SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801401 8fbb:I (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    801402 8fbb:K (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    801403 8fbb:M (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    801404 8fbb:O (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    801405 8fbb:Q (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801406 8fbb:S (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801407 8fbb:U (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801408 8fbb:W (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801409 8fbb:Y (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801410 8fbb:a (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801411 8fbb:c (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801412 8fbb:e (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    801413 8fbb:g (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    801414 8fbc:A (1.53) BS01 HEM ? GO:0004497 ... A0A3C0KFZ6 37138074
    801415 8fbc:B (1.53) BS01 HEM ? GO:0004497 ... A0A3C0KFZ6 37138074
    801416 8fbg:A (2.29) BS01 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801417 8fbg:A (2.29) BS02 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801418 8fbg:A (2.29) BS03 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801419 8fbg:A (2.29) BS04 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    801420 8fbg:A (2.29) BS05 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    801421 8fbg:A (2.29) BS06 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    801422 8fbg:B (2.29) BS01 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801423 8fbg:B (2.29) BS02 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801424 8fbg:B (2.29) BS03 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801425 8fbg:B (2.29) BS04 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801426 8fbg:B (2.29) BS05 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    801427 8fbg:B (2.29) BS06 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    801428 8fbh:A (2.32) BS01 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801429 8fbh:A (2.32) BS02 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801430 8fbh:A (2.32) BS03 ZN 2.1.1.357 GO:0005634 ... O88491 N/A
    801431 8fbh:A (2.32) BS04 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    801432 8fbl:A (2.7) BS01 PIO ? N/A Q9H813 36633397
    801433 8fbl:B (2.7) BS01 PIO ? N/A Q9H813 36633397
    801434 8fbl:C (2.7) BS01 PIO ? N/A Q9H813 36633397
    801435 8fbm:A (1.9) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801436 8fbm:A (1.9) BS02 XOF 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801437 8fbm:B (1.9) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801438 8fbm:B (1.9) BS02 XOF 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801439 8fbq:A (1.65) BS01 MYA 2.3.1.97 GO:0004379 ... A5K1A2 37669940
    801440 8fbq:A (1.65) BS02 XOQ 2.3.1.97 GO:0004379 ... A5K1A2 37669940
    801441 8fbt:A (2.2) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801442 8fbt:B (2.2) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801443 8fbu:A (2.0) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801444 8fbu:A (2.0) BS02 XOL 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801445 8fbu:B (2.0) BS01 MYA 2.3.1.97 GO:0004379 ... Q5CV46 37722671
    801446 8fbv:A (2.86) BS01 XOW 3.4.22.59 GO:0002218 ... P55212 37406165
    801447 8fbv:B (2.86) BS01 XOW 3.4.22.59 GO:0002218 ... P55212 37406165
    801448 8fbv:D (2.86) BS01 XOW 3.4.22.59 GO:0002218 ... P55212 37406165
    801449 8fbw:A (2.35) BS01 peptide N/A N/A N/A 36976017
    801450 8fbw:B (2.35) BS01 peptide N/A N/A N/A 36976017
    801451 8fbw:C (2.35) BS01 peptide N/A N/A N/A 36976017
    801452 8fbw:D (2.35) BS01 peptide N/A N/A N/A 36976017
    801453 8fbw:D (2.35) BS02 FUC N/A N/A N/A 36976017
    801454 8fc1:10 (2.5) BS01 rna ? GO:0003735 ... P60493 37452045
    801455 8fc1:10 (2.5) BS02 rna ? GO:0003735 ... P60493 37452045
    801456 8fc1:10 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    801457 8fc1:10 (2.5) BS04 MG ? GO:0003735 ... P60493 37452045
    801458 8fc1:11 (2.5) BS01 rna ? GO:0003735 ... P60494 37452045
    801459 8fc1:11 (2.5) BS02 MG ? GO:0003735 ... P60494 37452045
    801460 8fc1:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 37452045
    801461 8fc1:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 37452045
    801462 8fc1:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 37452045
    801463 8fc1:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    801464 8fc1:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    801465 8fc1:13 (2.5) BS05 MG ? GO:0003735 ... Q5SHQ6 37452045
    801466 8fc1:14 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 37452045
