SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802601 8ewb:AC (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802602 8ewb:AC (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    802603 8ewb:AD (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802604 8ewb:AD (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    802605 8ewb:AE (2.87) BS01 rna ? GO:0000027 ... Q02326 37595043
    802606 8ewb:AF (2.87) BS01 rna ? GO:0000463 ... P05737 37595043
    802607 8ewb:AF (2.87) BS02 rna ? GO:0000463 ... P05737 37595043
    802608 8ewb:AG (2.87) BS01 rna ? GO:0000470 ... P17076 37595043
    802609 8ewb:AG (2.87) BS02 rna ? GO:0000470 ... P17076 37595043
    802610 8ewb:AH (2.87) BS01 rna ? GO:0002181 ... P05738 37595043
    802611 8ewb:AI (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802612 8ewb:AI (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    802613 8ewb:AJ (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802614 8ewb:AJ (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    802615 8ewb:AL (2.87) BS01 rna ? GO:0002181 ... Q12690 37595043
    802616 8ewb:AL (2.87) BS02 rna ? GO:0002181 ... Q12690 37595043
    802617 8ewb:AM (2.87) BS01 rna ? GO:0000027 ... P36105 37595043
    802618 8ewb:AN (2.87) BS01 rna ? GO:0000470 ... P05748 37595043
    802619 8ewb:AN (2.87) BS02 rna ? GO:0000470 ... P05748 37595043
    802620 8ewb:AO (2.87) BS01 rna ? GO:0000470 ... P26784 37595043
    802621 8ewb:AP (2.87) BS01 rna ? GO:0000448 ... P05740 37595043
    802622 8ewb:AP (2.87) BS02 rna ? GO:0000448 ... P05740 37595043
    802623 8ewb:AQ (2.87) BS01 rna ? GO:0002181 ... P0CX49 37595043
    802624 8ewb:AR (2.87) BS01 rna ? GO:0002181 ... P0CX82 37595043
    802625 8ewb:AR (2.87) BS02 rna ? GO:0002181 ... P0CX82 37595043
    802626 8ewb:AS (2.87) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    802627 8ewb:AS (2.87) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    802628 8ewb:AT (2.87) BS01 rna ? GO:0002181 ... Q02753 37595043
    802629 8ewb:AT (2.87) BS02 rna ? GO:0002181 ... Q02753 37595043
    802630 8ewb:AU (2.87) BS01 rna ? GO:0002181 ... P05749 37595043
    802631 8ewb:AV (2.87) BS01 rna ? GO:0002181 ... P0CX41 37595043
    802632 8ewb:AV (2.87) BS02 rna ? GO:0002181 ... P0CX41 37595043
    802633 8ewb:AW (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802634 8ewb:AX (2.87) BS01 rna ? GO:0000027 ... P04456 37595043
    802635 8ewb:AX (2.87) BS02 rna ? GO:0000027 ... P04456 37595043
    802636 8ewb:AY (2.87) BS01 rna ? GO:0002181 ... P05743 37595043
    802637 8ewb:AY (2.87) BS02 rna ? GO:0002181 ... P05743 37595043
    802638 8ewb:AZ (2.87) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    802639 8ewb:Aa (2.87) BS01 rna ? GO:0002181 ... P02406 37595043
    802640 8ewb:Ab (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802641 8ewb:Ac (2.87) BS01 rna ? GO:0002181 ... P14120 37595043
    802642 8ewb:Ad (2.87) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    802643 8ewb:Ae (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802644 8ewb:Af (2.87) BS01 rna ? GO:0000027 ... P05744 37595043
    802645 8ewb:Ag (2.87) BS01 rna ? GO:0002181 ... P87262 37595043
    802646 8ewb:Ah (2.87) BS01 rna ? GO:0000463 ... P0CX84 37595043
    802647 8ewb:Ah (2.87) BS02 rna ? GO:0000463 ... P0CX84 37595043
    802648 8ewb:Ai (2.87) BS01 rna ? GO:0000470 ... P05745 37595043
    802649 8ewb:Aj (2.87) BS01 rna ? GO:0000448 ... P49166 37595043
