SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802801 8fc6:2G (2.35) BS01 rna ? N/A N/A 37452045
    802802 8fc6:2G (2.35) BS02 rna ? N/A N/A 37452045
    802803 8fc6:2G (2.35) BS03 MG ? N/A N/A 37452045
    802804 8fc6:2H (2.35) BS01 rna ? N/A N/A 37452045
    802805 8fc6:2I (2.35) BS01 rna ? N/A N/A 37452045
    802806 8fc6:2N (2.35) BS01 rna ? N/A N/A 37452045
    802807 8fc6:2O (2.35) BS01 rna ? N/A N/A 37452045
    802808 8fc6:2O (2.35) BS02 rna ? N/A N/A 37452045
    802809 8fc6:2P (2.35) BS01 rna ? N/A N/A 37452045
    802810 8fc6:2Q (2.35) BS01 rna ? N/A N/A 37452045
    802811 8fc6:2Q (2.35) BS02 rna ? N/A N/A 37452045
    802812 8fc6:2Q (2.35) BS03 MG ? N/A N/A 37452045
    802813 8fc6:2Q (2.35) BS04 MG ? N/A N/A 37452045
    802814 8fc6:2R (2.35) BS01 rna ? N/A N/A 37452045
    802815 8fc6:2R (2.35) BS02 MG ? N/A N/A 37452045
    802816 8fc6:2S (2.35) BS01 rna ? N/A N/A 37452045
    802817 8fc6:2S (2.35) BS02 rna ? N/A N/A 37452045
    802818 8fc6:2T (2.35) BS01 rna ? N/A N/A 37452045
    802819 8fc6:2T (2.35) BS02 rna ? N/A N/A 37452045
    802820 8fc6:2U (2.35) BS01 rna ? N/A N/A 37452045
    802821 8fc6:2U (2.35) BS02 MG ? N/A N/A 37452045
    802822 8fc6:2V (2.35) BS01 rna ? N/A N/A 37452045
    802823 8fc6:2V (2.35) BS02 MG ? N/A N/A 37452045
    802824 8fc6:2V (2.35) BS03 MG ? N/A N/A 37452045
    802825 8fc6:2W (2.35) BS01 rna ? N/A N/A 37452045
    802826 8fc6:2W (2.35) BS02 MG ? N/A N/A 37452045
    802827 8fc6:2W (2.35) BS03 MG ? N/A N/A 37452045
    802828 8fc6:2X (2.35) BS01 rna ? N/A N/A 37452045
    802829 8fc6:2Y (2.35) BS01 rna ? N/A N/A 37452045
    802830 8fc6:2Y (2.35) BS02 ZN ? N/A N/A 37452045
    802831 8fc6:2Z (2.35) BS01 rna ? N/A N/A 37452045
    802832 8fc6:2Z (2.35) BS02 rna ? N/A N/A 37452045
    802833 8fc6:2b (2.35) BS01 rna ? N/A N/A 37452045
    802834 8fc6:2c (2.35) BS01 rna ? N/A N/A 37452045
    802835 8fc6:2d (2.35) BS01 rna ? N/A N/A 37452045
    802836 8fc6:2d (2.35) BS02 SF4 ? N/A N/A 37452045
    802837 8fc6:2e (2.35) BS01 rna ? N/A N/A 37452045
    802838 8fc6:2f (2.35) BS01 rna ? N/A N/A 37452045
    802839 8fc6:2f (2.35) BS02 MG ? N/A N/A 37452045
    802840 8fc6:2g (2.35) BS01 rna ? N/A N/A 37452045
    802841 8fc6:2h (2.35) BS01 rna ? N/A N/A 37452045
    802842 8fc6:2i (2.35) BS01 rna ? N/A N/A 37452045
    802843 8fc6:2j (2.35) BS01 rna ? N/A N/A 37452045
    802844 8fc6:2k (2.35) BS01 rna ? N/A N/A 37452045
    802845 8fc6:2k (2.35) BS02 MG ? N/A N/A 37452045
    802846 8fc6:2l (2.35) BS01 rna ? N/A N/A 37452045
    802847 8fc6:2l (2.35) BS02 MG ? N/A N/A 37452045
    802848 8fc6:2m (2.35) BS01 rna ? N/A N/A 37452045
    802849 8fc6:2n (2.35) BS01 rna ? N/A N/A 37452045
    802850 8fc6:2n (2.35) BS02 ZN ? N/A N/A 37452045
    802851 8fc6:2o (2.35) BS01 rna ? N/A N/A 37452045
    802852 8fc6:2o (2.35) BS02 rna ? N/A N/A 37452045
    802853 8fc6:2p (2.35) BS01 rna ? N/A N/A 37452045
    802854 8fc6:2q (2.35) BS01 rna ? N/A N/A 37452045
    802855 8fc6:2r (2.35) BS01 rna ? N/A N/A 37452045
    802856 8fc6:2s (2.35) BS01 rna ? N/A N/A 37452045
    802857 8fc6:2t (2.35) BS01 rna ? N/A N/A 37452045
    802858 8fc6:2t (2.35) BS02 MG ? N/A N/A 37452045
    802859 8fc6:2y (2.35) BS01 rna ? N/A N/A 37452045
    802860 8fc7:A (3.3) BS01 XPW ? GO:0000122 ... Q9HBA0 37353484
    802861 8fc7:B (3.3) BS01 XPW ? GO:0000122 ... Q9HBA0 37353484
    802862 8fc7:C (3.3) BS01 XPW ? GO:0000122 ... Q9HBA0 37353484
    802863 8fc7:D (3.3) BS01 XPW ? GO:0000122 ... Q9HBA0 37353484
    802864 8fc7:E (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802865 8fc7:E (3.3) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802866 8fc7:F (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802867 8fc7:F (3.3) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802868 8fc7:G (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802869 8fc7:G (3.3) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802870 8fc7:H (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802871 8fc7:H (3.3) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802872 8fc8:A (3.47) BS01 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802873 8fc8:A (3.47) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802874 8fc8:A (3.47) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802875 8fc8:B (3.47) BS01 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802876 8fc8:B (3.47) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802877 