BS01 rna ? GO:0002181 ... Q12690 37595043
    801564 8evp:AL (2.38) BS02 rna ? GO:0002181 ... Q12690 37595043
    801565 8evp:AM (2.38) BS01 rna ? GO:0000027 ... P36105 37595043
    801566 8evp:AN (2.38) BS01 rna ? GO:0000470 ... P05748 37595043
    801567 8evp:AN (2.38) BS02 rna ? GO:0000470 ... P05748 37595043
    801568 8evp:AN (2.38) BS03 MG ? GO:0000470 ... P05748 37595043
    801569 8evp:AO (2.38) BS01 rna ? GO:0000470 ... P26784 37595043
    801570 8evp:AP (2.38) BS01 rna ? GO:0000448 ... P05740 37595043
    801571 8evp:AP (2.38) BS02 rna ? GO:0000448 ... P05740 37595043
    801572 8evp:AP (2.38) BS03 MG ? GO:0000448 ... P05740 37595043
    801573 8evp:AQ (2.38) BS01 rna ? GO:0002181 ... P0CX49 37595043
    801574 8evp:AR (2.38) BS01 rna ? GO:0002181 ... P0CX82 37595043
    801575 8evp:AR (2.38) BS02 rna ? GO:0002181 ... P0CX82 37595043
    801576 8evp:AS (2.38) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    801577 8evp:AS (2.38) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    801578 8evp:AT (2.38) BS01 rna ? GO:0002181 ... Q02753 37595043
    801579 8evp:AT (2.38) BS02 rna ? GO:0002181 ... Q02753 37595043
    801580 8evp:AU (2.38) BS01 rna ? GO:0002181 ... P05749 37595043
    801581 8evp:AV (2.38) BS01 rna ? GO:0002181 ... P0CX41 37595043
    801582 8evp:AV (2.38) BS02 rna ? GO:0002181 ... P0CX41 37595043
    801583 8evp:AW (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801584 8evp:AX (2.38) BS01 rna ? GO:0000027 ... P04456 37595043
    801585 8evp:AX (2.38) BS02 rna ? GO:0000027 ... P04456 37595043
    801586 8evp:AY (2.38) BS01 rna ? GO:0002181 ... P05743 37595043
    801587 8evp:AY (2.38) BS02 rna ? GO:0002181 ... P05743 37595043
    801588 8evp:AZ (2.38) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    801589 8evp:Aa (2.38) BS01 rna ? GO:0002181 ... P02406 37595043
    801590 8evp:Ab (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801591 8evp:Ac (2.38) BS01 rna ? GO:0002181 ... P14120 37595043
    801592 8evp:Ad (2.38) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    801593 8evp:Ae (2.38) BS01 rna ? GO:0003735 ... N/A 37595043
    801594 8evp:Af (2.38) BS01 rna ? GO:0000027 ... P05744 37595043
    801595 8evp:Af (2.38) BS02 MG ? GO:0000027 ... P05744 37595043
    801596 8evp:Ag (2.38) BS01 rna ? GO:0002181 ... P87262 37595043
    801597 8evp:Ah (2.38) BS01 rna ? GO:0000463 ... P0CX84 37595043
    801598 8evp:Ah (2.38) BS02 rna ? GO:0000463 ... P0CX84 37595043
    801599 8evp:Ai (2.38) BS01 rna ? GO:0000470 ... P05745 37595043
    801600 8evp:Aj (2.38) BS01 rna ? GO:0000448 ... P49166 37595043

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).