    802650 8ewb:Aj (2.87) BS02 rna ? GO:0000448 ... P49166 37595043
    802651 8ewb:Ak (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802652 8ewb:Al (2.87) BS01 rna ? GO:0002181 ... P04650 37595043
    802653 8ewb:Al (2.87) BS02 rna ? GO:0002181 ... P04650 37595043
    802654 8ewb:Am (2.87) BS01 rna ? GO:0000027 ... P0CH08 37595043
    802655 8ewb:Ao (2.87) BS01 rna ? GO:0002181 ... P0CX27 37595043
    802656 8ewb:Ao (2.87) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    802657 8ewb:Ap (2.87) BS01 rna ? GO:0002181 ... P0CX25 37595043
    802658 8ewb:BA (2.87) BS01 rna ? GO:0000028 ... P32905 37595043
    802659 8ewb:BB (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802660 8ewb:BC (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    802661 8ewb:BD (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    802662 8ewb:BE (2.87) BS01 rna ? GO:0002181 ... P0CX35 37595043
    802663 8ewb:BF (2.87) BS01 rna ? GO:0003723 ... A0A1L4AA68 37595043
    802664 8ewb:BF (2.87) BS02 rna ? GO:0003723 ... A0A1L4AA68 37595043
    802665 8ewb:BG (2.87) BS01 rna ? GO:0000462 ... P0CX37 37595043
    802666 8ewb:BH (2.87) BS01 rna ? GO:0002181 ... P26786 37595043
    802667 8ewb:BI (2.87) BS01 rna ? GO:0000462 ... P0CX39 37595043
    802668 8ewb:BI (2.87) BS02 rna ? GO:0000462 ... P0CX39 37595043
    802669 8ewb:BJ (2.87) BS01 rna ? GO:0000462 ... O13516 37595043
    802670 8ewb:BK (2.87) BS01 rna ? GO:0000054 ... Q08745 37595043
    802671 8ewb:BL (2.87) BS01 rna ? GO:0000028 ... P0CX47 37595043
    802672 8ewb:BM (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802673 8ewb:BN (2.87) BS01 rna ? GO:0000462 ... P05756 37595043
    802674 8ewb:BN (2.87) BS02 rna ? GO:0000462 ... P05756 37595043
    802675 8ewb:BO (2.87) BS01 rna ? GO:0000028 ... P06367 37595043
    802676 8ewb:BP (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    802677 8ewb:BQ (2.87) BS01 rna ? GO:0000462 ... P0CX51 37595043
    802678 8ewb:BR (2.87) BS01 rna ? GO:0000028 ... P02407 37595043
    802679 8ewb:BS (2.87) BS01 rna ? GO:0000054 ... P0CX55 37595043
    802680 8ewb:BT (2.87) BS01 rna ? GO:0000054 ... P07280 37595043
    802681 8ewb:BU (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    802682 8ewb:BV (2.87) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    802683 8ewb:BW (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802684 8ewb:BX (2.87) BS01 rna ? GO:0000462 ... P0CX29 37595043
    802685 8ewb:BY (2.87) BS01 rna ? GO:0000462 ... P0CX31 37595043
    802686 8ewb:BZ (2.87) BS01 rna ? N/A N/A 37595043
    802687 8ewb:Ba (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802688 8ewb:Bb (2.87) BS01 rna ? GO:0000028 ... P35997 37595043
    802689 8ewb:Bc (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802690 8ewb:Bd (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802691 8ewb:Be (2.87) BS01 rna ? GO:0002181 ... P0CX33 37595043
    802692 8ewb:Bf (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    802693 8ewb:Bg (2.87) BS01 rna ? GO:0001965 ... P38011 37595043
    802694 8ewb:DC (2.87) BS01 rna 3.6.5.- GO:0003746 ... P32324 37595043
    802695 8ewb:DC (2.87) BS02 rna 3.6.5.- GO:0003746 ... P32324 37595043
    802696 8ewb:DC (2.87) BS03 rna 3.6.5.- GO:0003746 ... P32324 37595043
    802697 8ewb:DC (2.87) BS04 GDP 3.6.5.- GO:0003746 ... P32324 37595043
    802698 8ewb:E (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    802699 8ewb:E (2.87) BS02 rna ? GO:0003723 ... N/A 37595043
    802700 8ewb:V (2.87) BS01 rna ? GO:0000027 ... P05317 37595043