8fc8:B (3.47) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802878 8fc8:C (3.47) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802879 8fc8:C (3.47) BS02 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802880 8fc8:C (3.47) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802881 8fc8:D (3.47) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802882 8fc8:D (3.47) BS02 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802883 8fc8:D (3.47) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802884 8fc9:E (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802885 8fc9:E (3.75) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802886 8fc9:F (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802887 8fc9:F (3.75) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802888 8fc9:G (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802889 8fc9:G (3.75) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802890 8fc9:H (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    802891 8fc9:H (3.75) BS02 GDP 3.6.5.2 GO:0000902 ... P61586 37353484
    802892 8fca:A (3.41) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353484
    802893 8fca:A (3.41) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802894 8fca:B (3.41) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353484
    802895 8fca:B (3.41) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802896 8fca:C (3.41) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802897 8fca:C (3.41) BS02 XS9 ? GO:0000122 ... Q9HBA0 37353484
    802898 8fca:D (3.41) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802899 8fca:D (3.41) BS02 XS9 ? GO:0000122 ... Q9HBA0 37353484
    802900 8fcb:A (3.55) BS01 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802901 8fcb:A (3.55) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802902 8fcb:A (3.55) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802903 8fcb:B (3.55) BS01 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802904 8fcb:B (3.55) BS02 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802905 8fcb:B (3.55) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802906 8fcb:C (3.55) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802907 8fcb:C (3.55) BS02 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802908 8fcb:C (3.55) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802909 8fcb:D (3.55) BS01 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802910 8fcb:D (3.55) BS02 XQ3 ? GO:0000122 ... Q9HBA0 37353484
    802911 8fcb:D (3.55) BS03 Y01 ? GO:0000122 ... Q9HBA0 37353484
    802912 8fcb:E (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    802913 8fcb:F (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    802914 8fcb:G (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    802915 8fcb:H (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    802916 8fcc:A (2.57) BS01 YO9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 36652602
    802917 8fcd:A (2.57) BS01 ZJ2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 36652602
    802918 8fce:A (2.77) BS01 XRL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 36652602
    802919 8fci:A (1.752) BS01 SAH 2.1.1.228 GO:0002939 ... Q73VN9 N/A
    802920 8fci:B (1.752) BS01 SAH 2.1.1.228 GO:0002939 ... Q73VN9 N/A
    802921 8fcj:A (2.83) BS01 rna ? GO:0051607 ... A0A235IG00 37557170
    802922 8fcj:A (2.83) BS02 dna ? GO:0051607 ... A0A235IG00 37557170
    802923 8fcj:B (2.83) BS01 rna ? N/A A0A235IH92 37557170
    802924 8fcj:C (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802925 8fcj:D (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802926 8fcj:D (2.83) BS02 dna ? N/A A0A235IG15 37557170
    802927 8fcj:E (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802928 8fcj:E (2.83) BS02 dna ? N/A A0A235IG15 37557170
    802929 8fcj:F (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802930 8fcj:F (2.83) BS02 dna ? N/A A0A235IG15 37557170
    802931 8fcj:G (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802932 8fcj:G (2.83) BS02 dna ? N/A A0A235IG15 37557170
    802933 8fcj:H (2.83) BS01 rna ? N/A A0A235IG15 37557170
    802934 8fcj:H (2.83) BS02 dna ? N/A A0A235IG15 37557170
    802935 8fcj:I (2.83) BS01 dna ? GO:0051607 ... A0A235IGR9 37557170
    802936 8fcj:I (2.83) BS02 dna ? GO:0051607 ... A0A235IGR9 37557170
    802937 8fcj:K (2.83) BS01 dna ? N/A A0A235IGR9 37557170