    801467 8fc1:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    801468 8fc1:15 (2.5) BS01 rna ? GO:0003735 ... P80339 37452045
    801469 8fc1:15 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    801470 8fc1:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    801471 8fc1:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 37452045
    801472 8fc1:16 (2.5) BS01 rna ? GO:0000049 ... P35871 37452045
    801473 8fc1:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    801474 8fc1:17 (2.5) BS01 rna ? GO:0003735 ... P80340 37452045
    801475 8fc1:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    801476 8fc1:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    801477 8fc1:18 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 37452045
    801478 8fc1:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    801479 8fc1:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    801480 8fc1:19 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 37452045
    801481 8fc1:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    801482 8fc1:1D (2.5) BS01 rna ? GO:0002181 ... P60405 37452045
    801483 8fc1:1D (2.5) BS02 rna ? GO:0002181 ... P60405 37452045
    801484 8fc1:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    801485 8fc1:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    801486 8fc1:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    801487 8fc1:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    801488 8fc1:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    801489 8fc1:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    801490 8fc1:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    801491 8fc1:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    801492 8fc1:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    801493 8fc1:1E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 37452045
    801494 8fc1:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    801495 8fc1:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    801496 8fc1:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    801497 8fc1:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    801498 8fc1:1F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 37452045
    801499 8fc1:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    801500 8fc1:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    801501 8fc1:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    801502 8fc1:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    801503 8fc1:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    801504 8fc1:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    801505 8fc1:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    801506 8fc1:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    801507 8fc1:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    801508 8fc1:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    801509 8fc1:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    801510 8fc1:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    801511 8fc1:1F (2.5) BS14 MG ? GO:0003735 ... Q5SHN9 37452045
    801512 8fc1:1F (2.5) BS15 ARG ? GO:0003735 ... Q5SHN9 37452045
    801513 8fc1:1G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 37452045
    801514 8fc1:1G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 37452045
    801515 8fc1:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    801516 8fc1:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    801517 8fc1:1H (2.5) BS01 rna ? GO:0002181 ... P0DOY8 37452045
    801518 8fc1:1I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 37452045
    801519 8fc1:1N (2.5) BS01 rna ? GO:0003729 ... P60488 37452045
    801520 8fc1:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    801521 8fc1:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    801522 8fc1:1O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 37452045
    801523 8fc1:1O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 37452045
    801524 8fc1:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 37452045
    801525 8fc1:1P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 37452045
    801526 8fc1:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    801527 8fc1:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    801528 8fc1:1Q (2.5) BS01 rna ? GO:0000049 ... P60489 37452045
    801529 8fc1:1Q (2.5) BS02 rna ? GO:0000049 ... P60489 37452045
    801530 8fc1:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    801531 8fc1:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    801532 8fc1:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    801533 8fc1:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    801534 8fc1:1R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 37452045