    802701 8ewc:AA (2.45) BS01 rna ? GO:0002181 ... P0CX45 37595043
    802702 8ewc:AA (2.45) BS02 MG ? GO:0002181 ... P0CX45 37595043
    802703 8ewc:AB (2.45) BS01 rna ? GO:0000027 ... P14126 37595043
    802704 8ewc:AB (2.45) BS02 MG ? GO:0000027 ... P14126 37595043
    802705 8ewc:AC (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802706 8ewc:AC (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    802707 8ewc:AD (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802708 8ewc:AD (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    802709 8ewc:AE (2.45) BS01 rna ? GO:0000027 ... Q02326 37595043
    802710 8ewc:AF (2.45) BS01 rna ? GO:0000463 ... P05737 37595043
    802711 8ewc:AF (2.45) BS02 rna ? GO:0000463 ... P05737 37595043
    802712 8ewc:AG (2.45) BS01 rna ? GO:0000470 ... P17076 37595043
    802713 8ewc:AG (2.45) BS02 rna ? GO:0000470 ... P17076 37595043
    802714 8ewc:AH (2.45) BS01 rna ? GO:0002181 ... P05738 37595043
    802715 8ewc:AI (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802716 8ewc:AI (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    802717 8ewc:AJ (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802718 8ewc:AJ (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    802719 8ewc:AL (2.45) BS01 rna ? GO:0002181 ... Q12690 37595043
    802720 8ewc:AL (2.45) BS02 rna ? GO:0002181 ... Q12690 37595043
    802721 8ewc:AM (2.45) BS01 rna ? GO:0000027 ... P36105 37595043
    802722 8ewc:AN (2.45) BS01 rna ? GO:0000470 ... P05748 37595043
    802723 8ewc:AN (2.45) BS02 rna ? GO:0000470 ... P05748 37595043
    802724 8ewc:AN (2.45) BS03 MG ? GO:0000470 ... P05748 37595043
    802725 8ewc:AO (2.45) BS01 rna ? GO:0000470 ... P26784 37595043
    802726 8ewc:AP (2.45) BS01 rna ? GO:0000448 ... P05740 37595043
    802727 8ewc:AP (2.45) BS02 rna ? GO:0000448 ... P05740 37595043
    802728 8ewc:AQ (2.45) BS01 rna ? GO:0002181 ... P0CX49 37595043
    802729 8ewc:AR (2.45) BS01 rna ? GO:0002181 ... P0CX82 37595043
    802730 8ewc:AR (2.45) BS02 rna ? GO:0002181 ... P0CX82 37595043
    802731 8ewc:AS (2.45) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    802732 8ewc:AS (2.45) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    802733 8ewc:AT (2.45) BS01 rna ? GO:0002181 ... Q02753 37595043
    802734 8ewc:AT (2.45) BS02 rna ? GO:0002181 ... Q02753 37595043
    802735 8ewc:AU (2.45) BS01 rna ? GO:0002181 ... P05749 37595043
    802736 8ewc:AV (2.45) BS01 rna ? GO:0002181 ... P0CX41 37595043
    802737 8ewc:AV (2.45) BS02 rna ? GO:0002181 ... P0CX41 37595043
    802738 8ewc:AW (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802739 8ewc:AX (2.45) BS01 rna ? GO:0000027 ... P04456 37595043
    802740 8ewc:AX (2.45) BS02 rna ? GO:0000027 ... P04456 37595043
    802741 8ewc:AY (2.45) BS01 rna ? GO:0002181 ... P05743 37595043
    802742 8ewc:AY (2.45) BS02 rna ? GO:0002181 ... P05743 37595043
    802743 8ewc:AZ (2.45) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    802744 8ewc:Aa (2.45) BS01 rna ? GO:0002181 ... P02406 37595043
    802745 8ewc:Ab (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802746 8ewc:Ac (2.45) BS01 rna ? GO:0002181 ... P14120 37595043
    802747 8ewc:Ad (2.45) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    802748 8ewc:Ae (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802749 8ewc:Ae (2.45) BS02 MG ? GO:0003735 ... N/A 37595043
    802750 8ewc:Af (2.45) BS01 rna ? GO:0000027 ... P05744 37595043