    802938 8fcl:A (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802939 8fcl:A (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802940 8fcl:B (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802941 8fcl:B (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802942 8fcl:C (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802943 8fcl:C (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802944 8fcl:D (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802945 8fcl:D (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802946 8fcl:E (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802947 8fcl:E (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802948 8fcl:F (3.51) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802949 8fcl:F (3.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802950 8fcm:A (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802951 8fcm:A (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802952 8fcm:B (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802953 8fcm:B (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802954 8fcm:C (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802955 8fcm:C (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802956 8fcm:D (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802957 8fcm:D (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802958 8fcm:E (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802959 8fcm:E (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802960 8fcm:F (3.27) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802961 8fcm:F (3.27) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802962 8fcn:A (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802963 8fcn:A (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802964 8fcn:A (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802965 8fcn:B (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802966 8fcn:B (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802967 8fcn:B (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802968 8fcn:C (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802969 8fcn:C (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802970 8fcn:C (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802971 8fcn:D (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802972 8fcn:D (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802973 8fcn:D (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802974 8fcn:E (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802975 8fcn:E (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802976 8fcn:E (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802977 8fcn:F (2.95) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37945741
    802978 8fcn:F (2.95) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802979 8fcn:F (2.95) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802980 8fco:A (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802981 8fco:A (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802982 8fco:B (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802983 8fco:B (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802984 8fco:C (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802985 8fco:C (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802986 8fco:D (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802987 8fco:D (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802988 8fco:E (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802989 8fco:E (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802990 8fco:F (3.31) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802991 8fco:F (3.31) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802992 8fcp:A (3.52) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802993 8fcp:A (3.52) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802994 8fcp:B (3.52) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802995 8fcp:B (3.52) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802996 8fcp:C (3.52) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802997 8fcp:C (3.52) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802998 8fcp:D (3.52) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    802999 8fcp:D (3.52) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37945741
    803000 8fcp:E (3.52) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37945741

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).