    801535 8fc1:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    801536 8fc1:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    801537 8fc1:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    801538 8fc1:1R (2.5) BS05 MG ? GO:0003735 ... Q9Z9H5 37452045
    801539 8fc1:1R (2.5) BS06 MG ? GO:0003735 ... Q9Z9H5 37452045
    801540 8fc1:1S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 37452045
    801541 8fc1:1S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 37452045
    801542 8fc1:1T (2.5) BS01 rna ? GO:0003735 ... P60490 37452045
    801543 8fc1:1T (2.5) BS02 rna ? GO:0003735 ... P60490 37452045
    801544 8fc1:1T (2.5) BS03 MG ? GO:0003735 ... P60490 37452045
    801545 8fc1:1U (2.5) BS01 rna ? GO:0000027 ... P60491 37452045
    801546 8fc1:1U (2.5) BS02 MG ? GO:0000027 ... P60491 37452045
    801547 8fc1:1U (2.5) BS03 MG ? GO:0000027 ... P60491 37452045
    801548 8fc1:1U (2.5) BS04 MG ? GO:0000027 ... P60491 37452045
    801549 8fc1:1U (2.5) BS05 MG ? GO:0000027 ... P60491 37452045
    801550 8fc1:1U (2.5) BS06 MG ? GO:0000027 ... P60491 37452045
    801551 8fc1:1V (2.5) BS01 rna ? GO:0003723 ... P60492 37452045
    801552 8fc1:1V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    801553 8fc1:1V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    801554 8fc1:1V (2.5) BS04 MG ? GO:0003723 ... P60492 37452045
    801555 8fc1:1W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 37452045
    801556 8fc1:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    801557 8fc1:1X (2.5) BS01 rna ? GO:0003735 ... Q5SHP0 37452045
    801558 8fc1:1Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 37452045
    801559 8fc1:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    801560 8fc1:1Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 37452045
    801561 8fc1:1Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 37452045
    801562 8fc1:1b (2.5) BS01 rna ? GO:0003735 ... P80371 37452045
    801563 8fc1:1b (2.5) BS02 MG ? GO:0003735 ... P80371 37452045
    801564 8fc1:1c (2.5) BS01 rna ? GO:0003676 ... P80372 37452045
    801565 8fc1:1d (2.5) BS01 rna ? GO:0003723 ... P80373 37452045
    801566 8fc1:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 37452045
    801567 8fc1:1e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 37452045
    801568 8fc1:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    801569 8fc1:1f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 37452045
    801570 8fc1:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    801571 8fc1:1g (2.5) BS01 rna ? GO:0000049 ... P17291 37452045
    801572 8fc1:1h (2.5) BS01 rna ? GO:0003735 ... P0DOY9 37452045
    801573 8fc1:1i (2.5) BS01 rna ? GO:0000049 ... P80374 37452045
    801574 8fc1:1j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 37452045
    801575 8fc1:1k (2.5) BS01 rna ? GO:0003735 ... P80376 37452045
    801576 8fc1:1k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    801577 8fc1:1l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 37452045
    801578 8fc1:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    801579 8fc1:1m (2.5) BS01 rna ? GO:0000049 ... P80377 37452045
    801580 8fc1:1m (2.5) BS02 rna ? GO:0000049 ... P80377 37452045
    801581 8fc1:1m (2.5) BS03 MG ? GO:0000049 ... P80377 37452045
    801582 8fc1:1n (2.5) BS01 rna ? GO:0003735 ... P0DOY6 37452045
    801583 8fc1:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 37452045
    801584 8fc1:1n (2.5) BS03 ZN ? GO:0003735 ... P0DOY6 37452045
    801585 8fc1:1o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 37452045
    801586 8fc1:1o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 37452045
    801587 8fc1:1p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 37452045
    801588 8fc1:1q (2.5) BS01 rna ? GO:0003735 ... P0DOY7 37452045
    801589 8fc1:1r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 37452045
    801590 8fc1:1s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 37452045
    801591 8fc1:1t (2.5) BS01 rna ? GO:0003723 ... P80380 37452045
    801592 8fc1:1t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    801593 8fc1:1y (2.5) BS01 rna ? GO:0005515 ... P0AD49 37452045
    801594 8fc1:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 37452045
    801595 8fc1:20 (2.5) BS01 rna ? GO:0003735 ... P60493 37452045
    801596 8fc1:20 (2.5) BS02 rna ? GO:0003735 ... P60493 37452045
    801597 8fc1:20 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    801598 8fc1:21 (2.5) BS01 rna ? GO:0003735 ... P60494 37452045
    801599 8fc1:22 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 37452045
    801600 8fc1:23 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 37452045

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).