    802751 8ewc:Af (2.45) BS02 MG ? GO:0000027 ... P05744 37595043
    802752 8ewc:Ag (2.45) BS01 rna ? GO:0002181 ... P87262 37595043
    802753 8ewc:Ah (2.45) BS01 rna ? GO:0000463 ... P0CX84 37595043
    802754 8ewc:Ah (2.45) BS02 rna ? GO:0000463 ... P0CX84 37595043
    802755 8ewc:Ai (2.45) BS01 rna ? GO:0000470 ... P05745 37595043
    802756 8ewc:Aj (2.45) BS01 rna ? GO:0000448 ... P49166 37595043
    802757 8ewc:Aj (2.45) BS02 rna ? GO:0000448 ... P49166 37595043
    802758 8ewc:Aj (2.45) BS03 MG ? GO:0000448 ... P49166 37595043
    802759 8ewc:Ak (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802760 8ewc:Al (2.45) BS01 rna ? GO:0002181 ... P04650 37595043
    802761 8ewc:Al (2.45) BS02 rna ? GO:0002181 ... P04650 37595043
    802762 8ewc:Am (2.45) BS01 rna ? GO:0000027 ... P0CH08 37595043
    802763 8ewc:Ao (2.45) BS01 rna ? GO:0002181 ... P0CX27 37595043
    802764 8ewc:Ao (2.45) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    802765 8ewc:Ap (2.45) BS01 rna ? GO:0002181 ... P0CX25 37595043
    802766 8ewc:BA (2.45) BS01 rna ? GO:0000028 ... P32905 37595043
    802767 8ewc:BB (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802768 8ewc:BC (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    802769 8ewc:BD (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    802770 8ewc:BE (2.45) BS01 rna ? GO:0002181 ... P0CX35 37595043
    802771 8ewc:BF (2.45) BS01 rna ? GO:0003723 ... A0A1L4AA68 37595043
    802772 8ewc:BF (2.45) BS02 rna ? GO:0003723 ... A0A1L4AA68 37595043
    802773 8ewc:BG (2.45) BS01 rna ? GO:0000462 ... P0CX37 37595043
    802774 8ewc:BH (2.45) BS01 rna ? GO:0002181 ... P26786 37595043
    802775 8ewc:BI (2.45) BS01 rna ? GO:0000462 ... P0CX39 37595043
    802776 8ewc:BI (2.45) BS02 rna ? GO:0000462 ... P0CX39 37595043
    802777 8ewc:BJ (2.45) BS01 rna ? GO:0000462 ... O13516 37595043
    802778 8ewc:BK (2.45) BS01 rna ? GO:0000054 ... Q08745 37595043
    802779 8ewc:BL (2.45) BS01 rna ? GO:0000028 ... P0CX47 37595043
    802780 8ewc:BM (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802781 8ewc:BN (2.45) BS01 rna ? GO:0000462 ... P05756 37595043
    802782 8ewc:BN (2.45) BS02 rna ? GO:0000462 ... P05756 37595043
    802783 8ewc:BO (2.45) BS01 rna ? GO:0000028 ... P06367 37595043
    802784 8ewc:BP (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    802785 8ewc:BQ (2.45) BS01 rna ? GO:0000462 ... P0CX51 37595043
    802786 8ewc:BR (2.45) BS01 rna ? GO:0000028 ... P02407 37595043
    802787 8ewc:BS (2.45) BS01 rna ? GO:0000054 ... P0CX55 37595043
    802788 8ewc:BT (2.45) BS01 rna ? GO:0000054 ... P07280 37595043
    802789 8ewc:BU (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    802790 8ewc:BV (2.45) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    802791 8ewc:BW (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802792 8ewc:BX (2.45) BS01 rna ? GO:0000462 ... P0CX29 37595043
    802793 8ewc:BY (2.45) BS01 rna ? GO:0000462 ... P0CX31 37595043
    802794 8ewc:BZ (2.45) BS01 rna ? N/A N/A 37595043
    802795 8ewc:BZ (2.45) BS02 rna ? N/A N/A 37595043
    802796 8ewc:Ba (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802797 8ewc:Bb (2.45) BS01 rna ? GO:0000028 ... P35997 37595043
    802798 8ewc:Bc (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802799 8ewc:Bd (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    802800 8ewc:Be (2.45) BS01 rna ? GO:0002181 ... P0CX33 37595043

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).